mRNA_L-elsbetiae_contig11579.1374.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11579.1374.1
Unique NamemRNA_L-elsbetiae_contig11579.1374.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11579.1374.1 vs. uniprot
Match: D7FP43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP43_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 2.680e-119
Identity = 186/276 (67.39%), Postives = 208/276 (75.36%), Query Frame = 3
Query:  387 ALGEVPVVSAASAGSSHSCVLLDDGSVKCWGENFWGQLGQNDDVVRGKNNLTMGDLLPAVPLGAPSFSAVYVDSGGEFNCALNGGGGVKCWGRNELGQLGLGNNETRGGPSTSDDMGANLPTVNLGTGVIAEKIALGGMHACAVLRGGGLKCWGRNDRGQLGLGDKLNRGDDVNEMGDNLPLVDLGPGVVVTSVALGEVHTCAVIGDGDVKCWGNNDGGQLGYEDALPRGTGEGAGVMGAGLPVVDLGRDQRAIAVAAGFFHTCAMLYTGVIKCWG 1214
            ALG  P   AASAG+SHSCV+L  G +KCWGEN+WGQ+GQND++VRG +   MGD LP VPLG   F A  V SG EF+CAL   G VKCWGRN  GQLGLG+NETRGG   + +MG NLP ++LGTGV  E IAL G HACAVL  G LKCWG N+ GQLGLGD L RG+ + +MGDNLP VDLG  V+V+SVALG  HTCAV+GDGDVKCWGNNDGGQLGYED   RG     G MG  LP VDLG  QRAIAVAAGFFHTCA+LYTG IKCWG
Sbjct:   10 ALGCTPGARAASAGASHSCVVLVGGKIKCWGENYWGQVGQNDNLVRGDDASDMGDSLPYVPLG--EFEASLVASGSEFSCALAVDGAVKCWGRNSSGQLGLGDNETRGGQDDAFEMGDNLPVLDLGTGVAVESIALAGSHACAVLADGNLKCWGENEGGQLGLGDTLTRGNAMGQMGDNLPFVDLGDEVLVSSVALGARHTCAVVGDGDVKCWGNNDGGQLGYEDTAARGIA--VGQMGDLLPAVDLGTKQRAIAVAAGFFHTCALLYTGDIKCWG 281          
BLAST of mRNA_L-elsbetiae_contig11579.1374.1 vs. uniprot
Match: A0A6H5KP75_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP75_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 1.120e-107
Identity = 180/271 (66.42%), Postives = 205/271 (75.65%), Query Frame = 3
Query:  402 PVVSAASAGSSHSCVLLDDGSVKCWGENFWGQLGQNDDVVRGKNNLTMGDLLPAVPLGAPSFSAVYVDSGGEFNCALNGGGGVKCWGRNELGQLGLGNNETRGGPSTSDDMGANLPTVNLGTGVIAEKIALGGMHACAVLRGGGLKCWGRNDRGQLGLGDKLNRGDDVNEMGDNLPLVDLGPGVVVTSVALGEVHTCAVIGDGDVKCWGNNDGGQLGYEDALPRGTGEGAGVMGAGLPVVDLGRDQRAIAVAAGFFHTCAMLYTGVIKCWG 1214
            P   AASAG+SHSC +L  G++KCWGENFWGQ+GQND++VRGKN   MGD LP V LG   F A  V SG EFNCA +  G VKCWGRN  GQLGLG+NETRGG +   +MG +LP V+LGTGV  E I L G HACAV   G +KCWG N+ GQLGLGDKL RG+   +MGD+LP VDLG GV+ +SVALG  HTCAV+ DG VKCWGNNDGGQLGYED   RGT   AG MG  LP VDLGRDQ+A++VAAGFFHTCA+LYTG IKCWG
Sbjct:   96 PAARAASAGASHSCTVLVGGTIKCWGENFWGQVGQNDNLVRGKNASDMGDDLPYVQLGI--FEADMVASGSEFNCARSVDGEVKCWGRNTAGQLGLGDNETRGGVNDVFEMGNDLPVVDLGTGVTVESIGLAGSHACAVTLIGLVKCWGENEGGQLGLGDKLARGNLTGQMGDDLPYVDLGTGVLASSVALGARHTCAVVDDGGVKCWGNNDGGQLGYEDTAARGTA--AGEMGDSLPFVDLGRDQKAVSVAAGFFHTCALLYTGDIKCWG 362          
BLAST of mRNA_L-elsbetiae_contig11579.1374.1 vs. uniprot
Match: D7FQH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH4_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 1.890e-105
Identity = 172/278 (61.87%), Postives = 202/278 (72.66%), Query Frame = 3
Query:  402 PVVSAASAGSSHSCVLLDDGSVKCWGENFWGQLGQNDDVVRGKNNLTMGDLLPAVPLGAPSFSAVYVDSGGEFNCALN-GGGGVKCWGRNELGQLGLGNNETRGGPSTSD-DMGANLPTVNLG--TGVIAEKIALGGMHACAVLRGGGLKCWGRNDRGQLGLGDKLNRGDDVNEMGDNLPLVDLGPGVVVTSVALGEVHTCAVIGDGDVKCWGNNDGGQLGYEDALPRGTG---EGAGVMGAGLPVVDLGRDQRAIAVAAGFFHTCAMLYTGVIKCWG 1214
            P  +A SAGSSHSC +L D +VKC+G+N  GQLGQ D + RG     MGD LP VPLG    +AVY  SG EFNCA++  GG VKCWG+NE GQLGLG+ E RGGP+    +MG NLPTV+    +G+  E ++LGG  ACAVL GG ++CWG N+ GQLGLGD  NRGD+ +EMGD+LP VDLG G VV+SVA+G  H CA + DG VKCWGNNDGGQLGYED LPRGTG   +G G MG  L  VDLG  QRAIAV AGFFHTCA+LY G +KCWG
Sbjct:   23 PPATAVSAGSSHSCAVLSDATVKCFGDNTLGQLGQLDSLSRGLEATDMGDNLPTVPLGTFEAAAVY--SGNEFNCAVSVDGGSVKCWGQNEGGQLGLGDTEARGGPNDDIFEMGENLPTVDFSGNSGLSVESMSLGGSAACAVLTGGSVRCWGANEVGQLGLGDTENRGDEPDEMGDDLPFVDLGTGSVVSSVAVGAKHACATMEDGTVKCWGNNDGGQLGYEDRLPRGTGVEIDGRGGMGDALAAVDLGLGQRAIAVEAGFFHTCALLYEGDVKCWG 298          
BLAST of mRNA_L-elsbetiae_contig11579.1374.1 vs. uniprot
Match: A0A6H5JFU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU1_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 1.940e-100
Identity = 171/278 (61.51%), Postives = 202/278 (72.66%), Query Frame = 3
Query:  402 PVVSAASAGSSHSCVLLDDGSVKCWGENFWGQLGQNDDVVRGKNNLTMGDLLPAVPLGAPSFSAVYVDSGGEFNCALN-GGGGVKCWGRNELGQLGLGNNETRGGPSTSD-DMGANLPTVNLG--TGVIAEKIALGGMHACAVLRGGGLKCWGRNDRGQLGLGDKLNRGDDVNEMGDNLPLVDLGPGVVVTSVALGEVHTCAVIGDGDVKCWGNNDGGQLGYEDALPRGTG---EGAGVMGAGLPVVDLGRDQRAIAVAAGFFHTCAMLYTGVIKCWG 1214
            P V+A SAGSSHSC +L D +VKC+G+N  GQLGQ D + RG N   MGD LP VPLG    +AVY  SG EFNCA++  G  VKCWG+N+ GQLGLG+ E RGG +    +MG NLPTV+    +G+  E ++LGG  ACA+L GG ++CWG N+ GQLGLGD  NRGD+ +EMGD+LP VDLG G VV+SVA+G  H CA + DG VKCWGNNDGGQLGYED LPRGTG   +G G MG  L  VDLG  QRAIAV AGFFHTCA+LY G IKCWG
Sbjct:   21 PPVTAVSAGSSHSCAVLSDATVKCFGDNLLGQLGQLDSLSRGLNATDMGDNLPTVPLGTFQAAAVY--SGNEFNCAVSVDGDSVKCWGQNDGGQLGLGDTEARGGLNDEVFEMGENLPTVDFSGNSGLSVESMSLGGSAACALLTGGSVRCWGANEAGQLGLGDTENRGDEPDEMGDDLPFVDLGTGAVVSSVAVGAKHACATMEDGVVKCWGNNDGGQLGYEDRLPRGTGVEIDGVGGMGDALAAVDLGLGQRAIAVEAGFFHTCALLYEGDIKCWG 296          
BLAST of mRNA_L-elsbetiae_contig11579.1374.1 vs. uniprot
Match: A0A017SY21_9DELT (Uncharacterized protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017SY21_9DELT)

HSP 1 Score: 260 bits (664), Expect = 1.130e-76
Identity = 144/279 (51.61%), Postives = 167/279 (59.86%), Query Frame = 3
Query:  387 ALGEVPVVSAASAGSSHSCVLLDDGSVKCWGENFWGQLGQNDDVVRGKNNLTMGDLLPAVPLGAPSFSAVYVDSGGEFNCALNGGGGVKCWGRNELGQLGLGNNETRGGPSTSDDMGANLPTVNLGTGVIAEKIALGGMHACAVLRGGGLKCWGRNDRGQLGLGDKLNRGDDVNEMGDNLPLVDLGPGVVVTSVALGEVHTCAVIGDGDVKCWGNNDG-GQLGYEDALPRGTGEGAGVMGAGLPVVDLGRDQRAIAVAAGFFHTCAMLYTGVIKCWGGS 1220
            ALG      A SA   H+C +L+DGSVKCWG N  GQLG  D + RG +   MGD LPAV LG    SA+ V + G   C L  GG VKCWG N  GQLGLG+  +RG  ++  DMG NLP VNLGTG  A  ++ G  + CAVL  G +KCWG ND GQLGLGD  NRG     MGDNLP+V+LG G   T V+ G  HTCAV+ D  +KCWG N   GQLG  D   RGT   A  MG  LP V+LG    A  V     HTCA+L  G +KCWG S
Sbjct:  379 ALGTAKTAVAVSAAGEHTCAVLNDGSVKCWGNNDSGQLGLGDTLSRGGDTAQMGDSLPAVALGTGQ-SAIAVSAAGGHTCVLLNGGSVKCWGYNTYGQLGLGSPASRG--TSPSDMGNNLPAVNLGTGKTATLVSAGSQYTCAVLNDGSVKCWGNNDYGQLGLGDTFNRGTGSTSMGDNLPVVNLGTGKTATLVSAGGRHTCAVLNDSTIKCWGYNSSVGQLGLGDTASRGTS--AAQMGNNLPAVNLGTSVSATLVDTSADHTCALLGAGNLKCWGAS 652          
BLAST of mRNA_L-elsbetiae_contig11579.1374.1 vs. uniprot
Match: A0A0K1EHP4_CHOCO (Uncharacterized protein n=2 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1EHP4_CHOCO)

HSP 1 Score: 258 bits (659), Expect = 1.260e-76
Identity = 144/266 (54.14%), Postives = 165/266 (62.03%), Query Frame = 3
Query:  426 GSSHSCVLLDDGSVKCWGENFWGQLGQNDDVVRGKNNLTMGDLLPAVPLGAPSFSAVYVDSGGEFNCALNGGGGVKCWGRNELGQLGLGNNETRG-GPSTSDDMGANLPTVNLGTGVIAEKIALGGMHACAVLRGGGLKCWGRNDRGQLGLGDKLNRGDDVNEMGDNLPLVDLGPGVVVTSVALGEVHTCAVIGDGDVKCWGNNDGGQLGYEDALPRGTGEGAGVMGAGLPVVDLGRDQRAIAVAAGFFHTCAMLYTGVIKCWGGS 1220
            G  H+C LL DG VKCWG N  GQLG  D   RG     MGD LPAV LG    + V + +G    CAL GGG VKCWG N  GQLGLG+   RG GP    +MG  LPTVNLGTG  A  I  G  H CA+L  G +KCWG N  G+LGLGD   RGD   EMGD L  VDLG G    ++++G  H CA++ DG VKCWG N  GQLG  DA  RG  +GAG MG  LP VDLG  + A+AV AG FHTCA+L  G +KCWGG+
Sbjct:  199 GYDHACALLHDGRVKCWGRNVQGQLGLGDTEPRGDAADEMGDALPAVDLGT-GVTVVGLAAGDNHTCALLGGGSVKCWGANTSGQLGLGDTAPRGDGPG---EMGDALPTVNLGTGRTALAIGGGDRHTCALLDDGSVKCWGFNTGGKLGLGDTAPRGDGPGEMGDALLAVDLGAGRTAAALSVGGSHACALLDDGSVKCWGGNGQGQLGLGDAEHRG--DGAGEMGDALPAVDLGTGKTAVAVHAGHFHTCALLNDGSLKCWGGN 458          
BLAST of mRNA_L-elsbetiae_contig11579.1374.1 vs. uniprot
Match: A0A835T669_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T669_9CHLO)

HSP 1 Score: 254 bits (649), Expect = 1.330e-76
Identity = 139/277 (50.18%), Postives = 169/277 (61.01%), Query Frame = 3
Query:  387 ALGEVPVVSAASAGSSHSCVLLDDGSVKCWGENFWGQLGQNDDVVRGKNNLTMGDLLPAVPLGAPSFSAVYVDSGGEFNCALNGGGGVKCWGRNELGQLGLGNNETRG-GPSTSDDMGANLPTVNLGTGVIAEKIALGGMHACAVLRGGGLKCWGRNDRGQLGLGDKLNRGDDVNEMGDNLPLVDLGPGVVVTSVALGEVHTCAVIGDGDVKCWGNNDGGQLGYEDALPRGTGEGAGVMGAGLPVVDLGRDQRAIAVAAGFFHTCAMLYTGVIKCWG 1214
            ALG     +A SAG  H+C LLD+GS+KCWG N  GQLG  D   RG     MGD LPA+ LG    +A  +  GG   CAL   G VKCWG N  GQLGLG+   RG GP    +MG  LP + LGTG  A  I++GG H CA+L  G +KCWG N  GQLGLGD  +RGD   EMGD LP + LG G    +++ G  HTCA++ +G VKCWG N  GQLG  D   R   +G G MG  LP V LG  + A A++AG++HTCA+L  G +KCWG
Sbjct:   97 ALGTGRTATAISAGFLHTCALLDNGSIKCWGYNNAGQLGLGDTSSRGDGPGEMGDTLPAITLGTGR-TATAISVGGIHTCALLDNGSVKCWGYNAYGQLGLGDTSDRGDGPG---EMGDTLPAITLGTGRTAAAISVGGYHTCALLDNGSIKCWGYNAYGQLGLGDTSSRGDGPGEMGDTLPAITLGTGRTAKAISAGGYHTCALLDNGSVKCWGANGNGQLGLGDTSYRS--DGPGEMGDTLPAVVLGTGRTATAISAGYYHTCALLDNGYVKCWG 367          
BLAST of mRNA_L-elsbetiae_contig11579.1374.1 vs. uniprot
Match: A0A017T228_9DELT (BNR repeat domain protein n=1 Tax=Chondromyces apiculatus DSM 436 TaxID=1192034 RepID=A0A017T228_9DELT)

HSP 1 Score: 249 bits (637), Expect = 9.940e-75
Identity = 140/271 (51.66%), Postives = 170/271 (62.73%), Query Frame = 3
Query:  414 AASAGSSHSCVLLDDGSVKCWGENFWGQLGQNDDVVRGKNNLTMGDLLPAVPLGA-PSFSAVYVDSGGEFNCALNGGGGVKCWGRNELGQLGLGNNETRG-GPSTSDDMGANLPTVNLGTGVIAEKIALGGMHACAVLRGGGLKCWGRNDRGQLGLGDKLNRGDDVNEMGDNLPLVDLGPGVVVTSVALGEVHTCAVIGDGDVKCWGNNDGGQLGYEDALPRGTGEGAGVMGAGLPVVDLG--RDQRAIAVAAGFFHTCAMLYTGVIKCWG 1214
            A +AG SH+C LLDD SVKCWG N +G+LGQ D   RG     MGD LP +  G+ P+ +A+ V  G    CAL   G VKCWG  + G+LGLG   +RG GP    +MGA LPTV+LGTG  A+ IA+GG H CA+L    +KCWG N RGQLGLGD  +RG    EMGD+LP+VDLG G    ++A G  HTCA++ DG +KCWGN   G+LG  D   RG  +  G MG  L  +DLG    Q  I V AG FHTCA L  G +KCWG
Sbjct:  128 AIAAGGSHTCALLDDTSVKCWGSNAFGELGQGDVASRGDAPGEMGDALPPIDFGSGPAVTALSV--GYRHACALFSDGSVKCWGSGQGGRLGLGTTTSRGDGPG---EMGAALPTVDLGTGHTAKAIAVGGFHTCAILDDDSVKCWGANGRGQLGLGDLASRGAAAGEMGDDLPIVDLGTGRTAVAIATGNEHTCALLDDGALKCWGNGFNGRLGTGDQEHRG--DDPGEMGDALLAIDLGLGAGQTVIGVTAGDFHTCARLTGGAVKCWG 391          
BLAST of mRNA_L-elsbetiae_contig11579.1374.1 vs. uniprot
Match: A0A0K1EC22_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1EC22_CHOCO)

HSP 1 Score: 245 bits (625), Expect = 2.890e-73
Identity = 134/275 (48.73%), Postives = 169/275 (61.45%), Query Frame = 3
Query:  390 LGEVPVVSAASAGSSHSCVLLDDGSVKCWGENFWGQLGQNDDVVRGKNNLTMGDLLPAVPLGAPSFSAVYVDSGGEFNCALNGGGGVKCWGRNELGQLGLGNNETRGGPSTSDDMGANLPTVNLGTGVIAEKIALGGMHACAVLRGGGLKCWGRNDRGQLGLGDKLNRGDDVNEMGDNLPLVDLGPGVVVTSVALGEVHTCAVIGDGDVKCWGNNDGGQLGYEDALPRGTGEGAGVMGAGLPVVDLGRDQRAIAVAAGFFHTCAMLYTGVIKCWG 1214
            LG    V A +AG  H+C LL  G VKCWG+N +GQLG  D   RG     MG+ LP V LG    +AV + +G    CAL   G VKCWG N  GQLGLG+ E RG    +DDMG  LP V+LG G     +A G  H CA+LRGG +KCWG N   QLG+GD  +RG    EMG+ LP VDLG G V  ++A G+ HTCA++ +G +KCWG ND  QLG+ED++    G  A  MG  LPVV++G  +    V AG +HTCA + +GV++CWG
Sbjct:   90 LGRDREVVAVAAGGGHTCALLRGGDVKCWGDNRFGQLGLGDSRSRGDGPGEMGNRLPVVDLGRGK-TAVALVAGWAHTCALLSEGTVKCWGENRFGQLGLGDVEHRG--DDADDMGDALPEVDLGAGAEVVSLAAGSAHTCALLRGGEVKCWGYNGYYQLGIGDYGDRGGAEGEMGNRLPRVDLGTGQVAVALAAGQDHTCALLREGKLKCWGTNDARQLGFEDSMY--AGGSAKTMGDNLPVVEVGAGEVIARVVAGSYHTCAQMVSGVVRCWG 359          
BLAST of mRNA_L-elsbetiae_contig11579.1374.1 vs. uniprot
Match: A0A0K1EC39_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1EC39_CHOCO)

HSP 1 Score: 245 bits (625), Expect = 5.280e-73
Identity = 141/278 (50.72%), Postives = 172/278 (61.87%), Query Frame = 3
Query:  390 LGEVPVVSAASAGSSHSCVLLDDGSVKCWGENFWGQLGQNDDVVRGKNNLTMGDLLPAVPLGAPSFSAVYVDSGGEFNCALNGGGGVKCWGRNELGQLGLGNNETRGG-PSTSDDMGANLPTVNLGTGVIAEKIALGGMHACAVLRGGGLKCWGRNDRGQLGLGDKLNRGDDVNEMGDNLPLVDLGPGVVVTSVALGEVHTCAVIGDGDVKCWGNNDGGQLGYEDALPRGTGEGAGVMGAGLPVVDLGRDQRAIAVAAGFFHTCAMLYTGVIKCWGGS 1220
            LG    V A +AGS H C LL  G VKCWG N  G LG  D   RG +  +MG+ LP V LG    +AV + +GGE NCAL     +KCWG N  GQLGLG+   RG  P T   MG +LP V+LG       + +G  H CA+L  G +KCWG N  GQLGLGD  +RGD   EMGD LP VDLG G +V ++ALG +H+CA++ DG VKCWG+N+ GQLG  D   RG  +  G MG  LP VDLG  +RA+A+ AG  HTCA+L  G +KCWG S
Sbjct:  119 LGTGETVEALAAGSFHHCALLRGGRVKCWGGNASGSLGLGDGEGRGLDVGSMGENLPTVDLGT-GVTAVALVAGGETNCALLPDRTLKCWGDNGYGQLGLGDVTPRGNLPGT---MGDDLPAVDLGVDGAGTAVFMGAAHVCALLTRGAVKCWGANGHGQLGLGDADHRGDAPGEMGDALPDVDLGAGNLVAALALGRMHSCALLKDGSVKCWGDNERGQLGLGDTELRG--DAPGEMGDALPRVDLGSGKRAVAITAGDLHTCALLDDGSLKCWGDS 390          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11579.1374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP43_ECTSI2.680e-11967.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP75_9PHAE1.120e-10766.42Protein kinase domain-containing protein n=2 Tax=E... [more]
D7FQH4_ECTSI1.890e-10561.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFU1_9PHAE1.940e-10061.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A017SY21_9DELT1.130e-7651.61Uncharacterized protein n=2 Tax=Chondromyces apicu... [more]
A0A0K1EHP4_CHOCO1.260e-7654.14Uncharacterized protein n=2 Tax=Chondromyces croca... [more]
A0A835T669_9CHLO1.330e-7650.18Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A017T228_9DELT9.940e-7551.66BNR repeat domain protein n=1 Tax=Chondromyces api... [more]
A0A0K1EC22_CHOCO2.890e-7348.73Uncharacterized protein n=1 Tax=Chondromyces croca... [more]
A0A0K1EC39_CHOCO5.280e-7350.72Uncharacterized protein n=1 Tax=Chondromyces croca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11579contigL-elsbetiae_contig11579:1329..3144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.9
Seed ortholog evalue5.7e-99
Seed eggNOG ortholog2880.D7FP43
Preferred nameRCCD1
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1220
Cds size1104
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11579.1374.1prot_L-elsbetiae_contig11579.1374.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11579 1445..3144 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815362.7420974-UTR-L-elsbetiae_contig11579:1328..14441622815362.7420974-UTR-L-elsbetiae_contig11579:1328..1444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11579 1329..1444 +
1691682861.3653617-UTR-L-elsbetiae_contig11579:1328..14441691682861.3653617-UTR-L-elsbetiae_contig11579:1328..1444Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11579 1329..1444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815362.752332-CDS-L-elsbetiae_contig11579:1444..23541622815362.752332-CDS-L-elsbetiae_contig11579:1444..2354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11579 1445..2354 +
1691682861.3837082-CDS-L-elsbetiae_contig11579:1444..23541691682861.3837082-CDS-L-elsbetiae_contig11579:1444..2354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11579 1445..2354 +
1622815362.7631192-CDS-L-elsbetiae_contig11579:2950..31441622815362.7631192-CDS-L-elsbetiae_contig11579:2950..3144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11579 2951..3144 +
1691682861.4024203-CDS-L-elsbetiae_contig11579:2950..31441691682861.4024203-CDS-L-elsbetiae_contig11579:2950..3144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11579 2951..3144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11579.1374.1

>prot_L-elsbetiae_contig11579.1374.1 ID=prot_L-elsbetiae_contig11579.1374.1|Name=mRNA_L-elsbetiae_contig11579.1374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=368bp
MESPAARLVCADRRRRRRRNHHCSSSSSGSSGSGSSRDPAACRRRPAGQL
ARLSSGTVAPGQGGGRFSSRPARATRTAVAAAVLAAVGLAALGEVPVVSA
ASAGSSHSCVLLDDGSVKCWGENFWGQLGQNDDVVRGKNNLTMGDLLPAV
PLGAPSFSAVYVDSGGEFNCALNGGGGVKCWGRNELGQLGLGNNETRGGP
STSDDMGANLPTVNLGTGVIAEKIALGGMHACAVLRGGGLKCWGRNDRGQ
LGLGDKLNRGDDVNEMGDNLPLVDLGPGVVVTSVALGEVHTCAVIGDGDV
KCWGNNDGGQLGYEDALPRGTGEGAGVMGAGLPVVDLGRDQRAIAVAAGF
FHTCAMLYTGVIKCWGGS
back to top

mRNA from alignment at L-elsbetiae_contig11579:1329..3144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11579.1374.1 ID=mRNA_L-elsbetiae_contig11579.1374.1|Name=mRNA_L-elsbetiae_contig11579.1374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1816bp|location=Sequence derived from alignment at L-elsbetiae_contig11579:1329..3144+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAAGAGAAGCTACACCACAGCTGTGTGGTCGCTCGGGACATTCGGCT ACCCTCCAATCCACACTTTAGCGGCGCACGGGACCCCCCCCCCTCCCCGG GGCGCCACCACCAAATATGGAGTCTCCTGCGGCACGGCTGGTATGTGCCG ACCGCCGCCGACGGCGGCGGCGGAATCATCATTGTTCCAGCAGCAGTAGC GGCAGCAGCGGTAGCGGCAGCAGCAGAGACCCCGCCGCCTGTCGTCGACG ACCGGCGGGGCAGCTAGCTCGTCTAAGTTCAGGCACTGTAGCCCCGGGGC AGGGTGGTGGGCGGTTCTCGAGCCGCCCCGCGCGGGCGACGCGGACGGCG GTGGCGGCGGCAGTCCTCGCCGCCGTCGGGCTAGCCGCCCTCGGCGAGGT CCCCGTGGTATCGGCCGCGTCTGCGGGGTCGTCGCACTCCTGCGTGCTCC TCGACGACGGGTCGGTCAAGTGCTGGGGCGAGAACTTCTGGGGCCAGCTG GGGCAGAACGACGACGTGGTCCGCGGGAAGAACAACCTGACCATGGGGGA CTTGCTCCCCGCGGTGCCCCTGGGGGCGCCGTCGTTTTCGGCGGTCTACG TGGACTCGGGCGGGGAGTTCAACTGCGCGCTGAACGGCGGTGGGGGCGTG AAGTGCTGGGGCCGGAACGAGCTCGGGCAGCTGGGACTGGGGAACAACGA GACCAGGGGAGGGCCGTCCACCTCCGACGACATGGGCGCCAACCTGCCGA CGGTGAACCTGGGGACCGGGGTCATCGCGGAGAAGATCGCGCTGGGAGGT ATGCACGCCTGCGCCGTGCTTCGCGGGGGCGGGCTGAAGTGCTGGGGCCG GAACGACCGGGGCCAGCTGGGCCTGGGCGACAAGCTCAACAGGGGTGACG ACGTGAACGAGATGGGAGACAACCTCCCGTTGGTGGACCTGGGCCCGGGC GTGGTGGTGACGTCGGTCGCGCTGGGGGAGGTGCACACGTGCGCGGTTAT CGGCGACGGGGACGTCAAGTGCTGGGGTGAGAGAGAGAGAGAGAGCGCGC GCGGAGGAGGAGGGACGGAAGGATGGGAGGGAGGGGATCATCGTGCTTGT TGCCGGTTAATTTTTTTGTTTTTTGGTGGTTTCGTTGGTGTTGCTGCTGC TGCTGCTGCCGTTGGTTGTGGTGGTGACAATGGCGTTGTTGTCTTGTGCG AGAAAAGATATTTCCGGGAAAAAACGCTCTTGTGAAGGACAGACACGCTT AAAAACCCTCACTTTCGCACCGTACCCCCAGCCACGGCAGAGCAGTGGCA CAAAATCAACCATTTGTCGCCGGGTTTTTTTCCTCCGGCCGCACCACAAA CACGTGTGTGTACAAATATACTTTTAAGCACCAGGGGCCAACAACGGGGC AGGGTCAGCCAGCACAGACCCCCCCCCCCACCCCGAAATCCTCCATTTTC TGACCACGAGGGTATGTATTCTTGGTGTTTTTTCTTGTACCAGGGGGGCC AATGACTGGAGTCAGCCACCACAGACCTCCCCCCCCACACACACACACCC GAAATCCTCCATTTTTTAACCACGAGGGTACATACCTATATTTGTTGTCT TTTCTTGTGCGACTGGTACCAGGGAACAACGACGGGGGTCAGCTGGGGTA CGAGGACGCGCTTCCCCGGGGCACCGGCGAGGGGGCCGGGGTGATGGGGG CCGGTCTCCCCGTGGTGGACCTCGGCCGGGACCAGAGAGCGATCGCGGTG GCAGCGGGGTTCTTCCACACGTGCGCGATGCTGTACACGGGCGTCATCAA GTGCTGGGGTGGGTCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11579:1329..3144+

>mRNA_L-elsbetiae_contig11579.1374.1 ID=mRNA_L-elsbetiae_contig11579.1374.1|Name=mRNA_L-elsbetiae_contig11579.1374.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2208bp|location=Sequence derived from alignment at L-elsbetiae_contig11579:1329..3144+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGTCTCCTGCGGCACGGCTGGTATGTGCCGACCGCCGCCGACGGCG
GCGGCGGAATCATCATTGTTCCAGCAGCAGTAGCGGCAGCAGCGGTAGCG
GCAGCAGCAGAGACCCCGCCGCCTGTCGTCGACGACCGGCGGGGCAGCTA
GCTCGTCTAAGTTCAGGCACTGTAGCCCCGGGGCAGGGTGGTGGGCGGTT
CTCGAGCCGCCCCGCGCGGGCGACGCGGACGGCGGTGGCGGCGGCAGTCC
TCGCCGCCGTCGGGCTAGCCGCCCTCGGCGAGGTCCCCGTGGTATCGGCC
GCGTCTGCGGGGTCGTCGCACTCCTGCGTGCTCCTCGACGACGGGTCGGT
CAAGTGCTGGGGCGAGAACTTCTGGGGCCAGCTGGGGCAGAACGACGACG
TGGTCCGCGGGAAGAACAACCTGACCATGGGGGACTTGCTCCCCGCGGTG
CCCCTGGGGGCGCCGTCGTTTTCGGCGGTCTACGTGGACTCGGGCGGGGA
GTTCAACTGCGCGCTGAACGGCGGTGGGGGCGTGAAGTGCTGGGGCCGGA
ACGAGCTCGGGCAGCTGGGACTGGGGAACAACGAGACCAGGGGAGGGCCG
TCCACCTCCGACGACATGGGCGCCAACCTGCCGACGGTGAACCTGGGGAC
CGGGGTCATCGCGGAGAAGATCGCGCTGGGAGGTATGCACGCCTGCGCCG
TGCTTCGCGGGGGCGGGCTGAAGTGCTGGGGCCGGAACGACCGGGGCCAG
CTGGGCCTGGGCGACAAGCTCAACAGGGGTGACGACGTGAACGAGATGGG
AGACAACCTCCCGTTGGTGGACCTGGGCCCGGGCGTGGTGGTGACGTCGG
TCGCGCTGGGGGAGGTGCACACGTGCGCGGTTATCGGCGACGGGGACGTC
AAGTGCTGGGATGGAGTCTCCTGCGGCACGGCTGGTATGTGCCGACCGCC
GCCGACGGCGGCGGCGGAATCATCATTGTTCCAGCAGCAGTAGCGGCAGC
AGCGGTAGCGGCAGCAGCAGAGACCCCGCCGCCTGTCGTCGACGACCGGC
GGGGCAGCTAGCTCGTCTAAGTTCAGGCACTGTAGCCCCGGGGCAGGGTG
GTGGGCGGTTCTCGAGCCGCCCCGCGCGGGCGACGCGGACGGCGGTGGCG
GCGGCAGTCCTCGCCGCCGTCGGGCTAGCCGCCCTCGGCGAGGTCCCCGT
GGTATCGGCCGCGTCTGCGGGGTCGTCGCACTCCTGCGTGCTCCTCGACG
ACGGGTCGGTCAAGTGCTGGGGCGAGAACTTCTGGGGCCAGCTGGGGCAG
AACGACGACGTGGTCCGCGGGAAGAACAACCTGACCATGGGGGACTTGCT
CCCCGCGGTGCCCCTGGGGGCGCCGTCGTTTTCGGCGGTCTACGTGGACT
CGGGCGGGGAGTTCAACTGCGCGCTGAACGGCGGTGGGGGCGTGAAGTGC
TGGGGCCGGAACGAGCTCGGGCAGCTGGGACTGGGGAACAACGAGACCAG
GGGAGGGCCGTCCACCTCCGACGACATGGGCGCCAACCTGCCGACGGTGA
ACCTGGGGACCGGGGTCATCGCGGAGAAGATCGCGCTGGGAGGTATGCAC
GCCTGCGCCGTGCTTCGCGGGGGCGGGCTGAAGTGCTGGGGCCGGAACGA
CCGGGGCCAGCTGGGCCTGGGCGACAAGCTCAACAGGGGTGACGACGTGA
ACGAGATGGGAGACAACCTCCCGTTGGTGGACCTGGGCCCGGGCGTGGTG
GTGACGTCGGTCGCGCTGGGGGAGGTGCACACGTGCGCGGTTATCGGCGA
CGGGGACGTCAAGTGCTGGGGGAACAACGACGGGGGTCAGCTGGGGTACG
AGGACGCGCTTCCCCGGGGCACCGGCGAGGGGGCCGGGGTGATGGGGGCC
GGTCTCCCCGTGGTGGACCTCGGCCGGGACCAGAGAGCGATCGCGGTGGC
AGCGGGGTTCTTCCACACGTGCGCGATGCTGTACACGGGCGTCATCAAGT
GCTGGGGTGGGTCTGGAACAACGACGGGGGTCAGCTGGGGTACGAGGACG
CGCTTCCCCGGGGCACCGGCGAGGGGGCCGGGGTGATGGGGGCCGGTCTC
CCCGTGGTGGACCTCGGCCGGGACCAGAGAGCGATCGCGGTGGCAGCGGG
GTTCTTCCACACGTGCGCGATGCTGTACACGGGCGTCATCAAGTGCTGGG
GTGGGTCT
back to top