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Homology
BLAST of mRNA_L-elsbetiae_contig116.1386.1 vs. uniprot
Match: D7FK94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK94_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 7.620e-14 Identity = 58/123 (47.15%), Postives = 71/123 (57.72%), Query Frame = 2
Query: 287 RAVEASEDCARLGRRLVELVIKDALMRLRESGFDVTSRDDDRLEP---VLQTTTXXXXKSCKNGGDGTGS----LSRRGSCKEDQTLAPGIPGDAYSGAVSGEEECRDCQRLARANVELSRLL 634
RAVEAS +C RLGRRLVELVIK+A MRLRES FDVT R+ E T + K D T + L+ RG + +T G++ SG GE+ C+ C RLA ANVEL+RLL
Sbjct: 695 RAVEASNNCERLGRRLVELVIKEASMRLRESDFDVTPREHKARESGTTASATASIGNINMKKRDVDKTTTEPQDLAHRGR-NQHRT------GNSCSGDAPGEKRCQGCDRLAHANVELTRLL 810
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 938 |
| Cds size | 471 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815364.0874174-UTR-L-elsbetiae_contig116:47333..47439 | 1622815364.0874174-UTR-L-elsbetiae_contig116:47333..47439 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig116 47334..47439 - |
| 1691682862.1779804-UTR-L-elsbetiae_contig116:47333..47439 | 1691682862.1779804-UTR-L-elsbetiae_contig116:47333..47439 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig116 47334..47439 - |
| 1622815364.1405103-UTR-L-elsbetiae_contig116:48824..49185 | 1622815364.1405103-UTR-L-elsbetiae_contig116:48824..49185 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig116 48825..49185 - |
| 1691682862.221024-UTR-L-elsbetiae_contig116:48824..49185 | 1691682862.221024-UTR-L-elsbetiae_contig116:48824..49185 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig116 48825..49185 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815364.1001465-CDS-L-elsbetiae_contig116:47439..47445 | 1622815364.1001465-CDS-L-elsbetiae_contig116:47439..47445 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig116 47440..47445 - |
| 1691682862.1889484-CDS-L-elsbetiae_contig116:47439..47445 | 1691682862.1889484-CDS-L-elsbetiae_contig116:47439..47445 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig116 47440..47445 - |
| 1622815364.1122725-CDS-L-elsbetiae_contig116:47461..47909 | 1622815364.1122725-CDS-L-elsbetiae_contig116:47461..47909 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig116 47462..47909 - |
| 1691682862.2013872-CDS-L-elsbetiae_contig116:47461..47909 | 1691682862.2013872-CDS-L-elsbetiae_contig116:47461..47909 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig116 47462..47909 - |
| 1622815364.1265938-CDS-L-elsbetiae_contig116:48807..48824 | 1622815364.1265938-CDS-L-elsbetiae_contig116:48807..48824 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig116 48808..48824 - |
| 1691682862.2124429-CDS-L-elsbetiae_contig116:48807..48824 | 1691682862.2124429-CDS-L-elsbetiae_contig116:48807..48824 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig116 48808..48824 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig116.1386.1 >prot_L-elsbetiae_contig116.1386.1 ID=prot_L-elsbetiae_contig116.1386.1|Name=mRNA_L-elsbetiae_contig116.1386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
MRLRESGFDVTSRDDDRLEPVLQTTTTTTTKSCKNGGDGTGSLSRRGSCK
EDQTLAPGIPGDAYSGAVSGEEECRDCQRLARANVELSRLLAPRPPADLP
ARTAAPPPPPPAVGAREQRHNSESTMNGALVVAFTQRRTRKAAAAAAAVA
AAAAAS* back to topmRNA from alignment at L-elsbetiae_contig116:47334..49185- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig116.1386.1 ID=mRNA_L-elsbetiae_contig116.1386.1|Name=mRNA_L-elsbetiae_contig116.1386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1852bp|location=Sequence derived from alignment at L-elsbetiae_contig116:47334..49185- (Laminarionema elsbetiae ELsaHSoW15)
GGAGAAGGAGAGGACAGGAATACCGCCGTGGCTCCGGCGCTTCAACTCAG
GTAACGAAGGCCTTGCTGCTAGTTGTTCACCCCTTGGTTGCTTGTTCTTT
CTTTGGTTCCGCATTGACTGTTTCAAAAGTTTGTGGCTCTCGCCCCCAAG
CTTGAAGTTTTTTTCATTGCTGTTGTACAACGACAGCATAAACATCATCA
ACAACTACAACAACATTAAAACAGCAAAAACCAAGTCGTGCCTGAGCCAA
TGTTGATTTGATTTTGTTTCACGTTCCAACCTCCCCAGAGCGGTCGAAGC
ATCCGAGGACTGCGCAAGGCTTGGGCGGAGGCTTGTTGAGCTGGTAATAA
AAGACGCCTTGATGAGGCTAAGAGAGAGGTGAGACCAATCATATTCGACG
AAACACTCAGGGGAGATGGGGGTTACTACCACCAAAGTTTTGAGCCCCCA
CCCCCGTCTTTCGGCCTGGAAGTTCCCCCTCGGGTGGGAGGATTGTTTTC
TTCATAAAAAATAAAATGATCCCTTCCCCGGGGGGAACTTTGAGGGGATT
ACGGTACTGTTTGTTTGTTTTCGAAGAAAAAAGGACTTAGCCCTCAGACC
ATCTATACCGTAGCGCATGCACGGGCCTCCTTTCGAAGCGGGGCGCCGGT
CCTTCTCCGAATAGCGGTGCCACCAAGATTTAACGTTCACGAAGTATAGC
TTGTATCTCTCCCCATAATTGTTTTCTCTTTGGACACCCTGTACCACGAC
GATTGTCTCGCTACGCTGTAGTCGAGCGAAACTGGCGTTCCCTGCCGTGC
CATATTCCCTCCCCCCCATCTCCCCCTCCGCCCCGCCCCCCCCCCCCCTA
CGGTGCTCACCCATCCATACTCCGTGGTATCTGCTCTCCCCTGAATCACC
ACTTTGGCCTGCCTTCATTCCTTGTTTTTTCCCTTCCCACTACCGGCATG
ACTCTTTCTCTTGCCCCTTTCTGGCAAGTTCGGGCCGCCCTTGCATGCTT
GTACGCGGAATTGAAATGCCTAGAGCCGTTTCGCGTCCTCTAGTGGGGGG
AGATTTTGCGCATATTTTGTACCCGCCGGGGGAAAAGAGGCTGTGTGATA
TGTATATTCTAATAGAGCGACGTTCTCTCCCCTGATTTGTCGTCAAGGGC
TCGATGACACATACACATAGATACACATACATACTGGTTGGCTTCTGTTC
TTTGACCTGTCTGTATTCCTAGACCCTTACTTCGCACCTGGACCCTAACC
CTGACGTCATTTTTACCCCCCTTCAGCGGTTTCGACGTTACCTCGCGAGA
CGACGACCGGCTGGAACCCGTTCTTCAAACCACCACCACCACCACCACCA
AAAGTTGCAAGAATGGCGGCGACGGCACCGGTTCCTTGAGTCGACGGGGC
TCCTGCAAAGAAGACCAGACTCTCGCTCCCGGAATCCCCGGCGACGCCTA
TTCCGGCGCGGTCTCCGGAGAAGAAGAGTGTCGAGACTGCCAGAGGCTTG
CCCGAGCCAACGTCGAGCTCTCGCGCCTCTTGGCACCACGGCCACCGGCG
GATTTACCGGCAAGAACAGCAGCGCCGCCGCCGCCGCCGCCGGCGGTCGG
GGCACGAGAACAGAGGCACAATTCCGAGTCAACCATGAATGGAGCATTAG
TCGTAGCATTTACTCAGCGGAGAACCCGAAAAGCGGCGGCGGCAGCGGCG
GCGGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCCTAAAAGA
TAGAAGAGCAAAGGCCGATGGTGGTAAAGGTCGTAGTGGTGGCGGCAGCA
AGAGAACAACGAGAGCAAAGGCCAGAACGCCGGTGGTTCGGCTCGCCACC
GC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig116:47334..49185- >mRNA_L-elsbetiae_contig116.1386.1 ID=mRNA_L-elsbetiae_contig116.1386.1|Name=mRNA_L-elsbetiae_contig116.1386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig116:47334..49185- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCTAAGAGAGAGATGAGGCTAAGAGAGAGCGGTTTCGACGTTACC
TCGCGAGACGACGACCGGCTGGAACCCGTTCTTCAAACCACCACCACCAC
CACCACCAAAAGTTGCAAGAATGGCGGCGACGGCACCGGTTCCTTGAGTC
GACGGGGCTCCTGCAAAGAAGACCAGACTCTCGCTCCCGGAATCCCCGGC
GACGCCTATTCCGGCGCGGTCTCCGGAGAAGAAGAGTGTCGAGACTGCCA
GAGGCTTGCCCGAGCCAACGTCGAGCTCTCGCGCCTCTTGGCACCACGGC
CACCGGCGGATTTACCGGCAAGAACAGCAGCGCCGCCGCCGCCGCCGCCG
GCGGTCGGGGCACGAGAACAGAGGCACAATTCCGAGTCAACCATGAATGG
AGCATTAGTCGTAGCATTTACTCAGCGGAGAACCCGAAAAGCGGCGGCGG
CAGCGGCGGCGGTGGCAGCAGCAGCAGCAGCACGGTTTCGACGTTACCTC
GCGAGACGACGACCGGCTGGAACCCGTTCTTCAAACCACCACCACCACCA
CCACCAAAAGTTGCAAGAATGGCGGCGACGGCACCGGTTCCTTGAGTCGA
CGGGGCTCCTGCAAAGAAGACCAGACTCTCGCTCCCGGAATCCCCGGCGA
CGCCTATTCCGGCGCGGTCTCCGGAGAAGAAGAGTGTCGAGACTGCCAGA
GGCTTGCCCGAGCCAACGTCGAGCTCTCGCGCCTCTTGGCACCACGGCCA
CCGGCGGATTTACCGGCAAGAACAGCAGCGCCGCCGCCGCCGCCGCCGGC
GGTCGGGGCACGAGAACAGAGGCACAATTCCGAGTCAACCATGAATGGAG
CATTAGTCGTAGCATTTACTCAGCGGAGAACCCGAAAAGCGGCGGCGGCA
GCGGCGGCGGTGGCAGCAGCAGCAGCAGCATCCTAATCCTAA back to top
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