mRNA_L-elsbetiae_contig11537.1348.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11537.1348.1
Unique NamemRNA_L-elsbetiae_contig11537.1348.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11537.1348.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.160e-33
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 NQAVTGARLMKINAWEPALEKEIRRQEVVRAEEVRVLLKATLLRAVNEAMFFVQPAVVSCLVFVTYHLLGNVLKPQQVHT 240
            NQAV GARLMKINAWEPALEKEIRR   VRAEE+RVLLKATLLRA+NEAMFFVQPAV+SCLVF TYHLLGNVL P+QV T
Sbjct:  222 NQAVAGARLMKINAWEPALEKEIRR---VRAEEIRVLLKATLLRAINEAMFFVQPAVISCLVFATYHLLGNVLAPRQVFT 298          
BLAST of mRNA_L-elsbetiae_contig11537.1348.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.460e-33
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1
Query:    1 NQAVTGARLMKINAWEPALEKEIRRQEVVRAEEVRVLLKATLLRAVNEAMFFVQPAVVSCLVFVTYHLLGNVLKPQQVHT 240
            NQAVTGARLMKINAWEPALEKEIRR   VRAEE+RVLLKATLLRA+NEAMFFVQPAV+SCLVF TYHLLGNVL  +QV T
Sbjct:  275 NQAVTGARLMKINAWEPALEKEIRR---VRAEEIRVLLKATLLRAINEAMFFVQPAVLSCLVFATYHLLGNVLTARQVFT 351          
BLAST of mRNA_L-elsbetiae_contig11537.1348.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 7.450e-33
Identity = 68/80 (85.00%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 NQAVTGARLMKINAWEPALEKEIRRQEVVRAEEVRVLLKATLLRAVNEAMFFVQPAVVSCLVFVTYHLLGNVLKPQQVHT 240
            NQAV GARLMKINAWEPALEKEIRR   VRAEE+RVLL ATLLRAVNEAMFF+QPAV+SCLVF TYHLLGNVL P+QV T
Sbjct:  175 NQAVAGARLMKINAWEPALEKEIRR---VRAEEIRVLLTATLLRAVNEAMFFIQPAVISCLVFATYHLLGNVLAPRQVFT 251          
BLAST of mRNA_L-elsbetiae_contig11537.1348.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.770e-19
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 1
Query:   85 VRAEEVRVLLKATLLRAVNEAMFFVQPAVVSCLVFVTYHLLGNVLKPQQVHT 240
            VRAEE+RVLLKATLLRA+NEAMFFVQPAV+SCLVF TYHLLGNVL P+QV T
Sbjct:  113 VRAEEIRVLLKATLLRAINEAMFFVQPAVLSCLVFATYHLLGNVLTPRQVFT 164          
BLAST of mRNA_L-elsbetiae_contig11537.1348.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.140e-18
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:   91 AEEVRVLLKATLLRAVNEAMFFVQPAVVSCLVFVTYHLLGNVLKPQQVHT 240
            AEE+RVLLKATLLRA+NEAMFFVQPAV+SCLVF TYHLLGNVL P+QV T
Sbjct:  112 AEEIRVLLKATLLRAINEAMFFVQPAVISCLVFATYHLLGNVLAPRQVFT 161          
BLAST of mRNA_L-elsbetiae_contig11537.1348.1 vs. uniprot
Match: A0A835YMC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.930e-12
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    4 QAVTGARLMKINAWEPALEKEIRRQEVVRAEEVRVLLKATLLRAVNEAMFFVQPAVVSCLVFVTYHL-LGNVLKPQQV 234
            QAVTGA L+K++AWEPAL +EI +    R+ EV+VL  A  LRA NE++FFVQP V++ LVF  +   LGN L P  V
Sbjct:  338 QAVTGAHLVKMSAWEPALLREIGK---ARSAEVKVLRSAAELRAANESLFFVQPTVLALLVFGVHSAALGNELTPSNV 412          
BLAST of mRNA_L-elsbetiae_contig11537.1348.1 vs. uniprot
Match: A0A0L0F1U5_9EUKA (ABC transmembrane type-1 domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0F1U5_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 9.360e-12
Identity = 31/83 (37.35%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 NQAVTGARLMKINAWEPALEKEIRRQEVVRAEEVRVLLKATLLRAVNEAMFFVQPAVVSCLVFVTYHLLGNVLKPQQVHTCWS 249
            ++ + G R+MK+ AWE +  + +   + +R++E+  + KA ++R  N AMFF  P++++C +FVTYHL GN L  ++V T  S
Sbjct:    2 SEVLMGVRVMKMYAWEESFARVV---QSLRSQEMIHVRKAAVMRGFNYAMFFASPSIITCAIFVTYHLTGNQLTSKKVFTVLS 81          
BLAST of mRNA_L-elsbetiae_contig11537.1348.1 vs. uniprot
Match: A0A433D3T0_9FUNG (ABC transmembrane type-1 domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D3T0_9FUNG)

HSP 1 Score: 65.5 bits (158), Expect = 4.020e-11
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   16 GARLMKINAWEPALEKEIRRQEVVRAEEVRVLLKATLLRAVNEAMFFVQPAVVSCLVFVTYHLLGNVLKPQQVHTCWS 249
            G  L+K++AWE  +++ I     +R EE+  + +A  LRA+NEA+FF  PAVVS + F+T+  LGN L+P  V  C +
Sbjct:    2 GINLVKLSAWEEPMQRRINE---LRDEEIACIRRANALRAMNEALFFFFPAVVSAVAFITFWALGNQLRPDNVFPCMA 76          
BLAST of mRNA_L-elsbetiae_contig11537.1348.1 vs. uniprot
Match: A0A433QHE7_9FUNG (ABC transporter transmembrane region-domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QHE7_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 9.560e-11
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 NQAVTGARLMKINAWEPALEKEIRRQEVVRAEEVRVLLKATLLRAVNEAMFFVQPAVVSCLVFVTYHLLGNVLKPQQVHTCWS 249
            +  + G  L+K++AWE  +++ I     +R EE+  + +A  LRA+NEA+FF  PAVVS + F+T+  LGN L+P  V  C +
Sbjct:  154 SDVLMGINLVKLSAWEEPMQRRINE---LRDEEIACIRRANALRAMNEALFFFFPAVVSAVAFITFWALGNQLRPDNVFPCMA 233          
BLAST of mRNA_L-elsbetiae_contig11537.1348.1 vs. uniprot
Match: A0A433P5I4_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433P5I4_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 6.850e-10
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   16 GARLMKINAWEPALEKEIRRQEVVRAEEVRVLLKATLLRAVNEAMFFVQPAVVSCLVFVTYHLLGNVLKPQQVHT 240
            G  L+K++AWE  +++ I     +RA E+  + +A  LRAVNEA+FF  PAVVS   F+T+  LGN L P  V T
Sbjct:    2 GINLVKLSAWEEPMQRRI---NDIRANEIAYVRRANALRAVNEALFFFFPAVVSTTTFITFWALGNQLSPDNVFT 73          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11537.1348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LSW4_ECTSI1.160e-3386.25Multidrug resistance-associated protein-like prote... [more]
D8LSW6_ECTSI5.460e-3386.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSW3_ECTSI7.450e-3385.00Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDN6_9PHAE1.770e-1986.54ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5JDL0_9PHAE1.140e-1886.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835YMC7_9STRA4.930e-1253.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0L0F1U5_9EUKA9.360e-1237.35ABC transmembrane type-1 domain-containing protein... [more]
A0A433D3T0_9FUNG4.020e-1142.31ABC transmembrane type-1 domain-containing protein... [more]
A0A433QHE7_9FUNG9.560e-1139.76ABC transporter transmembrane region-domain-contai... [more]
A0A433P5I4_9FUNG6.850e-1045.33P-loop containing nucleoside triphosphate hydrolas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11537contigL-elsbetiae_contig11537:2964..3890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.5e-24
Seed eggNOG ortholog2880.D8LSW4
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size249
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11537.1348.1prot_L-elsbetiae_contig11537.1348.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11537 2964..3863 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.1517487-CDS-L-elsbetiae_contig11537:2963..31291622815360.1517487-CDS-L-elsbetiae_contig11537:2963..3129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11537 2964..3129 -
1691682859.963031-CDS-L-elsbetiae_contig11537:2963..31291691682859.963031-CDS-L-elsbetiae_contig11537:2963..3129Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11537 2964..3129 -
1622815360.1613722-CDS-L-elsbetiae_contig11537:3807..38631622815360.1613722-CDS-L-elsbetiae_contig11537:3807..3863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11537 3808..3863 -
1691682859.9748135-CDS-L-elsbetiae_contig11537:3807..38631691682859.9748135-CDS-L-elsbetiae_contig11537:3807..3863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11537 3808..3863 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.1726801-UTR-L-elsbetiae_contig11537:3863..38901622815360.1726801-UTR-L-elsbetiae_contig11537:3863..3890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11537 3864..3890 -
1691682859.983563-UTR-L-elsbetiae_contig11537:3863..38901691682859.983563-UTR-L-elsbetiae_contig11537:3863..3890Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11537 3864..3890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11537.1348.1

>prot_L-elsbetiae_contig11537.1348.1 ID=prot_L-elsbetiae_contig11537.1348.1|Name=mRNA_L-elsbetiae_contig11537.1348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
MKINAWEPALEKEIRRQEVVRAEEVRVLLKATLLRAVNEAMFFVQPAVVS
CLVFVTYHLLGNVLKPQQVHTCWS
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mRNA from alignment at L-elsbetiae_contig11537:2964..3890-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11537.1348.1 ID=mRNA_L-elsbetiae_contig11537.1348.1|Name=mRNA_L-elsbetiae_contig11537.1348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=927bp|location=Sequence derived from alignment at L-elsbetiae_contig11537:2964..3890- (Laminarionema elsbetiae ELsaHSoW15)
AATCAAGCCGTCACGGGGGCGAGGCTGATGAAGATCAACGCCTGGGAGCC CGCCCTGGAGAAGGAGATCCGCAGGCAAGAAGTGTAGATTTCTTCGGCTT GAAGCGGATGTAGGTGCATATGGCGTCACCTTTATGGGGTGTGTTTGTGC GCGCGGTCGGAAATATTCCACCTCTATCTAAACACGATGAATGCATTATG TAGAGGCCGGGAGCCGACACTGCAGGTAGGTAGGGAGGTGGTGTTTTGCG CCGCACTACAATAGGGCCAGAAGGGGCGTCTCTTTTGGTATTGATGTGCA GTTGTTGTTGTTGTTGTTTCTCACTTTAGCTCTCTAGATAGTCCAAAACC GCACATGGGGGCCCGTGGTCACAGAAACAGGGCGCACTGGTCGCCGCTCG AGAAAAAAGTAAAAACAAACTATTATGCGTATGATACACGCCAGGCAATA CTAGACTGACTCCCGAAGGGATCTTGCGTCTCGCAGTGAAAGATCGTGGC CTCACCTGCGCTCCATAGTTCGGCGCGCCTGGAGTGTGCTCATTTATCTC GACAGCAGTAGCAGAAACGGCGAGAGTATCCAAAGCGAGGCCGCTGATCC GACCATCTAAATCAGCCAATCACCCAACAGCTCTACCCTGTCAAACCTGT CATCGGGCCTTCACAAATCCCGCCGTGAAAGAACGCGCTTTTGCACACGA TCACTCGCTGTCTTTGTTGTCCCCAATTTCTTCTCTTGGTTGAAAAAAAC AAAAACAACAGAGTGCGTGCGGAAGAGGTGCGCGTTCTCCTGAAGGCCAC CCTCCTGAGGGCCGTCAACGAGGCCATGTTCTTCGTGCAGCCGGCCGTGG TGTCGTGCCTGGTGTTTGTCACCTACCATCTACTCGGAAACGTGCTCAAG CCCCAGCAGGTACATACCTGCTGGTCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11537:2964..3890-

>mRNA_L-elsbetiae_contig11537.1348.1 ID=mRNA_L-elsbetiae_contig11537.1348.1|Name=mRNA_L-elsbetiae_contig11537.1348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig11537:2964..3890- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGATCAACGCCTGGGAGCCCGCCCTGGAGAAGGAGATCCGCAGGCA
AGAAGTATGAAGATCAACGCCTGGGAGCCCGCCCTGGAGAAGGAGATCCG
CAGGCAAGAAGTAGTGCGTGCGGAAGAGGTGCGCGTTCTCCTGAAGGCCA
CCCTCCTGAGGGCCGTCAACGAGGCCATGTTCTTCGTGCAGCCGGCCGTG
GTGTCGTGCCTGGTGTTTGTCACCTACCATCTACTCGGAAACGTGCTCAA
GCCCCAGCAGGTACATACCTGCTGGTCGAGTGCGTGCGGAAGAGGTGCGC
GTTCTCCTGAAGGCCACCCTCCTGAGGGCCGTCAACGAGGCCATGTTCTT
CGTGCAGCCGGCCGTGGTGTCGTGCCTGGTGTTTGTCACCTACCATCTAC
TCGGAAACGTGCTCAAGCCCCAGCAGGTACATACCTGCTGGTCG
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