mRNA_L-elsbetiae_contig11572.1366.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.760e-36 Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 3 Query: 558 GMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGGPEVLITDADAALTNAARTLLP-WTVHLRCLWHVMKNARRHCKGALKDKANR 845 GMH +LFIGVD ENKTVVFAQGFFSD+++D++ WALKHYC ICGG PEV+ITDADA +T+A T LP TVHL CLWHVMKN R++C AL KA+R Sbjct: 154 GMHFMLFIGVDSENKTVVFAQGFFSDQSSDTYQWALKHYCTICGGQPEVIITDADAGMTHAVETFLPSTTVHLYCLWHVMKNVRKNCARALGKKASR 250
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI) HSP 1 Score: 102 bits (253), Expect = 1.040e-20 Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 3 Query: 567 LILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGGPEVLITDADAALTNAARTLLP--WTVHLRCLWHVMKNARRHCKGALKD 833 L LF+GVD ENKT VFAQGFFS+E+T++F +A K + ICGG P+V+ITD+DAA+ + R + P T HL C WH+ KN ++ C LK Sbjct: 100 LCLFVGVDSENKTQVFAQGFFSNESTEAFDFANKFFLDICGGHPKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKS 190
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: D8LCW1_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW1_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 2.570e-18 Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 3 Query: 699 EVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKDKANR 845 +VLITDADAA+TNAARTLLP TVHL CLWHVMKN R+H KGALKDKA R Sbjct: 18 KVLITDADAAMTNAARTLLPRTVHLHCLWHVMKNVRKHYKGALKDKATR 66
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.610e-15 Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 3 Query: 558 GMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG---PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKD 833 G ++LF+GVD EN++ + QG E ++F W L Y + GG P+V++TDAD A+T+A ++ T HL CLWHV KN + C GAL D Sbjct: 322 GCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKVILTDADVAMTSAVPSVWKGTQHLFCLWHVNKNLVKKCAGALSD 416
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 4.730e-14 Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 3 Query: 567 LILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG--------------PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKG 821 L LF+GVD ENKT +FAQG S+E SF +A + I GG P+V+ITDADAA+T++ L+P T HL WH+ KN +R C G Sbjct: 873 LCLFVGVDSENKTGIFAQGLLSNEQISSFDFANRFLLEIRGGTQSHHLLPTPPTPHPPQVIITDADAAMTSSVAELMPHTKHLYSSWHISKNLKRKCGG 971
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A8I6X5K8_HORVV (Protein FAR1-RELATED SEQUENCE n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6X5K8_HORVV) HSP 1 Score: 78.2 bits (191), Expect = 6.080e-13 Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 3 Query: 528 FRTTRALPTGGMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG-PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKD 833 F TT G L +GV+ KT+VF DET DSF W + + + G P ++TD DAA+ A R++LP + H C+WH+ +NA +H G + D Sbjct: 223 FDTTYRKLDDGRPFGLIVGVNNHKKTIVFGAALLYDETADSFAWLFRTFLTVMSGKHPHTILTDEDAAMAKAIRSVLPHSHHRLCVWHMNQNACKHLGGVVTD 325
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A8I6X8F8_HORVV (Protein FAR1-RELATED SEQUENCE n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6X8F8_HORVV) HSP 1 Score: 76.3 bits (186), Expect = 1.410e-12 Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 3 Query: 528 FRTTRALPTGGMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG-PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKD 833 F TT G L +GV+ KT+VF DET DSF W K + + G P ++TD DAA+T A R+++ + H C+WH+ +NA +H G + D Sbjct: 24 FDTTYRKLDDGCPFGLIVGVNNHKKTIVFGAALLYDETADSFAWLFKTFLTVMSGKHPHTILTDEDAAMTKAIRSVVLHSHHRLCVWHMNQNACKHLGGVVTD 126
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: T1NVU6_TRIUA (Protein FAR1-RELATED SEQUENCE n=2 Tax=Triticum urartu TaxID=4572 RepID=T1NVU6_TRIUA) HSP 1 Score: 76.6 bits (187), Expect = 3.940e-12 Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 3 Query: 573 LFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG-PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKD 833 L +GV+ KT+VF DET +SF W + + I G P ++TD DAA+ A R++LP + H C+WH+ +NA +H G + D Sbjct: 247 LIVGVNNHKKTIVFGAALLYDETAESFAWLFRTFLTIMSGKHPHTILTDEDAAMAKAIRSVLPHSHHRLCVWHMNQNAIKHLGGVVTD 334
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: UPI001D025284 (protein FAR-RED IMPAIRED RESPONSE 1-like n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D025284) HSP 1 Score: 75.5 bits (184), Expect = 9.970e-12 Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 3 Query: 528 FRTTRALPTGGMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG-PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKD 833 F TT G L +GV+ KT+VF DET +SF W + + I G P ++TD DA + A R++LP + H C+WH+ +NA +H G + D Sbjct: 149 FDTTYRKLDDGRPFGLIVGVNNHKKTIVFGAALLYDETAESFAWLFRTFLTIMSGKHPHTILTDEDATMAKAIRSVLPHSHHRLCVWHMNQNAIKHLGGVVTD 251
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A8I6WDE6_HORVV (Protein FAR1-RELATED SEQUENCE n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WDE6_HORVV) HSP 1 Score: 72.0 bits (175), Expect = 1.020e-11 Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 3 Query: 528 FRTTRALPTGGMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYC-AICGGGPEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRH 812 F +T + GM I F+GV+ T VFA SDET +++W L+ + A C P+ +ITD DA++ A RT+L H C WHV KN +RH Sbjct: 46 FDSTYKMNRYGMPFIPFVGVNNHRCTTVFACAIVSDETEGTYVWLLETFLKANCQVKPKSVITDGDASMIRAIRTVLSDIFHRLCSWHVEKNMQRH 141 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11572.1366.1 >prot_L-elsbetiae_contig11572.1366.1 ID=prot_L-elsbetiae_contig11572.1366.1|Name=mRNA_L-elsbetiae_contig11572.1366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp MHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGGPEVLIback to top mRNA from alignment at L-elsbetiae_contig11572:4151..6124- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig11572.1366.1 ID=mRNA_L-elsbetiae_contig11572.1366.1|Name=mRNA_L-elsbetiae_contig11572.1366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1974bp|location=Sequence derived from alignment at L-elsbetiae_contig11572:4151..6124- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig11572:4151..6124- >mRNA_L-elsbetiae_contig11572.1366.1 ID=mRNA_L-elsbetiae_contig11572.1366.1|Name=mRNA_L-elsbetiae_contig11572.1366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig11572:4151..6124- (Laminarionema elsbetiae ELsaHSoW15)back to top |