mRNA_L-elsbetiae_contig11570.1364.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11570.1364.1
Unique NamemRNA_L-elsbetiae_contig11570.1364.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11570.1364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11570contigL-elsbetiae_contig11570:3721..4206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size295
Cds size273
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815362.137028-UTR-L-elsbetiae_contig11570:3720..37421622815362.137028-UTR-L-elsbetiae_contig11570:3720..3742Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11570 3721..3742 +
1691682861.0365288-UTR-L-elsbetiae_contig11570:3720..37421691682861.0365288-UTR-L-elsbetiae_contig11570:3720..3742Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11570 3721..3742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815362.1483345-CDS-L-elsbetiae_contig11570:3742..38171622815362.1483345-CDS-L-elsbetiae_contig11570:3742..3817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11570 3743..3817 +
1691682861.0471988-CDS-L-elsbetiae_contig11570:3742..38171691682861.0471988-CDS-L-elsbetiae_contig11570:3742..3817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11570 3743..3817 +
1622815362.1588686-CDS-L-elsbetiae_contig11570:4008..42061622815362.1588686-CDS-L-elsbetiae_contig11570:4008..4206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11570 4009..4206 +
1691682861.062935-CDS-L-elsbetiae_contig11570:4008..42061691682861.062935-CDS-L-elsbetiae_contig11570:4008..4206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11570 4009..4206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11570.1364.1prot_L-elsbetiae_contig11570.1364.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11570 3743..4206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11570.1364.1

>prot_L-elsbetiae_contig11570.1364.1 ID=prot_L-elsbetiae_contig11570.1364.1|Name=mRNA_L-elsbetiae_contig11570.1364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MVAIGLAKRLTLIGQYTPAITSTMQILTAHAGIAVFALATKFDRSPLASK
DTSCADRSCDEKPYASDRWRSARSALTRAAQAVQGVLLTGR
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mRNA from alignment at L-elsbetiae_contig11570:3721..4206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11570.1364.1 ID=mRNA_L-elsbetiae_contig11570.1364.1|Name=mRNA_L-elsbetiae_contig11570.1364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig11570:3721..4206+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGGGTGGCGCTGGTTGCGCAATGGTCGCCATCGGTTTGGCCAAACGGC
TGACACTGATTGGTCAGTACACCCCCGCCATTACTTCGACAATGCAGGTG
CAGCACTGTTGTGGCGCGCCAACAAGTTAGGTTCACACGATGCCGAAGGT
ATCCCCTCGCCCCGGCGTGGTAGGCTACGGTGGCTGCATGGAAACCATTG
CCAAATTGTACGTACATTCCTTTGAAAATATTTAGCCCTCCGCCGATATT
CATAAAACTCGATCATCCGTTCCGTCTGCATTGACCAGATACTGACCGCG
CACGCGGGTATAGCTGTATTCGCACTGGCCACAAAATTCGACAGGTCGCC
CTTGGCTTCAAAGGACACGTCCTGTGCCGACAGGTCCTGTGACGAAAAAC
CCTACGCCAGTGACCGATGGCGTTCGGCAAGATCAGCTTTGACACGAGCA
GCACAAGCTGTGCAAGGGGTGTTGTTGACAGGGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11570:3721..4206+

>mRNA_L-elsbetiae_contig11570.1364.1 ID=mRNA_L-elsbetiae_contig11570.1364.1|Name=mRNA_L-elsbetiae_contig11570.1364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig11570:3721..4206+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGCCATCGGTTTGGCCAAACGGCTGACACTGATTGGTCAGTACAC
CCCCGCCATTACTTCGACAATGCAGATGGTCGCCATCGGTTTGGCCAAAC
GGCTGACACTGATTGGTCAGTACACCCCCGCCATTACTTCGACAATGCAG
ATACTGACCGCGCACGCGGGTATAGCTGTATTCGCACTGGCCACAAAATT
CGACAGGTCGCCCTTGGCTTCAAAGGACACGTCCTGTGCCGACAGGTCCT
GTGACGAAAAACCCTACGCCAGTGACCGATGGCGTTCGGCAAGATCAGCT
TTGACACGAGCAGCACAAGCTGTGCAAGGGGTGTTGTTGACAGGGCGCAT
ACTGACCGCGCACGCGGGTATAGCTGTATTCGCACTGGCCACAAAATTCG
ACAGGTCGCCCTTGGCTTCAAAGGACACGTCCTGTGCCGACAGGTCCTGT
GACGAAAAACCCTACGCCAGTGACCGATGGCGTTCGGCAAGATCAGCTTT
GACACGAGCAGCACAAGCTGTGCAAGGGGTGTTGTTGACAGGGCGC
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