mRNA_L-elsbetiae_contig11572.1366.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11572.1366.1
Unique NamemRNA_L-elsbetiae_contig11572.1366.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.760e-36
Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 3
Query:  558 GMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGGPEVLITDADAALTNAARTLLP-WTVHLRCLWHVMKNARRHCKGALKDKANR 845
            GMH +LFIGVD ENKTVVFAQGFFSD+++D++ WALKHYC ICGG PEV+ITDADA +T+A  T LP  TVHL CLWHVMKN R++C  AL  KA+R
Sbjct:  154 GMHFMLFIGVDSENKTVVFAQGFFSDQSSDTYQWALKHYCTICGGQPEVIITDADAGMTHAVETFLPSTTVHLYCLWHVMKNVRKNCARALGKKASR 250          
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.040e-20
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  567 LILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGGPEVLITDADAALTNAARTLLP--WTVHLRCLWHVMKNARRHCKGALKD 833
            L LF+GVD ENKT VFAQGFFS+E+T++F +A K +  ICGG P+V+ITD+DAA+  + R + P   T HL C WH+ KN ++ C   LK 
Sbjct:  100 LCLFVGVDSENKTQVFAQGFFSNESTEAFDFANKFFLDICGGHPKVIITDSDAAMKESIRGVFPPPHTTHLLCSWHICKNIKKKCLSILKS 190          
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: D8LCW1_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 2.570e-18
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 3
Query:  699 EVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKDKANR 845
            +VLITDADAA+TNAARTLLP TVHL CLWHVMKN R+H KGALKDKA R
Sbjct:   18 KVLITDADAAMTNAARTLLPRTVHLHCLWHVMKNVRKHYKGALKDKATR 66          
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.610e-15
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  558 GMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG---PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKD 833
            G  ++LF+GVD EN++ +  QG    E  ++F W L  Y +  GG    P+V++TDAD A+T+A  ++   T HL CLWHV KN  + C GAL D
Sbjct:  322 GCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKVILTDADVAMTSAVPSVWKGTQHLFCLWHVNKNLVKKCAGALSD 416          
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.730e-14
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  567 LILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG--------------PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKG 821
            L LF+GVD ENKT +FAQG  S+E   SF +A +    I GG               P+V+ITDADAA+T++   L+P T HL   WH+ KN +R C G
Sbjct:  873 LCLFVGVDSENKTGIFAQGLLSNEQISSFDFANRFLLEIRGGTQSHHLLPTPPTPHPPQVIITDADAAMTSSVAELMPHTKHLYSSWHISKNLKRKCGG 971          
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A8I6X5K8_HORVV (Protein FAR1-RELATED SEQUENCE n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6X5K8_HORVV)

HSP 1 Score: 78.2 bits (191), Expect = 6.080e-13
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 3
Query:  528 FRTTRALPTGGMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG-PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKD 833
            F TT      G    L +GV+   KT+VF      DET DSF W  + +  +  G  P  ++TD DAA+  A R++LP + H  C+WH+ +NA +H  G + D
Sbjct:  223 FDTTYRKLDDGRPFGLIVGVNNHKKTIVFGAALLYDETADSFAWLFRTFLTVMSGKHPHTILTDEDAAMAKAIRSVLPHSHHRLCVWHMNQNACKHLGGVVTD 325          
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A8I6X8F8_HORVV (Protein FAR1-RELATED SEQUENCE n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6X8F8_HORVV)

HSP 1 Score: 76.3 bits (186), Expect = 1.410e-12
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 3
Query:  528 FRTTRALPTGGMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG-PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKD 833
            F TT      G    L +GV+   KT+VF      DET DSF W  K +  +  G  P  ++TD DAA+T A R+++  + H  C+WH+ +NA +H  G + D
Sbjct:   24 FDTTYRKLDDGCPFGLIVGVNNHKKTIVFGAALLYDETADSFAWLFKTFLTVMSGKHPHTILTDEDAAMTKAIRSVVLHSHHRLCVWHMNQNACKHLGGVVTD 126          
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: T1NVU6_TRIUA (Protein FAR1-RELATED SEQUENCE n=2 Tax=Triticum urartu TaxID=4572 RepID=T1NVU6_TRIUA)

HSP 1 Score: 76.6 bits (187), Expect = 3.940e-12
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  573 LFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG-PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKD 833
            L +GV+   KT+VF      DET +SF W  + +  I  G  P  ++TD DAA+  A R++LP + H  C+WH+ +NA +H  G + D
Sbjct:  247 LIVGVNNHKKTIVFGAALLYDETAESFAWLFRTFLTIMSGKHPHTILTDEDAAMAKAIRSVLPHSHHRLCVWHMNQNAIKHLGGVVTD 334          
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: UPI001D025284 (protein FAR-RED IMPAIRED RESPONSE 1-like n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D025284)

HSP 1 Score: 75.5 bits (184), Expect = 9.970e-12
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  528 FRTTRALPTGGMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGG-PEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKD 833
            F TT      G    L +GV+   KT+VF      DET +SF W  + +  I  G  P  ++TD DA +  A R++LP + H  C+WH+ +NA +H  G + D
Sbjct:  149 FDTTYRKLDDGRPFGLIVGVNNHKKTIVFGAALLYDETAESFAWLFRTFLTIMSGKHPHTILTDEDATMAKAIRSVLPHSHHRLCVWHMNQNAIKHLGGVVTD 251          
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Match: A0A8I6WDE6_HORVV (Protein FAR1-RELATED SEQUENCE n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WDE6_HORVV)

HSP 1 Score: 72.0 bits (175), Expect = 1.020e-11
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 3
Query:  528 FRTTRALPTGGMHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYC-AICGGGPEVLITDADAALTNAARTLLPWTVHLRCLWHVMKNARRH 812
            F +T  +   GM  I F+GV+    T VFA    SDET  +++W L+ +  A C   P+ +ITD DA++  A RT+L    H  C WHV KN +RH
Sbjct:   46 FDSTYKMNRYGMPFIPFVGVNNHRCTTVFACAIVSDETEGTYVWLLETFLKANCQVKPKSVITDGDASMIRAIRTVLSDIFHRLCSWHVEKNMQRH 141          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11572.1366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE1.760e-3670.10SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI1.040e-2052.75Putative far-red impaired response protein n=1 Tax... [more]
D8LCW1_ECTSI2.570e-1883.67MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KG54_9PHAE1.610e-1543.16SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE4.730e-1444.44SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8I6X5K8_HORVV6.080e-1336.89Protein FAR1-RELATED SEQUENCE n=1 Tax=Hordeum vulg... [more]
A0A8I6X8F8_HORVV1.410e-1236.89Protein FAR1-RELATED SEQUENCE n=1 Tax=Hordeum vulg... [more]
T1NVU6_TRIUA3.940e-1238.64Protein FAR1-RELATED SEQUENCE n=2 Tax=Triticum ura... [more]
UPI001D0252849.970e-1235.92protein FAR-RED IMPAIRED RESPONSE 1-like n=1 Tax=T... [more]
A0A8I6WDE6_HORVV1.020e-1140.63Protein FAR1-RELATED SEQUENCE n=1 Tax=Hordeum vulg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11572contigL-elsbetiae_contig11572:4151..6124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue5.2e-20
Seed eggNOG ortholog2880.D7FLF6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size846
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11572.1366.1prot_L-elsbetiae_contig11572.1366.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11572 4151..4647 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815362.2944393-CDS-L-elsbetiae_contig11572:4150..42941622815362.2944393-CDS-L-elsbetiae_contig11572:4150..4294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11572 4151..4294 -
1691682861.1340714-CDS-L-elsbetiae_contig11572:4150..42941691682861.1340714-CDS-L-elsbetiae_contig11572:4150..4294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11572 4151..4294 -
1622815362.3055134-CDS-L-elsbetiae_contig11572:4506..46471622815362.3055134-CDS-L-elsbetiae_contig11572:4506..4647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11572 4507..4647 -
1691682861.1449096-CDS-L-elsbetiae_contig11572:4506..46471691682861.1449096-CDS-L-elsbetiae_contig11572:4506..4647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11572 4507..4647 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815362.3174484-UTR-L-elsbetiae_contig11572:4647..46521622815362.3174484-UTR-L-elsbetiae_contig11572:4647..4652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 4648..4652 -
1691682861.1588588-UTR-L-elsbetiae_contig11572:4647..46521691682861.1588588-UTR-L-elsbetiae_contig11572:4647..4652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 4648..4652 -
1622815362.327183-UTR-L-elsbetiae_contig11572:4945..51451622815362.327183-UTR-L-elsbetiae_contig11572:4945..5145Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 4946..5145 -
1691682861.1754992-UTR-L-elsbetiae_contig11572:4945..51451691682861.1754992-UTR-L-elsbetiae_contig11572:4945..5145Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 4946..5145 -
1622815362.3400412-UTR-L-elsbetiae_contig11572:5384..54531622815362.3400412-UTR-L-elsbetiae_contig11572:5384..5453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 5385..5453 -
1691682861.1860297-UTR-L-elsbetiae_contig11572:5384..54531691682861.1860297-UTR-L-elsbetiae_contig11572:5384..5453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 5385..5453 -
1622815362.3533154-UTR-L-elsbetiae_contig11572:5838..61241622815362.3533154-UTR-L-elsbetiae_contig11572:5838..6124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 5839..6124 -
1691682861.199701-UTR-L-elsbetiae_contig11572:5838..61241691682861.199701-UTR-L-elsbetiae_contig11572:5838..6124Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 5839..6124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11572.1366.1

>prot_L-elsbetiae_contig11572.1366.1 ID=prot_L-elsbetiae_contig11572.1366.1|Name=mRNA_L-elsbetiae_contig11572.1366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MHLILFIGVDPENKTVVFAQGFFSDETTDSFLWALKHYCAICGGGPEVLI
TDADAALTNAARTLLPWTVHLRCLWHVMKNARRHCKGALKDKANR
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mRNA from alignment at L-elsbetiae_contig11572:4151..6124-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11572.1366.1 ID=mRNA_L-elsbetiae_contig11572.1366.1|Name=mRNA_L-elsbetiae_contig11572.1366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1974bp|location=Sequence derived from alignment at L-elsbetiae_contig11572:4151..6124- (Laminarionema elsbetiae ELsaHSoW15)
GGCTACCACGCCGAGGAGCTACCACGCTCCGTCTGTCTATCGGCTACCAC GCCGAGGGCTACCACGCCCGTTCACATACCTCAGACTACCACGTCTGCCC GGGTTGCTACACCCTGAGTTTCCACACTCTACAGCAATTCGCCATCAACG GGTCTTCATACCCGAGGAGTTTTTACACCCGCTCGCACATCGAGCTTTTT CGCAACTTCTTTCTACTACGTTCATCCAACTGGGCGTACTCTGCACGGAT CTACTCAACAACTGCTGTGCTGCCGAAGCTGCGAAGGTACTTCCGTTTTG TCCTCTGAGAAAGGAAAGACACTGCAACTTGCTGTGCTGCCGAAGAGACG TGTGCGCAAGGTCTCTCTCTCCTGCGCTTTCTGAAACTGTTACTGCTGTA GGACGCCGTGTGCATAGCCAGTTTACCAATATAGGTGTGCTTCGAACACG CCCTACCTACCCCGGTGCCTCCAGCGTGCTTGCGAGCACAAAAATAGTAA AAGTCTATCTAGGCTGCCATCCCAGCTACTACTACTGCGGTCTGTTTGTA AAGTGTACACAGCGTACGAGTTGGACATAACGTGCCCGTGGTGCGGAACC ATCCACCGCAACATCCTTGTCTCAAATTCCCGTCTCAAATTCCTGTCTGT CTCACAACCTTGGCTCAAAAGGTGAACATGACCGAATCCTGGACAACATC GGGGCCGATCTTTCTCACGTAGGTGAACGCCTCGGAGGAGGTGCGCGTTC CTTGTGTTAGGTGACGAGGGTCATGCCCAAGTACCGCTGTAGGAGGGCGT CCTTTGGCGTAGACCAGAGCTCACGCTGCACCTCACGCACCATGTTCCTG GCCTAGGGTTCAATGTTAATAGTTATACGGAGCATGTCGACGAAGGACAA GGAAGCCACCGAACACGGTAATACTAACCCTAGACACATCTTTTTTTTTT GCGCGAACCACATGCTGTTACCGACGAAGGTGACCACTGAACGGCAGTGA CGCCAAAACCCTGTTTGGTGTCTGGTTTGAAATACTTGCCTGGCTGTTAT GTCGAGTGGGACACGGACGCCCTGCATCGACTGAAGTACATACGTGTTCT GGTCGACGAGCCAGCAACAGCTCTTCGCGCGGCAGTGGGGTGGGATCGTC TTTCAGGACAACACGTGCCTTACCAACAGGTAGGTGCGAGTTCTCTACAC CTGCGAGTTTTCTTGTCGCTACTTTCGAGGTGTCTGTACCCCTCAGAGGC CGCCGTGATGAAGGCTCCGACTGTAGTGTAGGGAGAGTACGACGTCTGCG TAGCAATATCAGACTAAGGTTAGGCTTGCTCTTCTTTGTTTTCTGGCGCT GGCACGACAACTGGTCACATCCCGAACGGTATTTCTAAAGTGGATATAGT TCAAATCTTGACACACAGCAGCATGGGCTCCGGCGATACCATTCCTGCTT TCGCTTTCCAACGTTCGTGTAGGTGGTATGCACCTTATACTGTTCATCGG AGTCGACCCGGAGAACAAAACGGTCGTTTTCGCCCAGGGGTTCTTCTCTG ACGAAACGACAGACTCCTTCCTGTGGGCTTTGAAGCACTACTGTGCAATT TGCGGGGGGGGGCCGGAGGTGAGCCAGCCTACGTGTACGACCATGAACCG TCTTCGCGTTGAGAGAGGCAGACAGTTTGCCGTCTGTTCCTTTTCCTGCA AATTGCCGCGGCTGCGTTTCGGCACGCAGCACTATACATACCTACATACG CAGAAAGCCACACTGACCCCGATGACATATGTCTGGGGTTGATCGATGGT GTGCTCCCTAAACGTCGTTTCCCTCTCAAGGTGCTCATCACGGATGCGGA TGCTGCCCTGACAAACGCCGCGCGAACGCTTCTGCCTTGGACCGTGCACC TGCGTTGTCTGTGGCACGTGATGAAAAACGCCAGAAGGCATTGCAAGGGT GCTTTGAAAGACAAAGCCAACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11572:4151..6124-

>mRNA_L-elsbetiae_contig11572.1366.1 ID=mRNA_L-elsbetiae_contig11572.1366.1|Name=mRNA_L-elsbetiae_contig11572.1366.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig11572:4151..6124- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCTTATACTGTTCATCGGAGTCGACCCGGAGAACAAAACGGTCGT
TTTCGCCCAGGGGTTCTTCTCTGACGAAACGACAGACTCCTTCCTGTGGG
CTTTGAAGCACTACTGTGCAATTTGCGGGGGGGGGCCGGAGATGCACCTT
ATACTGTTCATCGGAGTCGACCCGGAGAACAAAACGGTCGTTTTCGCCCA
GGGGTTCTTCTCTGACGAAACGACAGACTCCTTCCTGTGGGCTTTGAAGC
ACTACTGTGCAATTTGCGGGGGGGGGCCGGAGGTGCTCATCACGGATGCG
GATGCTGCCCTGACAAACGCCGCGCGAACGCTTCTGCCTTGGACCGTGCA
CCTGCGTTGTCTGTGGCACGTGATGAAAAACGCCAGAAGGCATTGCAAGG
GTGCTTTGAAAGACAAAGCCAACCGCGTGCTCATCACGGATGCGGATGCT
GCCCTGACAAACGCCGCGCGAACGCTTCTGCCTTGGACCGTGCACCTGCG
TTGTCTGTGGCACGTGATGAAAAACGCCAGAAGGCATTGCAAGGGTGCTT
TGAAAGACAAAGCCAACCGC
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