mRNA_L-elsbetiae_contig11576.1372.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11576.1372.1
Unique NamemRNA_L-elsbetiae_contig11576.1372.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11576.1372.1 vs. uniprot
Match: D7FYZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ7_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.210e-21
Identity = 68/132 (51.52%), Postives = 80/132 (60.61%), Query Frame = -1 
Query:    4 AVAEFELPDRERLGEGTVGVAAQSARPVCIEVVYPSPGAXXXXXXXXXXXXXXVDATATTLDASSTTFAGMASTVLCLPVMVQSAPLPRASSTG--GITGDGDXXXGGIKGGSMIPSVEVVGVLRAARAGTG 393
            A+AEFE+P  E LG+GTVGVAAQSARPVCIEVV P+                      T   ASS    G +STVLC+PVM+Q+APLP+ ++T   G  G      GG    S IP VEVVGVLRAAR+GTG
Sbjct:   84 ALAEFEVPHSEHLGDGTVGVAAQSARPVCIEVVCPTAERRGFNGGRE----------GTAAVASSPDPCGASSTVLCIPVMLQAAPLPKVATTPATGFVGAPPPALGG----STIPGVEVVGVLRAARSGTG 201
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BLAST of mRNA_L-elsbetiae_contig11576.1372.1 vs. uniprot
Match: A0A6H5K3T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.190e-18
Identity = 64/129 (49.61%), Postives = 76/129 (58.91%), Query Frame = -1 
Query:    4 VAEFELPDRERLGEGTVGVAAQSARPVCIEVVYPSPGAXXXXXXXXXXXXXXVDATATTLDASSTTFAGMASTVLCLPVMVQSAPLPRASSTGGITGDGDXXXGGIKGGSMIPSVEVVGVLRAARAGTG 390
            +A+FE+P  E LG+GTVGVAAQSARPVCIEVV P+                      T   A S    G +STVLC+PVM+Q+APL    +T   TG        ++G S IP VEVVGVLRAARAGTG
Sbjct: 2156 LADFEVPHSEHLGDGTVGVAAQSARPVCIEVVCPTAERRGFNGGREE----------TAAVAGSPDPCGASSTVLCIPVMLQAAPLLPKVATTPATGFVGAPPPTLRG-STIPGVEVVGVLRAARAGTG 2273
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11576.1372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYZ7_ECTSI1.210e-2151.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3T9_9PHAE2.190e-1849.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11576contigL-elsbetiae_contig11576:4027..4448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size422
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815362.620832-CDS-L-elsbetiae_contig11576:4026..44461622815362.620832-CDS-L-elsbetiae_contig11576:4026..4446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11576 4027..4446 +
1691682861.3046432-CDS-L-elsbetiae_contig11576:4026..44461691682861.3046432-CDS-L-elsbetiae_contig11576:4026..4446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11576 4027..4446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11576.1372.1prot_L-elsbetiae_contig11576.1372.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11576 4027..4446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11576.1372.1

>prot_L-elsbetiae_contig11576.1372.1 ID=prot_L-elsbetiae_contig11576.1372.1|Name=mRNA_L-elsbetiae_contig11576.1372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
GARAGPRRSQHPDDLHAGNHRSSLDPSTIAIAVPRYSPRRRRSRQRRRLN
HDRQAQHRRRHAGKGRRRRVQRRRRRVHRRRRRSCVPTRTAARPGRRVDD
FDANGPCRLRSDPDRALSQALSVGEFKLRHGRRRHRRRRL
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mRNA from alignment at L-elsbetiae_contig11576:4027..4448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11576.1372.1 ID=mRNA_L-elsbetiae_contig11576.1372.1|Name=mRNA_L-elsbetiae_contig11576.1372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=422bp|location=Sequence derived from alignment at L-elsbetiae_contig11576:4027..4448+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGCCCGTGCCGGCCCGCGCCGCTCGCAGCACCCCGACGACCTCCACGC
TGGGAATCATCGATCCTCCCTTGATCCCTCCACCATCGCCATCGCCGTCC
CCCGTTATTCCCCCCGTCGAAGACGCTCTCGGCAGCGGCGCCGACTGAAC
CATGACCGGCAGGCACAACACCGTCGACGCCATGCCGGCAAAGGTCGTAG
ACGACGCGTCCAGCGTCGTCGCCGTCGCGTCCACCGCCGCCGCCGCCGCA
GCTGCGTGCCCACCCGCACCGCAGCCCGCCCCGGGCGAAGGGTAGACGAC
TTCGATGCAAACGGGCCGTGCCGACTGCGCAGCGACCCCGACCGTGCCCT
CTCCCAAGCGCTCTCGGTCGGGGAGTTCAAACTCCGCCACGGCCGCCGCC
GCCATCGCCGCCGCCGACTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11576:4027..4448+

>mRNA_L-elsbetiae_contig11576.1372.1 ID=mRNA_L-elsbetiae_contig11576.1372.1|Name=mRNA_L-elsbetiae_contig11576.1372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig11576:4027..4448+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGCCCGTGCCGGCCCGCGCCGCTCGCAGCACCCCGACGACCTCCACGC
TGGGAATCATCGATCCTCCCTTGATCCCTCCACCATCGCCATCGCCGTCC
CCCGTTATTCCCCCCGTCGAAGACGCTCTCGGCAGCGGCGCCGACTGAAC
CATGACCGGCAGGCACAACACCGTCGACGCCATGCCGGCAAAGGTCGTAG
ACGACGCGTCCAGCGTCGTCGCCGTCGCGTCCACCGCCGCCGCCGCCGCA
GCTGCGTGCCCACCCGCACCGCAGCCCGCCCCGGGCGAAGGGTAGACGAC
TTCGATGCAAACGGGCCGTGCCGACTGCGCAGCGACCCCGACCGTGCCCT
CTCCCAAGCGCTCTCGGTCGGGGAGTTCAAACTCCGCCACGGCCGCCGCC
GCCATCGCCGCCGCCGACTCGGCGCCCGTGCCGGCCCGCGCCGCTCGCAG
CACCCCGACGACCTCCACGCTGGGAATCATCGATCCTCCCTTGATCCCTC
CACCATCGCCATCGCCGTCCCCCGTTATTCCCCCCGTCGAAGACGCTCTC
GGCAGCGGCGCCGACTGAACCATGACCGGCAGGCACAACACCGTCGACGC
CATGCCGGCAAAGGTCGTAGACGACGCGTCCAGCGTCGTCGCCGTCGCGT
CCACCGCCGCCGCCGCCGCAGCTGCGTGCCCACCCGCACCGCAGCCCGCC
CCGGGCGAAGGGTAGACGACTTCGATGCAAACGGGCCGTGCCGACTGCGC
AGCGACCCCGACCGTGCCCTCTCCCAAGCGCTCTCGGTCGGGGAGTTCAA
ACTCCGCCACGGCCGCCGCCGCCATCGCCGCCGCCGACTC
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