mRNA_L-elsbetiae_contig116.1382.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig116.1382.1
Unique NamemRNA_L-elsbetiae_contig116.1382.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig116.1382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig116contigL-elsbetiae_contig116:3937..5468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_003480.1
Exons2
Model size754
Cds size753
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815363.7355008-CDS-L-elsbetiae_contig116:3936..44521622815363.7355008-CDS-L-elsbetiae_contig116:3936..4452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 3937..4452 -
1691682861.9988875-CDS-L-elsbetiae_contig116:3936..44521691682861.9988875-CDS-L-elsbetiae_contig116:3936..4452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 3937..4452 -
1622815363.7471604-CDS-L-elsbetiae_contig116:5231..54681622815363.7471604-CDS-L-elsbetiae_contig116:5231..5468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 5232..5468 -
1691682862.0110989-CDS-L-elsbetiae_contig116:5231..54681691682862.0110989-CDS-L-elsbetiae_contig116:5231..5468Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig116 5232..5468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig116.1382.1prot_L-elsbetiae_contig116.1382.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig116 3937..5468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig116.1382.1

>prot_L-elsbetiae_contig116.1382.1 ID=prot_L-elsbetiae_contig116.1382.1|Name=mRNA_L-elsbetiae_contig116.1382.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=251bp
FHASGGGRAFNGGHPEPMDVVCRSSDEEVGALVTTTAAGGGGGGGRREDK
AGLGFLRLMEAILSTLAGGGGACDETSCAALSLLHALSAADDSQRAALRT
PRVLHAALAFCAPDATSNGTVTTPGMLPPDAARGSPQESPRGSPQGHQVP
HAAAAAAAPSDGPNPPFGAIAARSPADERATHAPATGTPATARTAARRVP
VPPLSVSANAAARMLLVELLPQPSGDGSHIITAAAAAASASGAGAAGAAQ
A
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mRNA from alignment at L-elsbetiae_contig116:3937..5468-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig116.1382.1 ID=mRNA_L-elsbetiae_contig116.1382.1|Name=mRNA_L-elsbetiae_contig116.1382.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1532bp|location=Sequence derived from alignment at L-elsbetiae_contig116:3937..5468- (Laminarionema elsbetiae ELsaHSoW15)
TTCCATGCTAGCGGCGGGGGTAGGGCTTTCAACGGCGGCCATCCTGAGCC
CATGGACGTTGTTTGCCGAAGCAGCGACGAGGAAGTCGGCGCCCTCGTCA
CGACGACAGCTGCGGGGGGCGGTGGCGGCGGTGGCCGGCGGGAGGACAAA
GCGGGGCTGGGGTTTTTGAGGCTGATGGAGGCCATCTTGAGCACGCTGGC
GGGCGGAGGGGGTGCCTGCGATGAGACCAGCTGCGCGGTAAGATAAAGCG
GCTATGTATGTATGTATGTACAATACTTTTCTTGTGTATAATACTCGTAT
CTGAGCGACTTTGCCTGGACGAAATTCATGTCCGTTGTCACCGTTCCGCA
TTAGCTTCTTGCTGTTCTTGTTTGTTGGCTTCGCATTCGGAGGTGCTTGT
CGTCGAACGGAAATTTCGCGATGCACCCTTTGTTGCAAGGCAGCACTTCC
GATCTTAGCGATGTTGTGCAGCTGTAACTTTCGAGAGTTACGTATTTTTC
GGGGGATCGGCACTTTGGAGGTTGCATCGACCGCGCGAACAGGCACAGGG
CGCTGCCACGACCGCTGTTTACCTTGCTCCTGCAGCAGCACGTGTTGCAC
GTGGTAGCGTGCGGTTTGGCTTTTCGGTGGCTTTCGCTCTGTTCATGTTT
GTCTGTCGAGATCCGGAGCGTCTTGGTTGCCGTATTTTATTCTGTTCTTG
TCGCCTTCTCTGCCCACGGAGACCCCCTCTCGCTGGTTGCATTAGCACGG
AGTACCCACGCCCTTGTTGTTCTCCTCACCCCGTAAAAATACCATGACCC
CAAAGCCCCTGATCTATCTACATCCATATCTATCAACCCGTGACCCACGT
TCTTCGCGGCACGAAAGCATCACACGGCCCGGTACGGTACTGCACCGGCG
CTTTGCAGCCCCCTTTTATTTCCGCCCCCGCCCCCGCCTGGCCCGGCCCC
ACCCCACCGTCTCTCCTCTTTCGCCTGCTGCTGCTGCTGCTGCTGCTGCT
TCTGCCATCGAACCAGGCGCTGAGCTTGCTGCACGCCCTTTCCGCCGCGG
ACGACTCGCAACGAGCCGCCCTGCGCACCCCTCGCGTGCTTCACGCCGCT
CTCGCCTTCTGCGCGCCGGACGCGACTAGCAACGGCACGGTCACGACCCC
CGGCATGCTGCCGCCCGATGCTGCGCGGGGATCGCCGCAGGAATCGCCGC
GGGGGTCACCGCAGGGACATCAGGTTCCGCACGCCGCCGCCGCCGCCGCC
GCCCCGAGCGACGGGCCTAACCCCCCCTTCGGCGCCATCGCGGCAAGAAG
CCCCGCCGACGAAAGAGCAACGCATGCGCCCGCAACGGGGACTCCAGCAA
CGGCGAGAACGGCGGCTAGAAGGGTGCCGGTGCCGCCGCTGTCCGTGTCC
GCGAACGCGGCGGCGCGGATGCTTCTGGTGGAGCTACTGCCGCAACCCTC
GGGCGACGGCAGCCACATCATCACGGCGGCGGCTGCGGCGGCTTCCGCGA
GCGGGGCCGGTGCGGCTGGTGCTGCGCAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig116:3937..5468-

>mRNA_L-elsbetiae_contig116.1382.1 ID=mRNA_L-elsbetiae_contig116.1382.1|Name=mRNA_L-elsbetiae_contig116.1382.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1506bp|location=Sequence derived from alignment at L-elsbetiae_contig116:3937..5468- (Laminarionema elsbetiae ELsaHSoW15)
TTCCATGCTAGCGGCGGGGGTAGGGCTTTCAACGGCGGCCATCCTGAGCC
CATGGACGTTGTTTGCCGAAGCAGCGACGAGGAAGTCGGCGCCCTCGTCA
CGACGACAGCTGCGGGGGGCGGTGGCGGCGGTGGCCGGCGGGAGGACAAA
GCGGGGCTGGGGTTTTTGAGGCTGATGGAGGCCATCTTGAGCACGCTGGC
GGGCGGAGGGGGTGCCTGCGATGAGACCAGCTGCGCGTTCCATGCTAGCG
GCGGGGGTAGGGCTTTCAACGGCGGCCATCCTGAGCCCATGGACGTTGTT
TGCCGAAGCAGCGACGAGGAAGTCGGCGCCCTCGTCACGACGACAGCTGC
GGGGGGCGGTGGCGGCGGTGGCCGGCGGGAGGACAAAGCGGGGCTGGGGT
TTTTGAGGCTGATGGAGGCCATCTTGAGCACGCTGGCGGGCGGAGGGGGT
GCCTGCGATGAGACCAGCTGCGCGGCGCTGAGCTTGCTGCACGCCCTTTC
CGCCGCGGACGACTCGCAACGAGCCGCCCTGCGCACCCCTCGCGTGCTTC
ACGCCGCTCTCGCCTTCTGCGCGCCGGACGCGACTAGCAACGGCACGGTC
ACGACCCCCGGCATGCTGCCGCCCGATGCTGCGCGGGGATCGCCGCAGGA
ATCGCCGCGGGGGTCACCGCAGGGACATCAGGTTCCGCACGCCGCCGCCG
CCGCCGCCGCCCCGAGCGACGGGCCTAACCCCCCCTTCGGCGCCATCGCG
GCAAGAAGCCCCGCCGACGAAAGAGCAACGCATGCGCCCGCAACGGGGAC
TCCAGCAACGGCGAGAACGGCGGCTAGAAGGGTGCCGGTGCCGCCGCTGT
CCGTGTCCGCGAACGCGGCGGCGCGGATGCTTCTGGTGGAGCTACTGCCG
CAACCCTCGGGCGACGGCAGCCACATCATCACGGCGGCGGCTGCGGCGGC
TTCCGCGAGCGGGGCCGGTGCGGCTGGTGCTGCGCAGGCGGCGCTGAGCT
TGCTGCACGCCCTTTCCGCCGCGGACGACTCGCAACGAGCCGCCCTGCGC
ACCCCTCGCGTGCTTCACGCCGCTCTCGCCTTCTGCGCGCCGGACGCGAC
TAGCAACGGCACGGTCACGACCCCCGGCATGCTGCCGCCCGATGCTGCGC
GGGGATCGCCGCAGGAATCGCCGCGGGGGTCACCGCAGGGACATCAGGTT
CCGCACGCCGCCGCCGCCGCCGCCGCCCCGAGCGACGGGCCTAACCCCCC
CTTCGGCGCCATCGCGGCAAGAAGCCCCGCCGACGAAAGAGCAACGCATG
CGCCCGCAACGGGGACTCCAGCAACGGCGAGAACGGCGGCTAGAAGGGTG
CCGGTGCCGCCGCTGTCCGTGTCCGCGAACGCGGCGGCGCGGATGCTTCT
GGTGGAGCTACTGCCGCAACCCTCGGGCGACGGCAGCCACATCATCACGG
CGGCGGCTGCGGCGGCTTCCGCGAGCGGGGCCGGTGCGGCTGGTGCTGCG
CAGGCG
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