mRNA_L-elsbetiae_contig11572.1365.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11572.1365.1
Unique NamemRNA_L-elsbetiae_contig11572.1365.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11572.1365.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.880e-27
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:  232 RNHKFWSRCYFPTTMTLNMTATQRVEGVFSVLKKGRFVNRRSSLVWMKSELEKRIAEFTLASTMRRLKSTSFGRNHIDKNVLKT 483
            R+H+ WSRC+FPTTMTLNMTATQRVEG+FSVLKKGR VNRR SLV +K+ELEKRIA FTLAS +   K+ S GR HID +VLKT
Sbjct:  293 RHHRHWSRCFFPTTMTLNMTATQRVEGMFSVLKKGRIVNRRCSLVRVKAELEKRIAGFTLASNLLSTKAPSLGRQHIDDHVLKT 376
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BLAST of mRNA_L-elsbetiae_contig11572.1365.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.970e-24
Identity = 76/206 (36.89%), Postives = 107/206 (51.94%), Query Frame = 3 
Query:  486 ECILTKLLEVGTSTFIKDEIMAEMRASVAYDTRALLAGDAD*--CREYLGGLAERVEVREDLCADVPPEAFDESAKGAMIRTSPCMERHP*RYFQSLFGMLGSMPSYKCSTSTLALVSVRLYTERFPI---------LLSLGREDFNCARA*SL*GAGCIAVMYVLAALVTRLGRASEFVGTSIHPRWRSSLGEWSMRNTELGDFE 1070
            E +  +L +VG ST+  +E++AEMRAS AYDT  L    AD   C + L GLAER    E  CADVP EAF+ S    +                +++G   S+PS+      + + +V     ++P          ++ +G + F       L   G +   +V AALVTRL RAS+F+G SIHPRWR S+ EWS+RN  LG F+
Sbjct:  724 EHVFRQLTDVGASTYAVNEMVAEMRASAAYDTAVLTDKQADDAACHDCLDGLAERGGRTEGYCADVPAEAFEGSHDPDI----------------TMYGTT-SLPSFAELVRNVGIEAVVQVQYKYPRTARRGKVSHIVVVGPKGFQLCTCLKLMRCG-LPCSHVFAALVTRLDRASDFIGASIHPRWRKSVVEWSLRNVALGTFD 911
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BLAST of mRNA_L-elsbetiae_contig11572.1365.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 7.090e-15
Identity = 43/114 (37.72%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:  229 YRNHKFWSRCYFPTTMTLNMTATQRVEGVFSVLKKGRFVNRRSSLVWMKSELEKRIAEFTLASTMRRLKSTSFGRNHIDKNVLKTPNVS*PNSLKLEPARSSKTRLWPRCVRAS 570
            Y   K W+RC+ PT MTL+MT++QRVEG FSVLKKGR + R S+   ++++ E+   E  LASTM+  K TS G+ +++ +V K+         ++  ++ +K  +W   + +S
Sbjct:  237 YERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQTSLGKGYVENDVKKSMEKVMTAYAEVGASKYAKEEIWAEMLASS 350
[Close]
BLAST of mRNA_L-elsbetiae_contig11572.1365.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.820e-6
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:  229 YRNHKFWSRCYFPTTMTLNMTATQRVEGVFSVLKKGRFVNRRSSLVWMKSELEKRIAEFTLASTM 423
            +   K W+RC  PTTMTL MTA+QRVEG FSV+K G  V + S+   ++  +E    +  LAS M
Sbjct: 1018 FDQRKHWARCCHPTTMTLGMTASQRVEGSFSVIKNGGAVRKNSTFGAVRKRVETVAEDLALASRM 1082
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11572.1365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE2.880e-2773.81SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE1.970e-2436.89SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI7.090e-1537.72Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K454_9PHAE9.820e-646.15SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11572contigL-elsbetiae_contig11572:2352..3920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue6.4e-09
Seed eggNOG ortholog2880.D7FLF6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1086
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11572.1365.1prot_L-elsbetiae_contig11572.1365.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11572 2369..2707 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815362.1994078-UTR-L-elsbetiae_contig11572:2351..23681622815362.1994078-UTR-L-elsbetiae_contig11572:2351..2368Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 2352..2368 -
1691682861.0769176-UTR-L-elsbetiae_contig11572:2351..23681691682861.0769176-UTR-L-elsbetiae_contig11572:2351..2368Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 2352..2368 -
1622815362.232422-UTR-L-elsbetiae_contig11572:2707..28981622815362.232422-UTR-L-elsbetiae_contig11572:2707..2898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 2708..2898 -
1691682861.0987082-UTR-L-elsbetiae_contig11572:2707..28981691682861.0987082-UTR-L-elsbetiae_contig11572:2707..2898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 2708..2898 -
1622815362.2461061-UTR-L-elsbetiae_contig11572:3219..33361622815362.2461061-UTR-L-elsbetiae_contig11572:3219..3336Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 3220..3336 -
1691682861.1117575-UTR-L-elsbetiae_contig11572:3219..33361691682861.1117575-UTR-L-elsbetiae_contig11572:3219..3336Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 3220..3336 -
1622815362.2600672-UTR-L-elsbetiae_contig11572:3498..39201622815362.2600672-UTR-L-elsbetiae_contig11572:3498..3920Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 3499..3920 -
1691682861.123825-UTR-L-elsbetiae_contig11572:3498..39201691682861.123825-UTR-L-elsbetiae_contig11572:3498..3920Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11572 3499..3920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815362.219153-CDS-L-elsbetiae_contig11572:2368..27071622815362.219153-CDS-L-elsbetiae_contig11572:2368..2707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11572 2369..2707 -
1691682861.0896566-CDS-L-elsbetiae_contig11572:2368..27071691682861.0896566-CDS-L-elsbetiae_contig11572:2368..2707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11572 2369..2707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11572.1365.1

>prot_L-elsbetiae_contig11572.1365.1 ID=prot_L-elsbetiae_contig11572.1365.1|Name=mRNA_L-elsbetiae_contig11572.1365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MYGTASLAVFSELVRNVGIDAIVQVQYKYPSTRQRETLHRKVSYIVVVGS
GGFQLCTCLKLMRCGLHRSHVCVGRTSYAPWPGKRVRRDVYPPSMAKFSR
GVEYAEYRTGRL*
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mRNA from alignment at L-elsbetiae_contig11572:2352..3920-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11572.1365.1 ID=mRNA_L-elsbetiae_contig11572.1365.1|Name=mRNA_L-elsbetiae_contig11572.1365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1569bp|location=Sequence derived from alignment at L-elsbetiae_contig11572:2352..3920- (Laminarionema elsbetiae ELsaHSoW15)
GCCACGTCAGCGGCTCCACATGCGAAGACTACGTCAAAGACGAACTCTTC
AAGTCAGTTATGTGCACGTCCTAGCAACTGCAGGTGGGCCGGGGGTGCGG
GCCTCCGAAGGCACCGTTCGAGCGACCGGTAGGTTGGCTTGCGTTAGTCT
TCTCCGCCGGGCCCGGCGATAGCTTGTTGTAACAGGAGGTGCCACTGTTT
TAAACCTTTTTTTCGTCCGTCCTCTTCTTACAGGAACCACAAGTTCTGGT
CACGCTGCTACTTCCCGACGACCATGACGCTGAACATGACCGCGACACAG
AGGGTGGAGGGTGTTTTCAGTGTCTTGAAGAAAGGGCGGTTCGTGAACCG
CCGTTCTTCTCTGGTTTGGATGAAGTCGGAGCTGGAGAAACGGATCGCAG
AGTTTACGTTGGCGTCAACTATGTGAGTTTCTAACATAACCGCCATTCCG
TCCCGCTTTAAACAACCCTTTGCCCGGCGCGGAGACAATGTACACTTGGT
ATGTTTAGACTTACCCCCCGTTCCCCGCTTTGAATCGCCTGCCGACGTTT
CTTTGCCAATCATTTCGTTGCAACGGCAATGCAGGCGCAGGCTCAAGTCT
ACCAGCTTTGGGAGAAACCATATTGACAAGAACGTGCTCAAGACCCCGAA
TGTATCTTGACCAAACTCCTTGAAGTTGGAACCAGCACGTTCATCAAAGA
CGTGAGTTCAGGCAGCAGTTGCAATGTATGTTGTCTTGGTTCGACTATCA
CAGGGCTTTCTTTTCATGCATGTCTTTCCTAACCCGCGGTAGCACCAAAT
CCCCCGCGGAAATTCCCGCCACACAACGCTGCATTCTTGTTTCGGGGGGC
GGGGGGGGGAGGAGGGATTTTGTTTTTTCCGGGTATGTTAGTATGTCAGC
GGGGTTGGTGCTTTCCTGTCGTTCTTTAGTTGGGTGTTTGTTTCGCTTTT
ACGTTTCGTTTGACATTCCGCCACGCGTCGCACTCCTTCCTCTTGTCCCA
TTCGGCCACCATCGCTTGCCAGGAGATTATGGCCGAGATGCGTGCGAGCG
TCGCGTACGACACGAGGGCCCTTCTGGCTGGCGATGCCGACTAGTGCCGC
GAATATCTGGGGGGGTTGGCAGAGCGAGTGGAGGTTCGGGAAGACCTTTG
TGCTGACGTGCCACCGGAGGCATTCGACGAGAGCGCCAAGGGAGCGATGA
TCCGGACATCACCATGTATGGAACGGCATCCTTAGCGGTATTTTCAGAGC
TTGTTCGGAATGTTGGGATCGATGCCATCGTACAAGTGCAGTACAAGTAC
CCTAGCACTCGTCAGCGTGAGACTCTACACCGAAAGGTTTCCTATATTGT
TGTCGTTGGGTCGGGAGGATTTCAATTGTGCACGTGCTTGAAGCTTATGA
GGTGCGGGTTGCATCGCAGTCATGTATGTGTTGGCCGCACTAGTTACGCG
CCTTGGCCGGGCAAGCGAGTTCGTCGGGACGTCTATCCACCCTCGATGGC
GAAGTTCTCTCGGGGAGTGGAGTATGCGGAATACAGAACTGGGCGACTTT
GAACGTGTGAAGTTCACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11572:2352..3920-

>mRNA_L-elsbetiae_contig11572.1365.1 ID=mRNA_L-elsbetiae_contig11572.1365.1|Name=mRNA_L-elsbetiae_contig11572.1365.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig11572:2352..3920- (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGGAACGGCATCCTTAGCGGTATTTTCAGAGCTTGTTCGGAATGT
TGGGATCGATGCCATCGTACAAGTGCAGTACAAGTACCCTAGCACTCGTC
AGCGTGAGACTCTACACCGAAAGGTTTCCTATATTGTTGTCGTTGGGTCG
GGAGGATTTCAATTGTGCACGTGCTTGAAGCTTATGAGGTGCGGGTTGCA
TCGCAGTCATGTATGTGTTGGCCGCACTAGTTACGCGCCTTGGCCGGGCA
AGCGAGTTCGTCGGGACGTCTATCCACCCTCGATGGCGAAGTTCTCTCGG
GGAGTGGAGTATGCGGAATACAGAACTGGGCGACTTTGAATGTATGGAAC
GGCATCCTTAGCGGTATTTTCAGAGCTTGTTCGGAATGTTGGGATCGATG
CCATCGTACAAGTGCAGTACAAGTACCCTAGCACTCGTCAGCGTGAGACT
CTACACCGAAAGGTTTCCTATATTGTTGTCGTTGGGTCGGGAGGATTTCA
ATTGTGCACGTGCTTGAAGCTTATGAGGTGCGGGTTGCATCGCAGTCATG
TATGTGTTGGCCGCACTAGTTACGCGCCTTGGCCGGGCAAGCGAGTTCGT
CGGGACGTCTATCCACCCTCGATGGCGAAGTTCTCTCGGGGAGTGGAGTA
TGCGGAATACAGAACTGGGCGACTTTGA
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