mRNA_L-elsbetiae_contig11537.1347.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11537.1347.1
Unique NamemRNA_L-elsbetiae_contig11537.1347.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11537.1347.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 5.140e-15
Identity = 43/63 (68.25%), Postives = 47/63 (74.60%), Query Frame = 2 
Query:    2 STSESWVSLKRMETILLMEENEILTAPLREFDLAVKPQEGPPPKLLAVVPVLVSPAPIGLGST 190
            +TSESWVS+KRMETILLMEENE LTAPLREFDLA+KP +G PP   A      S  P G GST
Sbjct:  373 TTSESWVSIKRMETILLMEENETLTAPLREFDLAIKPDKGMPPNPPASAAAAAS-TPTGSGST 434
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BLAST of mRNA_L-elsbetiae_contig11537.1347.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.560e-14
Identity = 44/69 (63.77%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:    2 STSESWVSLKRMETILLMEENEILTAPLREFDLAVKPQEGPPPKLLAVVPVLVSPA--PIGLGSTASPP 202
            +TSESWVS+KRMETILLMEENE L APLREFDLA+KP +  PP   A        A  P G GST SPP
Sbjct:  186 TTSESWVSIKRMETILLMEENETLIAPLREFDLAIKPDKRVPPNPPAAXXXXXXEASTPTGSGSTPSPP 254
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BLAST of mRNA_L-elsbetiae_contig11537.1347.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.030e-12
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 2 
Query:   11 ESWVSLKRMETILLMEENEILTAPLREFDLAVKPQEGPPPK 133
            ESWVS+KR+ETILLMEENE LTAPLREFDLA+KP +G PPK
Sbjct:  186 ESWVSIKRIETILLMEENEDLTAPLREFDLAIKPDKGAPPK 226
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11537.1347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSW6_ECTSI5.140e-1568.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDN6_9PHAE4.560e-1463.77ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5JDL0_9PHAE1.030e-1282.93ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11537contigL-elsbetiae_contig11537:1357..2633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size253
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815360.1130204-CDS-L-elsbetiae_contig11537:1357..15511622815360.1130204-CDS-L-elsbetiae_contig11537:1357..1551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11537 1358..1551 -
1691682859.940434-CDS-L-elsbetiae_contig11537:1357..15511691682859.940434-CDS-L-elsbetiae_contig11537:1357..1551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11537 1358..1551 -
1622815360.122311-CDS-L-elsbetiae_contig11537:2575..26331622815360.122311-CDS-L-elsbetiae_contig11537:2575..2633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11537 2576..2633 -
1691682859.9525652-CDS-L-elsbetiae_contig11537:2575..26331691682859.9525652-CDS-L-elsbetiae_contig11537:2575..2633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11537 2576..2633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11537.1347.1prot_L-elsbetiae_contig11537.1347.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11537 1358..2633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11537.1347.1

>prot_L-elsbetiae_contig11537.1347.1 ID=prot_L-elsbetiae_contig11537.1347.1|Name=mRNA_L-elsbetiae_contig11537.1347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
EYERELGFPQADGDNPPHGGERDPHGPAPRVRPRGQAAGRAAAQAPRRRP
RARLPGADRARLHRLTPWSSPQPFRRGCSCPTTD
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mRNA from alignment at L-elsbetiae_contig11537:1357..2633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11537.1347.1 ID=mRNA_L-elsbetiae_contig11537.1347.1|Name=mRNA_L-elsbetiae_contig11537.1347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1277bp|location=Sequence derived from alignment at L-elsbetiae_contig11537:1357..2633- (Laminarionema elsbetiae ELsaHSoW15)
GAGTACGAGCGAGAGCTGGGTTTCCCTCAAGCGGATGGAGACAATCCTCC
TCATGGAGGTGGGGCGCCGGTCTTACTGTCTTGTCTCATCGCATTTATTG
TCGTGGGAGGCACACAAGACTACGCCCGTCCTTGGTAGCCATTCCTCACC
GCCTTACTTGCATCCTGCGTTAAGACCAGAAGACTTGCTATCTAACTCCA
TGATACATGTGTGAGTGCGGTATTGTACGAACAAGGGTTTGCGTAAAAAC
TCGCCAGAGTGGACAAGTTTATCACAGCAACAGGGGCGTGTCCGTCCATC
GAAAAGCCAAAGCAATGTCACACCCCGTGAAAGGTCGGGTCGTTCGGCCC
CCTTCCGATGCTAAACTCTCTCGTGAGACTTTGAGGTATGGCGTTATCAA
GCGAAGTCTCGTTCAAGAGTCGTACCCATAGTTTTAGAACAAAGCATGTT
TGTTTCAGGGGTCCCCCTCTTGAGACCCACTAGGTGACGCCTGTCGGCTA
CGTCATGCTATACAAAGAAGCATCACCGCAACGGGCATGTTGCGCACACA
CCGAAACGTGTGGCAGGCGCCCGAATAAATGGGAAGAAACACACACACAC
AACAAACACTACGTATCACCTGTCGGCATAACAATGACACATTATTTGTT
CGGGTAGCTATGTGTGACCCCGGTTGGGTCGCGCAGCTAGTCGTAGTGGA
GGAAGGGGGCCAGTGGGACAGGCGACGAATAAGCCAATGATGGGAGGAAA
AATAAGTAAATAAACATACACATCAGGGCCACCTTTTTCGGCAACGGCCC
TCTCTTTGGCATGTCCGAGACCAACCTCGTCACAGCTTCCCGCCATCCAG
CCATGAATCGCCCACGGTCGCAGCGTTTCCCTTCTCTCGCATGCAAAGTA
AGCCATAGGTCGAATCTCGCGGCTCAAGTGTCAGCCAAGATAGACTGCGC
TGCGCCTCTTTTCCCTTGCCGACAAAGGCAGACTTGCGCATGCATATGCC
GGAGTGGCCGCCGTAACGGACCCAACCGCCGCTGCACCGCCAAACCCCGG
CACCCGAAAAAACCTCCGACCTCTTCCCGCAGGAGAACGAGATCCTCACG
GCCCCGCTCCGAGAGTTCGACCTCGCGGTCAAGCCGCAGGAAGGGCCGCC
GCCCAAGCTCCTCGCCGTCGTCCCCGTGCTCGTCTCCCCGGCGCCGATAG
GGCTAGGCTCCACCGCCTCACCCCCTGGTCCTCTCCCCAACCTTTCCGGC
GAGGCTGCTCCTGTCCCACCACCGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11537:1357..2633-

>mRNA_L-elsbetiae_contig11537.1347.1 ID=mRNA_L-elsbetiae_contig11537.1347.1|Name=mRNA_L-elsbetiae_contig11537.1347.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig11537:1357..2633- (Laminarionema elsbetiae ELsaHSoW15)
GAGTACGAGCGAGAGCTGGGTTTCCCTCAAGCGGATGGAGACAATCCTCC
TCATGGAGGAGTACGAGCGAGAGCTGGGTTTCCCTCAAGCGGATGGAGAC
AATCCTCCTCATGGAGGAGAACGAGATCCTCACGGCCCCGCTCCGAGAGT
TCGACCTCGCGGTCAAGCCGCAGGAAGGGCCGCCGCCCAAGCTCCTCGCC
GTCGTCCCCGTGCTCGTCTCCCCGGCGCCGATAGGGCTAGGCTCCACCGC
CTCACCCCCTGGTCCTCTCCCCAACCTTTCCGGCGAGGCTGCTCCTGTCC
CACCACCGACGAGAACGAGATCCTCACGGCCCCGCTCCGAGAGTTCGACC
TCGCGGTCAAGCCGCAGGAAGGGCCGCCGCCCAAGCTCCTCGCCGTCGTC
CCCGTGCTCGTCTCCCCGGCGCCGATAGGGCTAGGCTCCACCGCCTCACC
CCCTGGTCCTCTCCCCAACCTTTCCGGCGAGGCTGCTCCTGTCCCACCAC
CGAC
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