mRNA_L-elsbetiae_contig11556.1356.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11556.1356.1
Unique NamemRNA_L-elsbetiae_contig11556.1356.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11556.1356.1 vs. uniprot
Match: D7FT02_ECTSI (Serine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT02_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.940e-25
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 2
Query:   80 MLNSTQCATTSTMSCILENYQTPRGVAVPEVLVPYMGGLTFLDYAKELP*GRREAKGAAKG 262
            MLNST CATT TMSCILENYQTP GV VPEVLVP+MGG+TFLDY KELP G+REAKGA KG
Sbjct:  388 MLNSTLCATTRTMSCILENYQTPTGVTVPEVLVPFMGGITFLDYVKELPKGKREAKGATKG 448          
BLAST of mRNA_L-elsbetiae_contig11556.1356.1 vs. uniprot
Match: A0A836CAY7_9STRA (Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.580e-17
Identity = 41/64 (64.06%), Postives = 46/64 (71.88%), Query Frame = 2
Query:   80 MLNSTQCATTSTMSCILENYQTPRGVAVPEVLVPYMGGLTFLDYAKELP*GRREAKGAAKGLTP 271
            MLN+T CATT T+SCILEN+QTP GV VP  LVPYMGG  F+ + KELP    EAKG  KG  P
Sbjct:  392 MLNATLCATTRTLSCILENFQTPDGVRVPPALVPYMGGKDFIPFVKELPAALVEAKGVTKGGMP 455          
BLAST of mRNA_L-elsbetiae_contig11556.1356.1 vs. uniprot
Match: L8GI72_ACACA (Serine--tRNA ligase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GI72_ACACA)

HSP 1 Score: 81.3 bits (199), Expect = 1.660e-15
Identity = 44/77 (57.14%), Postives = 51/77 (66.23%), Query Frame = 2
Query:   35 VRAEGRRADGEGVRA-MLNSTQCATTSTMSCILENYQTPRGVAVPEVLVPYMGGLTFLDYAKELP*GRREA-KGAAK 259
            VR   R+  GE     MLN+T CATT T+ CILENYQTP GVAVP+VL PY+GGL F+ + KE P    EA KG  K
Sbjct:  375 VRCGSRKQGGEKKYVHMLNATLCATTRTICCILENYQTPEGVAVPKVLQPYLGGLEFIPFVKEAPKKHEEAVKGKEK 451          
BLAST of mRNA_L-elsbetiae_contig11556.1356.1 vs. uniprot
Match: A0A485L5N7_9STRA (Serine--tRNA ligase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5N7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.290e-15
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 2
Query:   80 MLNSTQCATTSTMSCILENYQTPRGVAVPEVLVPYMGGLTFLDYAKELP*GRREAK 247
            +LN+T CATT T+SCILEN+QTP GV VPEVLVP+MGG+TFL + +E P   +E K
Sbjct:  393 LLNATLCATTRTISCILENFQTPEGVRVPEVLVPFMGGVTFLPFVQEAPVNLQEKK 448          
BLAST of mRNA_L-elsbetiae_contig11556.1356.1 vs. uniprot
Match: A0A196SFB0_BLAHN (Seryl-tRNA synthetase (Fragment) n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SFB0_BLAHN)

HSP 1 Score: 73.2 bits (178), Expect = 5.190e-14
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 2
Query:   80 MLNSTQCATTSTMSCILENYQTPRGVAVPEVLVPYMGGLTFLDYAKELP 226
            MLNST CA T T+ CILENYQTP G+ +PE L+PYM G+TFL + + +P
Sbjct:   79 MLNSTLCALTRTLCCILENYQTPEGIQIPEKLLPYMDGITFLPFKRPIP 127          
BLAST of mRNA_L-elsbetiae_contig11556.1356.1 vs. uniprot
Match: A0A024TCC2_9STRA (Serine--tRNA ligase n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TCC2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.110e-14
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 2
Query:   80 MLNSTQCATTSTMSCILENYQTPRGVAVPEVLVPYMGGLTFLDYAKE 220
            +LN+T CATT T+SCILEN+QTP GV VPEVLVP+MGG+TFL +  E
Sbjct:  393 LLNATLCATTRTISCILENFQTPEGVRVPEVLVPFMGGVTFLPFVNE 439          
BLAST of mRNA_L-elsbetiae_contig11556.1356.1 vs. uniprot
Match: A0A1Y2FS58_PROLT (Serine--tRNA ligase n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FS58_PROLT)

HSP 1 Score: 75.1 bits (183), Expect = 2.300e-13
Identity = 35/48 (72.92%), Postives = 36/48 (75.00%), Query Frame = 2
Query:   83 LNSTQCATTSTMSCILENYQTPRGVAVPEVLVPYMGGLTFLDYAKELP 226
            LNST CAT   + CILENYQTP GV VPEVL PYMGG TFL Y K LP
Sbjct:  356 LNSTLCATERALCCILENYQTPDGVIVPEVLRPYMGGKTFLPYTKPLP 403          
BLAST of mRNA_L-elsbetiae_contig11556.1356.1 vs. uniprot
Match: A0A6G0XJV5_9STRA (Serine--tRNA ligase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJV5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.480e-13
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 2
Query:   80 MLNSTQCATTSTMSCILENYQTPRGVAVPEVLVPYMGGLTFLDYAKE 220
            +LN+T CATT T+SCILEN+QTP GV VP+VLVP+MGG+TFL +  E
Sbjct:  393 LLNATLCATTRTISCILENFQTPEGVRVPDVLVPFMGGVTFLPFVHE 439          
BLAST of mRNA_L-elsbetiae_contig11556.1356.1 vs. uniprot
Match: A0A7S3Y3E5_HETAK (Serine--tRNA ligase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3E5_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 2.570e-13
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 2
Query:   80 MLNSTQCATTSTMSCILENYQTPRGVAVPEVLVPYMGGLTFLDYAKELP*GRREAKGAAK 259
            MLN+T CATT T+ CILENYQT  GV VPEVLVPYMGG TFL +  E     +  +GA K
Sbjct:  392 MLNATLCATTRTICCILENYQTETGVRVPEVLVPYMGGTTFLPFIWEDKLASKGERGAQK 451          
BLAST of mRNA_L-elsbetiae_contig11556.1356.1 vs. uniprot
Match: A0A5A8E5A5_CAFRO (Serine--tRNA ligase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E5A5_CAFRO)

HSP 1 Score: 74.7 bits (182), Expect = 3.640e-13
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 2
Query:   80 MLNSTQCATTSTMSCILENYQTPRGVAVPEVLVPYMGGLTFLDYAKELP*GRREAKGAAKG 262
            MLNST CATT T+  ILENYQTP GV VPE LVPYMGG TFL + +  P     A+ +AKG
Sbjct:  412 MLNSTLCATTRTICAILENYQTPDGVKVPEALVPYMGGTTFLPFVRPKP-KNINAEKSAKG 471          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11556.1356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT02_ECTSI1.940e-2583.61Serine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A836CAY7_9STRA4.580e-1764.06Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
L8GI72_ACACA1.660e-1557.14Serine--tRNA ligase n=1 Tax=Acanthamoeba castellan... [more]
A0A485L5N7_9STRA2.290e-1564.29Serine--tRNA ligase n=1 Tax=Aphanomyces stellatus ... [more]
A0A196SFB0_BLAHN5.190e-1461.22Seryl-tRNA synthetase (Fragment) n=1 Tax=Blastocys... [more]
A0A024TCC2_9STRA7.110e-1470.21Serine--tRNA ligase n=3 Tax=Aphanomyces TaxID=1008... [more]
A0A1Y2FS58_PROLT2.300e-1372.92Serine--tRNA ligase n=1 Tax=Protomyces lactucae-de... [more]
A0A6G0XJV5_9STRA2.480e-1368.09Serine--tRNA ligase n=1 Tax=Aphanomyces euteiches ... [more]
A0A7S3Y3E5_HETAK2.570e-1361.67Serine--tRNA ligase (Fragment) n=1 Tax=Heterosigma... [more]
A0A5A8E5A5_CAFRO3.640e-1362.30Serine--tRNA ligase n=1 Tax=Cafeteria roenbergensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11556contigL-elsbetiae_contig11556:397..1083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11556.1356.1prot_L-elsbetiae_contig11556.1356.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11556 397..951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.0291524-CDS-L-elsbetiae_contig11556:396..5651622815361.0291524-CDS-L-elsbetiae_contig11556:396..565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11556 397..565 +
1691682860.5598512-CDS-L-elsbetiae_contig11556:396..5651691682860.5598512-CDS-L-elsbetiae_contig11556:396..565Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11556 397..565 +
1622815361.0407047-CDS-L-elsbetiae_contig11556:880..9511622815361.0407047-CDS-L-elsbetiae_contig11556:880..951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11556 881..951 +
1691682860.5707095-CDS-L-elsbetiae_contig11556:880..9511691682860.5707095-CDS-L-elsbetiae_contig11556:880..951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11556 881..951 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815361.0532863-UTR-L-elsbetiae_contig11556:951..10831622815361.0532863-UTR-L-elsbetiae_contig11556:951..1083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11556 952..1083 +
1691682860.5809004-UTR-L-elsbetiae_contig11556:951..10831691682860.5809004-UTR-L-elsbetiae_contig11556:951..1083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11556 952..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11556.1356.1

>prot_L-elsbetiae_contig11556.1356.1 ID=prot_L-elsbetiae_contig11556.1356.1|Name=mRNA_L-elsbetiae_contig11556.1356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MYIHRAAGWRCSPGRRKTGRWRRSTRNAELDAVRDDQHNVVHPRELPDPE
GSRGARGAGALHGRSYLSRLRQGAALGQA*
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mRNA from alignment at L-elsbetiae_contig11556:397..1083+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11556.1356.1 ID=mRNA_L-elsbetiae_contig11556.1356.1|Name=mRNA_L-elsbetiae_contig11556.1356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=687bp|location=Sequence derived from alignment at L-elsbetiae_contig11556:397..1083+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATATACACAGAGCCGCGGGGTGGAGGTGCAGTCCGGGCAGAAGGAA GACGGGCAGATGGAGAAGGAGTACGCGCAATGCTGAACTCGACGCAGTGC GCGACGACCAGCACAATGTCGTGCATCCTCGAGAACTACCAGACCCCGAG GGGAGTCGCGGTGCCCGAGGTGAGCGGAGCTGAGCTGGGCTTGTTGTGTG TGTTCGAGTATCGTTCAGTCAGCGAGCCTTCGTCGATGCACCACGCACCA CGTTGTTGATTTTGACAGTCCCACTGGTGTTGGTAGCATTGTTGTCATTG TGCTGTTTTTGGTTGGCGAAAGCTTCGTGACGCTGTTCACAGTTCCGCCG TGACCGTGTTGACAACCCCGTTGTGCACCGAGTGTTGTTGCTGCTGTTGC TGGCACGCCCCCACACGTTCCTCCCTAGCTTCGCCACATTAATTTTCCCG GAACCTTTTCATCCCCCCCACGTCAACACTCCAGGTGCTGGTGCCCTACA TGGGCGGTCTTACCTTTCTAGACTACGCCAAGGAGCTGCCCTAGGGCAGG CGTGAGGCTAAGGGCGCTGCCAAGGGGTTAACCCCAACTCGCAAAATAAG CCTGCTACTGCCGCCGCTGCTGCTGCCACTACCACTAATGGTGCAGCGTT TGTGAAATCTACTGGGCGTGAGTTGCCCGGCGTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11556:397..1083+

>mRNA_L-elsbetiae_contig11556.1356.1 ID=mRNA_L-elsbetiae_contig11556.1356.1|Name=mRNA_L-elsbetiae_contig11556.1356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig11556:397..1083+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATATACACAGAGCCGCGGGGTGGAGGTGCAGTCCGGGCAGAAGGAA
GACGGGCAGATGGAGAAGGAGTACGCGCAATGCTGAACTCGACGCAGTGC
GCGACGACCAGCACAATGTCGTGCATCCTCGAGAACTACCAGACCCCGAG
GGGAGTCGCGGTGCCCGAGATGTATATACACAGAGCCGCGGGGTGGAGGT
GCAGTCCGGGCAGAAGGAAGACGGGCAGATGGAGAAGGAGTACGCGCAAT
GCTGAACTCGACGCAGTGCGCGACGACCAGCACAATGTCGTGCATCCTCG
AGAACTACCAGACCCCGAGGGGAGTCGCGGTGCCCGAGGTGCTGGTGCCC
TACATGGGCGGTCTTACCTTTCTAGACTACGCCAAGGAGCTGCCCTAGGG
CAGGCGTGAGTGCTGGTGCCCTACATGGGCGGTCTTACCTTTCTAGACTA
CGCCAAGGAGCTGCCCTAGGGCAGGCGTGA
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