mRNA_L-elsbetiae_contig116.1383.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig116.1383.1
Unique NamemRNA_L-elsbetiae_contig116.1383.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig116.1383.1 vs. uniprot
Match: D8LDV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV3_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.050e-11
Identity = 49/104 (47.12%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:  316 MTRIEELARDVVLAVVPTKAVLLAPITELRGSGGSAGAVLAGRAEAAGARNVPPLLEILVNLSCADPHAVAAWLTS-GVSDWSPGSALAGLEAELNNRDEKVQI 624
            MTR+EELAR +V   V T   LL PI   +        V AG  +++ A +  P+LE+LVNLSCADPHA+  WL S    D SPG AL GL+ ELN+  EK  +
Sbjct:    1 MTRVEELARSLVPGAVSTGVALLMPILARKPHS----TVAAGPVDSSMASSAFPVLELLVNLSCADPHAIYNWLASCSPDDGSPGGALKGLKIELNSGVEKAVV 100
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig116.1383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDV3_ECTSI1.050e-1147.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig116contigL-elsbetiae_contig116:7168..10223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003470.1
Exons4
Model size1467
Cds size1467
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig116.1383.1prot_L-elsbetiae_contig116.1383.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig116 7168..10223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815363.7913072-CDS-L-elsbetiae_contig116:7167..80191622815363.7913072-CDS-L-elsbetiae_contig116:7167..8019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 7168..8019 -
1691682862.020421-CDS-L-elsbetiae_contig116:7167..80191691682862.020421-CDS-L-elsbetiae_contig116:7167..8019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 7168..8019 -
1622815363.8033412-CDS-L-elsbetiae_contig116:8621..88411622815363.8033412-CDS-L-elsbetiae_contig116:8621..8841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 8622..8841 -
1691682862.0318615-CDS-L-elsbetiae_contig116:8621..88411691682862.0318615-CDS-L-elsbetiae_contig116:8621..8841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 8622..8841 -
1622815363.8185892-CDS-L-elsbetiae_contig116:9098..91631622815363.8185892-CDS-L-elsbetiae_contig116:9098..9163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 9099..9163 -
1691682862.0415154-CDS-L-elsbetiae_contig116:9098..91631691682862.0415154-CDS-L-elsbetiae_contig116:9098..9163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 9099..9163 -
1622815363.8316216-CDS-L-elsbetiae_contig116:9893..102231622815363.8316216-CDS-L-elsbetiae_contig116:9893..10223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 9894..10223 -
1691682862.0542836-CDS-L-elsbetiae_contig116:9893..102231691682862.0542836-CDS-L-elsbetiae_contig116:9893..10223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 9894..10223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig116.1383.1

>prot_L-elsbetiae_contig116.1383.1 ID=prot_L-elsbetiae_contig116.1383.1|Name=mRNA_L-elsbetiae_contig116.1383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=489bp
MNFLSRRSGGGGNSNSSEKLTATTLRGISSLCTCLVPATITGTGAEMANQ
EKLKTLAALKEVSGLILNEIVTTPTAKSGGGGGGGRGRQCWPPSLITLGL
EALAAMTRIEELARDVVLAVVPTKAVLLAPITELRGSGGSAGAVLAGRAE
AAGARNVPPLLEILVNLSCADPHAVAAWLTSGVSDWSPGSALAGLEAELN
NRDEKVQILAGLVLVNCFKGTKTTASGTGTAAASPPPHLHPSSNPPAPLD
EVIAHRVLPLFFRTLSVWSTLPSFAGWSGGGGDHGGHGRGEYASPVFPSS
PPHAAGSGSFAAVCGGYAAAVAAAVNASVGLRSWQQQREAVEYGAVDSLV
DLLGRARAEEREIAAAGLSACSESDSSSSATNGANASPSRPETAAAGVGA
IDVESSRSRDTRFIRAATQTGLNALATLCARCEAARERTVALGFHSTIRH
WLVVPPWRNGTGNPRPSCGGSGSGGDGGGGGGNESWRSR
back to top

mRNA from alignment at L-elsbetiae_contig116:7168..10223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig116.1383.1 ID=mRNA_L-elsbetiae_contig116.1383.1|Name=mRNA_L-elsbetiae_contig116.1383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3056bp|location=Sequence derived from alignment at L-elsbetiae_contig116:7168..10223- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATTTTCTCTCTAGAAGAAGCGGTGGCGGCGGCAACAGTAACAGCAG
CGAGAAGCTGACGGCCACCACACTCAGGGGGATCAGCTCCCTGTGTACGT
GCTTGGTCCCAGCAACGATCACCGGCACCGGTGCGGAGATGGCGAACCAG
GAAAAGTTAAAAACTTTGGCAGCGCTGAAGGAAGTCTCAGGGTTGATTCT
GAACGAGATTGTGACAACTCCAACAGCAAAAAGCGGCGGCGGCGGGGGCG
GGGGCCGAGGTAGACAGTGTTGGCCGCCGAGCTTAATAACACTGGGACTC
GAGGCGCTGGCCGCTATGACGAGAATCGAGGTACTAGATTATTTACTCTG
TACATTAACACAATAACTCGCGGGTAGACCCAAGGTATGCGGTGTGGCAT
GCTGCTGCGTGTGACTCAAAAAGAAAATACTGCTACCTCGTGCTGTTTTC
GGCTGCTGTGCTGGGAGATGCCCAACGTGCGGCACTTCTATAGTTTCGAT
GGCGTGGTGGTGGGTGCTGGCAAGGAAGGCTTGGCAGACCTAGTCTACAT
ACCTACGTGACGTTGCACTCTTTCCCTCAGAGATAATTCGAAACATAAAA
AAAAAAACATAAACACGCCGGCGCTATTTTCTCTGACATAACATACTCTG
GCCCATTTTGTATCGATGGGAGGGGTGCTCTTCTTTGTAAAAACAAACAT
GCATACTGTTGTATTGTATGTATGTAGCCCCCTCTACCAGGTACCAACAA
AGAAGGGACCTAGACTTTGGAGTCTTGAGGAGAACAGACTTTGATTTTGC
TATAGTACCTATACGCGGAGTTATGGCACGCACCTTGTGCCCCAAGATAG
GACCTACACTCGGTCGGTGAAAAAAATCACCCTGTGGTTGCATGTGACAT
ATGTACATACGTACAAGAAGAAGGCACTCATACATGTTTTTCACACATTT
TTTAAAACCCAAAAATAATAAATAAATAAATAAACACTTTGCTTTAACTC
CGCCCCCCCCCCCCCTCCCCCCCGTTTCGCTTTCTACGCGCGGCCTGCAT
AAATACATAGGAGCTGGCCAGGGATGTCGTGCTGGCGGTCGTGCCGACCA
AGGCCGTCCTTTTAGCCCCGATAACGTGAGTCGGAGAATACAGCGAAAAC
GTGCATGTAGACTGCCCTTTCGCTTGCAGACCGAGGTGTAAAAATACATA
TATAATACTTCGTACGTATCTGGCACGACCTAGCACGCGAGTCGAAAGAG
TCTCCACCAAGAGTAGGAACTGCTGTGAACGAGATGCCTGGCCAATGACC
GAAGCAACTGGGCGACAGCCGGACAACGAGCACGCCCCCTTTTTTCCTCG
CGCGATTCACGCTGCCTCCGCCTTGTACTCAGCGAGCTCCGCGGCTCTGG
AGGCTCCGCGGGGGCGGTCTTGGCGGGCCGAGCGGAGGCAGCGGGCGCGA
GAAACGTGCCCCCCTTGCTAGAAATCCTGGTGAACCTCTCCTGCGCCGAC
CCGCACGCGGTCGCCGCCTGGCTGACGAGCGGCGTCTCCGACTGGTCGCC
CGGCAGCGCGCTCGCGGGCTTGGAAGCGGAGTTGAACAACAGAGACGAGA
AGGTCTGATGCCGGTATTCTGTGTTCCCGATGCTGCTGCTACAATACGGC
AGTACAGTAGTACAACCAACAACCAGCAGCAGCAGCAGAAAAAACGCCCA
GGAAACGGTCTGTTTCATCACACCTCGAATATTTCTCACAAGGTCAGGTT
TGTTTGGCGCGGTTTGAACGACCCCCCCCATCCATCTCGGTGCGCCTTTC
GGGCGAGGCTAGTTACCAGTTCTCTTTCCACCCGTTTGTGGGGCTTGCGC
AACGCCGCAGAACCTGCAACCTGTTGTGGACCCTCGCAACGACACCGTGC
TTTCTCGCTTCCGATTTGTTTTTTTGGCTTGATGCTCTTCTCTCTGTTGA
CCTGTTAATAAAACGATCAAGCGACGCACGCTTTTTAGCGCGACTGGTGT
TTCCTTTCATTCTCCGGGGCACGTGCGTATGTGCATGAACAGCTAGCTCA
TCTCTCGAGCTAACACACGCCGACGAAAATAGCGCCAGAAATCCGCACGA
AGGTTGAAGGGCGCGTGCTGTCTTGTCTTCGGCAACCCGGCCATCGTGAC
CTGCCAGCGGTTTCCTCACTACGGCCGTCTCATCTTGTCTTGCGCCATTA
ACAGGTTCAAATTTTGGCTGGGCTGGTCCTGGTCAACTGCTTCAAAGGCA
CCAAGACGACTGCGTCCGGCACGGGTACCGCTGCCGCCTCCCCGCCTCCC
CATCTACACCCATCGTCCAATCCCCCCGCCCCCCTGGATGAGGTCATCGC
ACACCGAGTTTTGCCGCTCTTTTTCCGGACGCTCAGCGTGTGGTCCACCC
TTCCATCGTTCGCCGGGTGGAGCGGCGGTGGCGGCGATCACGGTGGGCAC
GGCAGGGGGGAGTACGCGTCCCCGGTTTTTCCGTCCTCGCCGCCGCACGC
CGCCGGGAGCGGTAGCTTCGCGGCGGTGTGCGGCGGCTACGCGGCTGCCG
TGGCGGCCGCGGTGAACGCCTCGGTGGGTCTCAGATCTTGGCAGCAGCAG
CGAGAAGCCGTGGAGTACGGCGCTGTCGACTCCCTCGTGGACTTACTCGG
GAGAGCGCGCGCGGAGGAAAGGGAAATTGCGGCGGCAGGGCTTTCAGCTT
GTTCGGAAAGCGATTCCAGCAGCAGCGCTACCAACGGAGCAAACGCTTCA
CCATCCCGGCCCGAGACGGCCGCTGCTGGTGTCGGCGCTATCGATGTGGA
GTCGAGCCGCTCCAGGGACACGCGCTTCATACGGGCGGCCACTCAGACAG
GGCTGAACGCGCTCGCCACGCTCTGCGCACGCTGCGAGGCCGCCCGCGAG
AGGACGGTGGCGCTCGGCTTCCACTCCACCATCCGGCACTGGTTGGTGGT
GCCCCCGTGGAGGAACGGGACAGGTAACCCACGACCGTCCTGCGGCGGCA
GCGGCAGCGGCGGCGACGGCGGCGGCGGCGGCGGCAACGAGAGTTGGAGG
AGCAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig116:7168..10223-

>mRNA_L-elsbetiae_contig116.1383.1 ID=mRNA_L-elsbetiae_contig116.1383.1|Name=mRNA_L-elsbetiae_contig116.1383.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2934bp|location=Sequence derived from alignment at L-elsbetiae_contig116:7168..10223- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATTTTCTCTCTAGAAGAAGCGGTGGCGGCGGCAACAGTAACAGCAG
CGAGAAGCTGACGGCCACCACACTCAGGGGGATCAGCTCCCTGTGTACGT
GCTTGGTCCCAGCAACGATCACCGGCACCGGTGCGGAGATGGCGAACCAG
GAAAAGTTAAAAACTTTGGCAGCGCTGAAGGAAGTCTCAGGGTTGATTCT
GAACGAGATTGTGACAACTCCAACAGCAAAAAGCGGCGGCGGCGGGGGCG
GGGGCCGAGGTAGACAGTGTTGGCCGCCGAGCTTAATAACACTGGGACTC
GAGGCGCTGGCCGCTATGACGAGAATCGAGATGAATTTTCTCTCTAGAAG
AAGCGGTGGCGGCGGCAACAGTAACAGCAGCGAGAAGCTGACGGCCACCA
CACTCAGGGGGATCAGCTCCCTGTGTACGTGCTTGGTCCCAGCAACGATC
ACCGGCACCGGTGCGGAGATGGCGAACCAGGAAAAGTTAAAAACTTTGGC
AGCGCTGAAGGAAGTCTCAGGGTTGATTCTGAACGAGATTGTGACAACTC
CAACAGCAAAAAGCGGCGGCGGCGGGGGCGGGGGCCGAGGTAGACAGTGT
TGGCCGCCGAGCTTAATAACACTGGGACTCGAGGCGCTGGCCGCTATGAC
GAGAATCGAGGAGCTGGCCAGGGATGTCGTGCTGGCGGTCGTGCCGACCA
AGGCCGTCCTTTTAGCCCCGATAACGAGCTGGCCAGGGATGTCGTGCTGG
CGGTCGTGCCGACCAAGGCCGTCCTTTTAGCCCCGATAACCGAGCTCCGC
GGCTCTGGAGGCTCCGCGGGGGCGGTCTTGGCGGGCCGAGCGGAGGCAGC
GGGCGCGAGAAACGTGCCCCCCTTGCTAGAAATCCTGGTGAACCTCTCCT
GCGCCGACCCGCACGCGGTCGCCGCCTGGCTGACGAGCGGCGTCTCCGAC
TGGTCGCCCGGCAGCGCGCTCGCGGGCTTGGAAGCGGAGTTGAACAACAG
AGACGAGAAGCGAGCTCCGCGGCTCTGGAGGCTCCGCGGGGGCGGTCTTG
GCGGGCCGAGCGGAGGCAGCGGGCGCGAGAAACGTGCCCCCCTTGCTAGA
AATCCTGGTGAACCTCTCCTGCGCCGACCCGCACGCGGTCGCCGCCTGGC
TGACGAGCGGCGTCTCCGACTGGTCGCCCGGCAGCGCGCTCGCGGGCTTG
GAAGCGGAGTTGAACAACAGAGACGAGAAGGTTCAAATTTTGGCTGGGCT
GGTCCTGGTCAACTGCTTCAAAGGCACCAAGACGACTGCGTCCGGCACGG
GTACCGCTGCCGCCTCCCCGCCTCCCCATCTACACCCATCGTCCAATCCC
CCCGCCCCCCTGGATGAGGTCATCGCACACCGAGTTTTGCCGCTCTTTTT
CCGGACGCTCAGCGTGTGGTCCACCCTTCCATCGTTCGCCGGGTGGAGCG
GCGGTGGCGGCGATCACGGTGGGCACGGCAGGGGGGAGTACGCGTCCCCG
GTTTTTCCGTCCTCGCCGCCGCACGCCGCCGGGAGCGGTAGCTTCGCGGC
GGTGTGCGGCGGCTACGCGGCTGCCGTGGCGGCCGCGGTGAACGCCTCGG
TGGGTCTCAGATCTTGGCAGCAGCAGCGAGAAGCCGTGGAGTACGGCGCT
GTCGACTCCCTCGTGGACTTACTCGGGAGAGCGCGCGCGGAGGAAAGGGA
AATTGCGGCGGCAGGGCTTTCAGCTTGTTCGGAAAGCGATTCCAGCAGCA
GCGCTACCAACGGAGCAAACGCTTCACCATCCCGGCCCGAGACGGCCGCT
GCTGGTGTCGGCGCTATCGATGTGGAGTCGAGCCGCTCCAGGGACACGCG
CTTCATACGGGCGGCCACTCAGACAGGGCTGAACGCGCTCGCCACGCTCT
GCGCACGCTGCGAGGCCGCCCGCGAGAGGACGGTGGCGCTCGGCTTCCAC
TCCACCATCCGGCACTGGTTGGTGGTGCCCCCGTGGAGGAACGGGACAGG
TAACCCACGACCGTCCTGCGGCGGCAGCGGCAGCGGCGGCGACGGCGGCG
GCGGCGGCGGCAACGAGAGTTGGAGGAGCAGGGTTCAAATTTTGGCTGGG
CTGGTCCTGGTCAACTGCTTCAAAGGCACCAAGACGACTGCGTCCGGCAC
GGGTACCGCTGCCGCCTCCCCGCCTCCCCATCTACACCCATCGTCCAATC
CCCCCGCCCCCCTGGATGAGGTCATCGCACACCGAGTTTTGCCGCTCTTT
TTCCGGACGCTCAGCGTGTGGTCCACCCTTCCATCGTTCGCCGGGTGGAG
CGGCGGTGGCGGCGATCACGGTGGGCACGGCAGGGGGGAGTACGCGTCCC
CGGTTTTTCCGTCCTCGCCGCCGCACGCCGCCGGGAGCGGTAGCTTCGCG
GCGGTGTGCGGCGGCTACGCGGCTGCCGTGGCGGCCGCGGTGAACGCCTC
GGTGGGTCTCAGATCTTGGCAGCAGCAGCGAGAAGCCGTGGAGTACGGCG
CTGTCGACTCCCTCGTGGACTTACTCGGGAGAGCGCGCGCGGAGGAAAGG
GAAATTGCGGCGGCAGGGCTTTCAGCTTGTTCGGAAAGCGATTCCAGCAG
CAGCGCTACCAACGGAGCAAACGCTTCACCATCCCGGCCCGAGACGGCCG
CTGCTGGTGTCGGCGCTATCGATGTGGAGTCGAGCCGCTCCAGGGACACG
CGCTTCATACGGGCGGCCACTCAGACAGGGCTGAACGCGCTCGCCACGCT
CTGCGCACGCTGCGAGGCCGCCCGCGAGAGGACGGTGGCGCTCGGCTTCC
ACTCCACCATCCGGCACTGGTTGGTGGTGCCCCCGTGGAGGAACGGGACA
GGTAACCCACGACCGTCCTGCGGCGGCAGCGGCAGCGGCGGCGACGGCGG
CGGCGGCGGCGGCAACGAGAGTTGGAGGAGCAGG
back to top