mRNA_L-elsbetiae_contig1155.1355.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1155.1355.1
Unique NamemRNA_L-elsbetiae_contig1155.1355.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1155.1355.1 vs. uniprot
Match: A0A6H5L011_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L011_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 4.920e-105
Identity = 249/474 (52.53%), Postives = 280/474 (59.07%), Query Frame = 1
Query:  877 EAEARCLSDAARXXXXXERERRSLVEHRRRGPSSVSGRDDPD--------SQPPTPVRDGRDEGGAAVSFTRSS-----------------RDSTREEAWAAARMLAEEKARAQAIRDAALRAGEKYQDSSGSAAGAGTGXXXXXXXXXXXXXXXXXXXXATISTAALSGESGAAGAERISSNSRPGSVTLDAVAESGGGAADVTRHAVDA-AELDASSGGWRSFFSGRRKEGG---SVTSSVSGSQVDPALSSRPPEAGGAATAPTRPPGAHEFQRVKTSRRPRGANGGXXXXXXXXXXXP---ECAACLGLWDAGGSALNRWYRCRRCGAAVHGACRQLLEAGGACVEPGEGXXXXXXXXXXXXGKEGMLARPAGWRDPVNRAGVVQVGVLQAFSLSLKPGESVYVALRLLPWKERVKTGSAKWGDLGASWPSHPSARHDLLHLYNSDATPVPTLRVEVWRSAMRVLDDLLG 2202
            E   R L D A      E+ +       RRG  SV+ R+ P         +QP TP RD    G  A S T                        REEAWAAAR LAE+KA++QA+RDAALRA  + +  +  A    +GXXXXXXXX        XXXX                    +++S P +VTLD      G   D TR  V   A L+ SSGGWR FF+GRR+E G   S TSSVSGSQV   +++ P  AG AA    R  G H+F RVK++R+ RG+  G           P   ECAACLG WDAGGSA+NRWYRCRRC   VHGACRQ  +AG AC E                  +G LARPAGWRDPVNRAGVVQVGVLQAF LSLKPGESVYVALRLLPWKERVKTGSAKWGDLGASWPS  SARHDLLHLYNSDATPVPTLRVEVWRSAMRVLDDLLG
Sbjct:  316 EVRGRPLPDVADAKVEDEQNQVEGEARERRGGGSVASRESPSGAAKVRLATQPETPFRDADTAGLPAPSPTMQQDAXXXXXXXXXXXXXXXXSRAREEAWAAARTLAEQKAQSQAMRDAALRASAQAERGAAGANLTDSGXXXXXXXXGFSEEPVAXXXXXXXXXXXX---------PEPNNSSNPENVTLDTPVAESGQRVDATRPPVAVPAALEVSSGGWRGFFAGRRQEAGGEASATSSVSGSQVSTVVATEPANAGAAAAGNNRQAGPHDFVRVKSTRKLRGSTSGPGGNITGADPDPPPMECAACLGQWDAGGSAMNRWYRCRRCECTVHGACRQFFQAGEACAEQAG---------------DGGLARPAGWRDPVNRAGVVQVGVLQAFDLSLKPGESVYVALRLLPWKERVKTGSAKWGDLGASWPSQASARHDLLHLYNSDATPVPTLRVEVWRSAMRVLDDLLG 765          
BLAST of mRNA_L-elsbetiae_contig1155.1355.1 vs. uniprot
Match: D7G411_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G411_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 4.830e-100
Identity = 250/470 (53.19%), Postives = 273/470 (58.09%), Query Frame = 1
Query:  889 RCLSDAARXXXXXERERRSLVEHRRRGPSSVSGRDDPD--------SQPPTPVRDGRDEGGAAVSFTRSS-----------------RDSTREEAWAAARMLAEEKARAQAIRDAALRAGEKYQDSSGSAAGAGTGXXXXXXXXXXXXXXXXXXXXATISTAALSGESGAAGAERISSNSRPGSVTLDAVAESGGGAADVTRHAVDA-AELDASSGGWRSFFSGRRKEGGSVTSS---VSGSQVDPALSSRPPEAGGAATAPTRPPGAHEFQRVKTSRRPRGANGGXXXXXXXXXXXP---ECAACLGLWDAGGSALNRWYRCRRCGAAVHGACRQLLEAGGACVEPGEGXXXXXXXXXXXXGKEGMLARPAGWRDPVNRAGVVQVGVLQAFSLSLKPGESVYVALRLLPWKERVKTGSAKWGDLGASWPSHPSARHDLLHLYNSDATPVPTLRVEVWRSAMRVLDDLLG 2202
            R L D A      ER +   +   RRG  SV+ R+ P         ++P TP RD    G  A S T                        REEAWAAAR LAE+KAR+QA+RDAALRA       S  A   GTG     XXXXXXXXXXXXXXX                    SSN   G+VTLD      G  AD  R  V   A L+ SSGGWR FF+GRR+EG         VSGSQV   + + P  AG       R  G H+F RVK +RR RG+  G           P   ECAACLG WD GGSA+NRWYRCRRCG  VHGACRQ  +AG AC E                  EG LARPAGWRDPVNRAGVVQVGVLQAF LSLKPGESVYVALRLLPW+ERVKTGSAKWG++GASWPS  SARHDLLHLYNSDATPVPTLRVEVWRSAMRVLDDLLG
Sbjct:  304 RPLPDVADAKAREERNQEEGIARERRGGGSVASRESPSGAAKVQLATEPETPFRDADTAGLPAPSPTMQQDXXXXXXXXXXXXXXXXXSRAREEAWAAARTLAEQKARSQAMRDAALRA-------SAQAERGGTGANLTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNNSSNL--GNVTLDTPVAESGQRADAPRPRVAVPAALEVSSGGWRGFFAGRRQEGXXXXXXXXXVSGSQVSTVIVTEPANAGXXXXXNNRRAGPHDFVRVKLTRRRRGSTSGPGGNVTGANPDPPPMECAACLGQWDTGGSAMNRWYRCRRCGGTVHGACRQFFQAGEACAEQRG---------------EGGLARPAGWRDPVNRAGVVQVGVLQAFDLSLKPGESVYVALRLLPWEERVKTGSAKWGEIGASWPSQVSARHDLLHLYNSDATPVPTLRVEVWRSAMRVLDDLLG 749          
BLAST of mRNA_L-elsbetiae_contig1155.1355.1 vs. uniprot
Match: A0A835ZCX8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX8_9STRA)

HSP 1 Score: 157 bits (397), Expect = 6.510e-36
Identity = 83/191 (43.46%), Postives = 105/191 (54.97%), Query Frame = 1
Query: 1693 PECAACLGLWDAGGSALNRWYRCRRCGAAVHGACRQLLEAGGACVEPGEGXXXXXXXXXXXXGKEGMLARPAGWRDPVNRAGVVQVGVLQAFSLSLKPGESVYVALRLLPWKERVKTGSAKWGDLGASWPSHPSARH---------------------DLLHLYNSDATPVPTLRVEVWRSAMRVLDDLLG 2202
            PEC AC GLWD GG+A++ +YRC  C A VHGACR+  +   AC     G                 L  P      +N AGVV+V V+QA+ L L PG+ VY  L+LLPWKER KT SA WGD+GA W   P A                       ++LHL NS+A PVP LRVE+WR A++++D+LLG
Sbjct:  580 PECCACAGLWDEGGTAVSHYYRCAACSAVVHGACREFYQGSSACAPRARGA---------------ALTPPPPLPPLLNCAGVVRVRVMQAYQLPLAPGDVVYAMLQLLPWKERAKTDSAPWGDMGAIWA--PPAXXXXXXXXXXXXXXXXXGGDGALEMLHLENSEAPPVPVLRVELWRRALKIMDELLG 753          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1155.1355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L011_9PHAE4.920e-10552.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G411_ECTSI4.830e-10053.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCX8_9STRA6.510e-3643.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1155contigL-elsbetiae_contig1155:23572..27699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.2
Seed ortholog evalue2.9e-94
Seed eggNOG ortholog2880.D7G411
KEGG koko:K10360,ko:K19839,ko:K20644
KEGG Pathwayko04011,map04011
Hectar predicted targeting categoryother localisation
GOsGO:0001709,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005938,GO:0006996,GO:0007010,GO:0008047,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0030029,GO:0030036,GO:0030154,GO:0030234,GO:0030695,GO:0030865,GO:0030866,GO:0032502,GO:0032970,GO:0033036,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045167,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051179,GO:0051336,GO:0051345,GO:0060589,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0098772,GO:0099568
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG1453@1,KOG1453@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04812
Exons6
Model size2205
Cds size2205
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1155.1355.1prot_L-elsbetiae_contig1155.1355.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1155 23572..27699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.6833124-CDS-L-elsbetiae_contig1155:23571..237011622815360.6833124-CDS-L-elsbetiae_contig1155:23571..23701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 23572..23701 +
1691682860.2916892-CDS-L-elsbetiae_contig1155:23571..237011691682860.2916892-CDS-L-elsbetiae_contig1155:23571..23701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 23572..23701 +
1622815360.694044-CDS-L-elsbetiae_contig1155:24033..248151622815360.694044-CDS-L-elsbetiae_contig1155:24033..24815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 24034..24815 +
1691682860.303509-CDS-L-elsbetiae_contig1155:24033..248151691682860.303509-CDS-L-elsbetiae_contig1155:24033..24815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 24034..24815 +
1622815360.7056-CDS-L-elsbetiae_contig1155:24851..254731622815360.7056-CDS-L-elsbetiae_contig1155:24851..25473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 24852..25473 +
1691682860.31506-CDS-L-elsbetiae_contig1155:24851..254731691682860.31506-CDS-L-elsbetiae_contig1155:24851..25473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 24852..25473 +
1622815360.71857-CDS-L-elsbetiae_contig1155:25919..263321622815360.71857-CDS-L-elsbetiae_contig1155:25919..26332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 25920..26332 +
1691682860.3236697-CDS-L-elsbetiae_contig1155:25919..263321691682860.3236697-CDS-L-elsbetiae_contig1155:25919..26332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 25920..26332 +
1622815360.7306406-CDS-L-elsbetiae_contig1155:26634..267321622815360.7306406-CDS-L-elsbetiae_contig1155:26634..26732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 26635..26732 +
1691682860.3326366-CDS-L-elsbetiae_contig1155:26634..267321691682860.3326366-CDS-L-elsbetiae_contig1155:26634..26732Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 26635..26732 +
1622815360.7398932-CDS-L-elsbetiae_contig1155:27539..276991622815360.7398932-CDS-L-elsbetiae_contig1155:27539..27699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 27540..27699 +
1691682860.3423882-CDS-L-elsbetiae_contig1155:27539..276991691682860.3423882-CDS-L-elsbetiae_contig1155:27539..27699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1155 27540..27699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1155.1355.1

>prot_L-elsbetiae_contig1155.1355.1 ID=prot_L-elsbetiae_contig1155.1355.1|Name=mRNA_L-elsbetiae_contig1155.1355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=735bp
MSFLLSYLDGALDTVTGRYDGEEGGEELSEESSLEEGVGDDAEDSRASDH
SAAAAAAAAAATCVPAGRPPLAPEPPRPAPASLGFGKGLTEIKAREGLHE
QTDSPRQAAPADEDESLMQLLQEESAARLAATGSGPTQAEGGQGKESRRG
DGQRRRKETPRVDLALGPEAPERQRVLLKEEKQVSAVAKAAEEEEEEEGE
EREHKRRSRQLDEEEVKERDRKRTLSLERGRQEEEKRRLAAEAAAAAAAA
EEERASRERERDLRQEQMRARQQADEARQRENQRRLAAESGREAEARCLS
DAARQQDEEERERRSLVEHRRRGPSSVSGRDDPDSQPPTPVRDGRDEGGA
AVSFTRSSRDSTREEAWAAARMLAEEKARAQAIRDAALRAGEKYQDSSGS
AAGAGTGGAGASGAGGAGAGGGTAGGGATISTAALSGESGAAGAERISSN
SRPGSVTLDAVAESGGGAADVTRHAVDAAELDASSGGWRSFFSGRRKEGG
SVTSSVSGSQVDPALSSRPPEAGGAATAPTRPPGAHEFQRVKTSRRPRGA
NGGGAGDPSPPPSPPECAACLGLWDAGGSALNRWYRCRRCGAAVHGACRQ
LLEAGGACVEPGEGGGGGGGGGGGQEGKEGMLARPAGWRDPVNRAGVVQV
GVLQAFSLSLKPGESVYVALRLLPWKERVKTGSAKWGDLGASWPSHPSAR
HDLLHLYNSDATPVPTLRVEVWRSAMRVLDDLLG*
back to top

mRNA from alignment at L-elsbetiae_contig1155:23572..27699+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1155.1355.1 ID=mRNA_L-elsbetiae_contig1155.1355.1|Name=mRNA_L-elsbetiae_contig1155.1355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4128bp|location=Sequence derived from alignment at L-elsbetiae_contig1155:23572..27699+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTTCCTGCTTAGCTATCTCGACGGCGCCCTTGATACCGTAACCGG CCGTTACGATGGAGAGGAGGGAGGGGAAGAGCTGAGCGAGGAAAGTTCGC TGGAAGAAGGTGTTGGAGATGATGCGGAAGGTAAAATTCGTGCCAGTTGC ACGTATGTATGACACTATATACGTGTGATGTCGTTTTTGATCCTTGCGGA CAGACCAGTTCGTGCCGTTGACCAGAAGCAAATGATAATTGTACGTGCGT TTTTTTCAGCAGTAACACCCATCTACACGCCAGCACAACGAGTCGTTGCC GTGCTATGTAGCAGTCGCCTTGAGGTTTATCAACTCGAATGCTTGCTGCC CTCGCGCCAGGTGTGAGGACCAACACCATCGGCGAGGGATCGTCCAAGCA GCAACCGGCGTCCCCCCCGGCTGCTACAAGGCTGGGACTTCCCTCCCCAG AAGCCCACCAAGACAGCCGCGCTAGCGACCATTCTGCCGCCGCCGCCGCC GCGGCTGCTGCTGCTACCTGCGTGCCAGCCGGGAGGCCACCGTTGGCGCC GGAGCCACCAAGACCAGCACCGGCAAGTTTGGGGTTCGGCAAGGGTCTGA CGGAGATCAAGGCGAGAGAGGGTCTGCACGAGCAGACAGACTCCCCCCGG CAAGCGGCTCCTGCCGACGAGGACGAGTCGCTGATGCAGCTACTGCAGGA AGAGTCGGCTGCCAGGTTGGCGGCGACTGGGTCCGGGCCCACCCAGGCTG AAGGTGGACAGGGCAAGGAAAGCAGGAGAGGAGACGGACAGAGGCGGCGG AAAGAAACGCCGCGAGTAGACCTCGCGCTCGGACCTGAGGCTCCAGAGCG GCAGCGGGTGCTGCTCAAAGAGGAGAAGCAAGTGTCGGCTGTGGCAAAGG CGGCGGAGGAGGAGGAGGAGGAGGAGGGAGAGGAAAGGGAGCACAAACGA CGGTCGCGCCAGCTTGACGAGGAGGAGGTTAAAGAGCGAGATCGTAAGCG TACTTTGAGTCTGGAGCGAGGGCGTCAGGAGGAGGAAAAGCGACGCTTAG CCGCTGAAGCGGCGGCGGCAGCGGCCGCAGCAGAGGAAGAGAGGGCTTCG AGAGAAAGAGAAAGGGATCTTCGGCAAGAGCAGATGCGCGCGCGACAGCA AGCAGACGAGGCACGGCAGCGTGAAAACCAACGCCGCCTTGCGGCAGAGA GCGGCCGCGAGGCGGAAGCGCGGTGCCTCTCCGACGCCGCCCGCGTTGCC GCCGCCGCAAGCATGGAGGCGGCGCAACAGCAGCAGGACGAGGAAGAACG AGAGCGGCGCTCTCTCGTCGAACACCGTCGCCGAGGACCATCGTCGGTAA GCGGAAGAGACGACCCCGACTCCCAACCCCCGACCCCCGTCAGGGACGGC AGAGACGAAGGTGGGGCTGCTGTGTCGTTCACCCGCAGCAGCCGCGACAG CACTCGGGAAGAGGCGTGGGCGGCGGCGAGGATGCTCGCGGAGGAGAAGG CCCGCGCGCAAGCCATTCGCGACGCTGCTTTGAGGGCAGGGGAGAAGTAT CAAGACAGTAGCGGCTCCGCAGCTGGTGCTGGTACTGGTGGTGCTGGTGC TAGTGGTGCTGGTGGTGCTGGTGCTGGTGGTGGCACCGCCGGCGGTGGCG CTACGATTTCCACCGCCGCTCTATCGGGCGAGAGCGGCGCTGCTGGCGCC GAGCGAATTAGCAGCAACTCGCGCCCAGGAAGCGTTACCCTTGACGCCGT GGCGGAGAGTGGGGGGGGGGCTGCTGACGTCACGCGCCACGCGGTGGACG CTGCAGAATTGGATGCTTCCAGTGGTGGCTGGAGGAGTTTTTTTTCTGGA CGGAGGAAAGAAGGCGGTTCTGTGACGTCCAGTGTGTCCGGCAGCCAGGT AGGTGGGACGGGGAACAATGGTGTGGTTGTTTGCTCGATCTGTTCCTCTC GACTCGCCCGCCCTCGTCCTCACTCTTTGATGCACCGCCTCCACGATCAT TCGAGCCACGCAGCGATGCGTGAGCGAGACACAGAGGAAAGCAGAAGGTG CATAGTACACAGGTACAACTTTCGAGATGATGCTGTGTGTGATATGTGGA TGTGGAGGCGTGTGTCATATGGCCGGTTCCCGGCGCCTGTTTGCGCCGGC CGTGCAGGCGTTTTGTCGTGGCCGCTTTTAACGGCGCCAGCGAACGAACG GTGCCAAACCGGTCCCCCCCAAAGCTGTAAAGAAGCAATAACGATGATTT TTTTTTTTTCAAGTCCACAAAAATTTCCGGCACTTTGTGACAGGCTGGCC TGGCTCCACGCTCCTAAATATGTACGTTTCAGGTCAGCACCGCCGTAGAT CCAGCGCTCTCCTCTCGGCCCCCCGAGGCCGGGGGCGCCGCTACCGCTCC CACCCGTCCGCCGGGCGCCCACGAGTTCCAGCGTGTGAAAACGAGCCGGC GGCCTCGCGGGGCGAACGGCGGAGGTGCAGGCGACCCGTCTCCGCCCCCG TCGCCCCCCGAGTGCGCGGCCTGCCTCGGCCTGTGGGACGCCGGGGGGTC CGCGCTGAACCGGTGGTACCGGTGCCGCCGCTGCGGTGCCGCGGTGCACG GCGCCTGCCGGCAGCTCCTGGAGGCCGGGGGGGCTTGCGTGGAGCCCGGC GAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGGCAGGAGGGCAAAGA GGGAATGCTCGCGAGGCCGGCGGGGTGGCGGGACCCGGTGAACCGTGCCG GTGTCGTGCAGGTCAGAGACGGCATGGTCGACATAAGTATGCGTGCGTCC GGCCTTGGTTGTGGGTGGCTTTTGGACCAGGTGGTTTTGTTTTGTTGCGC TTGGGGGTTGGGGACCGCAGAGCCTTTCCCTAGCTGGGGCTCCGTTTTGC CTGCCTTCGCACTGCTGCTGCTGCTGCTGCTGCTGGTGCTGCTGCTGGTG CTGCTGCTGGGGTGTTGCTGCTCCTGCTGTGTACGCCGGTGTTGTTGCTG CTGTGTACGCCGGTGCTCACTCGAGGCCGAATCCGCAACTGCGCCAACGA ACCCGGCTTCCAGGTGGGAGTCCTTCAGGCCTTCAGCCTCTCCCTGAAGC CGGGAGAGAGCGTCTACGTAGCCCTGCGCCTGCTGCCGTGGAAGGAAAGG GTCAAGACCGGGTGAGATGCGCAATCCACATACATCTGACTGATGCCGTT GGTTTTGCCGAGCGTGCCCCGATGCTCAGAGACATTCAAGCAGCGCGTTT TTGGCACGCCTTGTCGCAACATTGTTTCTCGGCTCTGCGTTCGTGGCCGA CTTCTACAACCCCATAAGTATCCACTCCGAGCGTTTTCGGTGGCGGTGTC GCAGCAGTGAGCGGCCCCTGCTGGATTCATCAGGGGGGGTGGTAGCCGAG CAGCAGCTACTGTGTCGCTCTGACGGACTGCCCTTAACGTTCTCTTTTTT AATAAAACGTTCTACATACATGCAAATGTCAGCGGTCTACGTCCAAACCG TACACAAGACAAAACAAAATAAACGTTTTAAGGGACTCGCTGACTGACTC CTGTACACAATACAGAAGTGTAACCCTCTTTCATTTTCTTCTGTTTCTTC TTCCATGCGGACGCCTGTTTTTTTTAATAAAACGTTCTACATGCAAATTT CAGCGGCTCTACGTCCGTCCGGCCCGTGAAAGCAAGTTGTTCCAAGGGGA CTGACTGACTGACTGACTGACTGACTGACTGCTGTTGTAGACACGCAAAA CAATGTAACAACCCTCTCTTTGAAAGAAAAATCAGGCAAAGATAAATCAG GCAGTCAGAAACGAAACCTAGCCCACATTTGAGACGGGACTCCGTGGGAT TCAACCGGCATTCTTTGCCCCTCTTCTCTCTTTTTCATACATACATGCGA CGCCGGGCGGACGCGCCTTTCTTCACGTCGCTTGACCCGATGACCCGATG ACCCGGTGACCCCGAAAGATCGGCCAAGTGGGGGGACCTCGGCGCGTCCT GGCCGTCGCACCCCTCCGCCAGGCACGACCTGCTGCATCTGTACAACAGC GACGCGACGCCGGTGCCGACCCTGAGGGTGGAGGTGTGGCGGTCCGCCAT GCGAGTGCTGGACGACCTACTCGGGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1155:23572..27699+

>mRNA_L-elsbetiae_contig1155.1355.1 ID=mRNA_L-elsbetiae_contig1155.1355.1|Name=mRNA_L-elsbetiae_contig1155.1355.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4410bp|location=Sequence derived from alignment at L-elsbetiae_contig1155:23572..27699+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTTCCTGCTTAGCTATCTCGACGGCGCCCTTGATACCGTAACCGG
CCGTTACGATGGAGAGGAGGGAGGGGAAGAGCTGAGCGAGGAAAGTTCGC
TGGAAGAAGGTGTTGGAGATGATGCGGAAGATGTCGTTCCTGCTTAGCTA
TCTCGACGGCGCCCTTGATACCGTAACCGGCCGTTACGATGGAGAGGAGG
GAGGGGAAGAGCTGAGCGAGGAAAGTTCGCTGGAAGAAGGTGTTGGAGAT
GATGCGGAAGACAGCCGCGCTAGCGACCATTCTGCCGCCGCCGCCGCCGC
GGCTGCTGCTGCTACCTGCGTGCCAGCCGGGAGGCCACCGTTGGCGCCGG
AGCCACCAAGACCAGCACCGGCAAGTTTGGGGTTCGGCAAGGGTCTGACG
GAGATCAAGGCGAGAGAGGGTCTGCACGAGCAGACAGACTCCCCCCGGCA
AGCGGCTCCTGCCGACGAGGACGAGTCGCTGATGCAGCTACTGCAGGAAG
AGTCGGCTGCCAGGTTGGCGGCGACTGGGTCCGGGCCCACCCAGGCTGAA
GGTGGACAGGGCAAGGAAAGCAGGAGAGGAGACGGACAGAGGCGGCGGAA
AGAAACGCCGCGAGTAGACCTCGCGCTCGGACCTGAGGCTCCAGAGCGGC
AGCGGGTGCTGCTCAAAGAGGAGAAGCAAGTGTCGGCTGTGGCAAAGGCG
GCGGAGGAGGAGGAGGAGGAGGAGGGAGAGGAAAGGGAGCACAAACGACG
GTCGCGCCAGCTTGACGAGGAGGAGGTTAAAGAGCGAGATCGTAAGCGTA
CTTTGAGTCTGGAGCGAGGGCGTCAGGAGGAGGAAAAGCGACGCTTAGCC
GCTGAAGCGGCGGCGGCAGCGGCCGCAGCAGAGGAAGAGAGGGCTTCGAG
AGAAAGAGAAAGGGATCTTCGGCAAGAGCAGATGCGCGCGCGACAGCAAG
CAGACGAGGCACGGCAGCGTGAAAACCAACGCCGCCTTGCGGCAGAGAGC
GGCCGCGAGGCGGAAGCGCGGTGCCTCTCCGACGCCGCCCGCACAGCCGC
GCTAGCGACCATTCTGCCGCCGCCGCCGCCGCGGCTGCTGCTGCTACCTG
CGTGCCAGCCGGGAGGCCACCGTTGGCGCCGGAGCCACCAAGACCAGCAC
CGGCAAGTTTGGGGTTCGGCAAGGGTCTGACGGAGATCAAGGCGAGAGAG
GGTCTGCACGAGCAGACAGACTCCCCCCGGCAAGCGGCTCCTGCCGACGA
GGACGAGTCGCTGATGCAGCTACTGCAGGAAGAGTCGGCTGCCAGGTTGG
CGGCGACTGGGTCCGGGCCCACCCAGGCTGAAGGTGGACAGGGCAAGGAA
AGCAGGAGAGGAGACGGACAGAGGCGGCGGAAAGAAACGCCGCGAGTAGA
CCTCGCGCTCGGACCTGAGGCTCCAGAGCGGCAGCGGGTGCTGCTCAAAG
AGGAGAAGCAAGTGTCGGCTGTGGCAAAGGCGGCGGAGGAGGAGGAGGAG
GAGGAGGGAGAGGAAAGGGAGCACAAACGACGGTCGCGCCAGCTTGACGA
GGAGGAGGTTAAAGAGCGAGATCGTAAGCGTACTTTGAGTCTGGAGCGAG
GGCGTCAGGAGGAGGAAAAGCGACGCTTAGCCGCTGAAGCGGCGGCGGCA
GCGGCCGCAGCAGAGGAAGAGAGGGCTTCGAGAGAAAGAGAAAGGGATCT
TCGGCAAGAGCAGATGCGCGCGCGACAGCAAGCAGACGAGGCACGGCAGC
GTGAAAACCAACGCCGCCTTGCGGCAGAGAGCGGCCGCGAGGCGGAAGCG
CGGTGCCTCTCCGACGCCGCCCGCCAGCAGGACGAGGAAGAACGAGAGCG
GCGCTCTCTCGTCGAACACCGTCGCCGAGGACCATCGTCGGTAAGCGGAA
GAGACGACCCCGACTCCCAACCCCCGACCCCCGTCAGGGACGGCAGAGAC
GAAGGTGGGGCTGCTGTGTCGTTCACCCGCAGCAGCCGCGACAGCACTCG
GGAAGAGGCGTGGGCGGCGGCGAGGATGCTCGCGGAGGAGAAGGCCCGCG
CGCAAGCCATTCGCGACGCTGCTTTGAGGGCAGGGGAGAAGTATCAAGAC
AGTAGCGGCTCCGCAGCTGGTGCTGGTACTGGTGGTGCTGGTGCTAGTGG
TGCTGGTGGTGCTGGTGCTGGTGGTGGCACCGCCGGCGGTGGCGCTACGA
TTTCCACCGCCGCTCTATCGGGCGAGAGCGGCGCTGCTGGCGCCGAGCGA
ATTAGCAGCAACTCGCGCCCAGGAAGCGTTACCCTTGACGCCGTGGCGGA
GAGTGGGGGGGGGGCTGCTGACGTCACGCGCCACGCGGTGGACGCTGCAG
AATTGGATGCTTCCAGTGGTGGCTGGAGGAGTTTTTTTTCTGGACGGAGG
AAAGAAGGCGGTTCTGTGACGTCCAGTGTGTCCGGCAGCCAGGTAGCAGC
AGGACGAGGAAGAACGAGAGCGGCGCTCTCTCGTCGAACACCGTCGCCGA
GGACCATCGTCGGTAAGCGGAAGAGACGACCCCGACTCCCAACCCCCGAC
CCCCGTCAGGGACGGCAGAGACGAAGGTGGGGCTGCTGTGTCGTTCACCC
GCAGCAGCCGCGACAGCACTCGGGAAGAGGCGTGGGCGGCGGCGAGGATG
CTCGCGGAGGAGAAGGCCCGCGCGCAAGCCATTCGCGACGCTGCTTTGAG
GGCAGGGGAGAAGTATCAAGACAGTAGCGGCTCCGCAGCTGGTGCTGGTA
CTGGTGGTGCTGGTGCTAGTGGTGCTGGTGGTGCTGGTGCTGGTGGTGGC
ACCGCCGGCGGTGGCGCTACGATTTCCACCGCCGCTCTATCGGGCGAGAG
CGGCGCTGCTGGCGCCGAGCGAATTAGCAGCAACTCGCGCCCAGGAAGCG
TTACCCTTGACGCCGTGGCGGAGAGTGGGGGGGGGGCTGCTGACGTCACG
CGCCACGCGGTGGACGCTGCAGAATTGGATGCTTCCAGTGGTGGCTGGAG
GAGTTTTTTTTCTGGACGGAGGAAAGAAGGCGGTTCTGTGACGTCCAGTG
TGTCCGGCAGCCAGGTAGATCCAGCGCTCTCCTCTCGGCCCCCCGAGGCC
GGGGGCGCCGCTACCGCTCCCACCCGTCCGCCGGGCGCCCACGAGTTCCA
GCGTGTGAAAACGAGCCGGCGGCCTCGCGGGGCGAACGGCGGAGGTGCAG
GCGACCCGTCTCCGCCCCCGTCGCCCCCCGAGTGCGCGGCCTGCCTCGGC
CTGTGGGACGCCGGGGGGTCCGCGCTGAACCGGTGGTACCGGTGCCGCCG
CTGCGGTGCCGCGGTGCACGGCGCCTGCCGGCAGCTCCTGGAGGCCGGGG
GGGCTTGCGTGGAGCCCGGCGAGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGCGGGCAGGAGGGCAAAGAGGGAATGCTCGCGAGGCCGGCGGGGTGGCG
GGACCCGGTGAACCGTGCCGGTGTCGTGCAGATCCAGCGCTCTCCTCTCG
GCCCCCCGAGGCCGGGGGCGCCGCTACCGCTCCCACCCGTCCGCCGGGCG
CCCACGAGTTCCAGCGTGTGAAAACGAGCCGGCGGCCTCGCGGGGCGAAC
GGCGGAGGTGCAGGCGACCCGTCTCCGCCCCCGTCGCCCCCCGAGTGCGC
GGCCTGCCTCGGCCTGTGGGACGCCGGGGGGTCCGCGCTGAACCGGTGGT
ACCGGTGCCGCCGCTGCGGTGCCGCGGTGCACGGCGCCTGCCGGCAGCTC
CTGGAGGCCGGGGGGGCTTGCGTGGAGCCCGGCGAGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGCGGGCAGGAGGGCAAAGAGGGAATGCTCGCGAGGC
CGGCGGGGTGGCGGGACCCGGTGAACCGTGCCGGTGTCGTGCAGGTGGGA
GTCCTTCAGGCCTTCAGCCTCTCCCTGAAGCCGGGAGAGAGCGTCTACGT
AGCCCTGCGCCTGCTGCCGTGGAAGGAAAGGGTCAAGACCGGGTGGGAGT
CCTTCAGGCCTTCAGCCTCTCCCTGAAGCCGGGAGAGAGCGTCTACGTAG
CCCTGCGCCTGCTGCCGTGGAAGGAAAGGGTCAAGACCGGATCGGCCAAG
TGGGGGGACCTCGGCGCGTCCTGGCCGTCGCACCCCTCCGCCAGGCACGA
CCTGCTGCATCTGTACAACAGCGACGCGACGCCGGTGCCGACCCTGAGGG
TGGAGGTGTGGCGGTCCGCCATGCGAGTGCTGGACGACCTACTCGGGTGA
ATCGGCCAAGTGGGGGGACCTCGGCGCGTCCTGGCCGTCGCACCCCTCCG
CCAGGCACGACCTGCTGCATCTGTACAACAGCGACGCGACGCCGGTGCCG
ACCCTGAGGGTGGAGGTGTGGCGGTCCGCCATGCGAGTGCTGGACGACCT
ACTCGGGTGA
back to top