mRNA_L-elsbetiae_contig11532.1346.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11532.1346.1
Unique NamemRNA_L-elsbetiae_contig11532.1346.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11532.1346.1 vs. uniprot
Match: D7G3C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C7_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.170e-16
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 AWHEFEVAHGNEETFREMLRTKRSVQMSFSQVNYMAAEMMS 123
            AWHEFEVAHGNEETFREMLRTK SVQMSFSQVNYMAAEMMS
Sbjct:  160 AWHEFEVAHGNEETFREMLRTKLSVQMSFSQVNYMAAEMMS 200
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BLAST of mRNA_L-elsbetiae_contig11532.1346.1 vs. uniprot
Match: A0A836CMJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.300e-14
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 AWHEFEVAHGNEETFREMLRTKRSVQMSFSQVNYMAAEMM 120
            AWH+FEVAHGNEETFREMLR KRSV MSFS VNYMAAEMM
Sbjct:   57 AWHDFEVAHGNEETFREMLRVKRSVAMSFSAVNYMAAEMM 96
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BLAST of mRNA_L-elsbetiae_contig11532.1346.1 vs. uniprot
Match: B8C032_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C032_THAPS)

HSP 1 Score: 68.6 bits (166), Expect = 2.350e-12
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 AWHEFEVAHGNEETFREMLRTKRSVQMSFSQVNYMAAEMMSRRP 132
            AWHEFEV+HGNEETFREMLR KRSVQ +FS VNY AAEM S  P
Sbjct:  677 AWHEFEVSHGNEETFREMLRVKRSVQAAFSTVNYNAAEMGSGAP 720
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BLAST of mRNA_L-elsbetiae_contig11532.1346.1 vs. uniprot
Match: A0A7S3XMF3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMF3_HETAK)

HSP 1 Score: 67.4 bits (163), Expect = 3.530e-12
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    4 WHEFEVAHGNEETFREMLRTKRSVQMSFSQVNYMAAEMMS 123
            WHEFEV+ GNEETFREMLR KRSVQ +F+QVNYMAAEM S
Sbjct:   69 WHEFEVSFGNEETFREMLRVKRSVQTAFAQVNYMAAEMAS 108
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BLAST of mRNA_L-elsbetiae_contig11532.1346.1 vs. uniprot
Match: A0A7S1ZRG7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRG7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.530e-11
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 AWHEFEVAHGNEETFREMLRTKRSVQMSFSQVNYMAAEM 117
            AWH+FEVAHGNEETFREMLR KR VQ +FS VNY AAEM
Sbjct:  850 AWHDFEVAHGNEETFREMLRVKRGVQAAFSTVNYNAAEM 888
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BLAST of mRNA_L-elsbetiae_contig11532.1346.1 vs. uniprot
Match: A0A7S1GNN3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNN3_CYCTE)

HSP 1 Score: 65.5 bits (158), Expect = 1.910e-11
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 AWHEFEVAHGNEETFREMLRTKRSVQMSFSQVNYMAAEM 117
            AWHEFEVAHGNEETFREMLR KRSVQ SFS VNY A  M
Sbjct:   92 AWHEFEVAHGNEETFREMLRIKRSVQASFSTVNYNATGM 130
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BLAST of mRNA_L-elsbetiae_contig11532.1346.1 vs. uniprot
Match: A0A7S2UKD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKD3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.850e-11
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    4 WHEFEVAHGNEETFREMLRTKRSVQMSFSQVNYMAAEM 117
            WHEFEVAHGNEETFREMLR KR +Q +FS VNY AAEM
Sbjct:  349 WHEFEVAHGNEETFREMLRVKRGIQAAFSTVNYNAAEM 386
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BLAST of mRNA_L-elsbetiae_contig11532.1346.1 vs. uniprot
Match: K0SYC6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SYC6_THAOC)

HSP 1 Score: 65.5 bits (158), Expect = 2.870e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 AWHEFEVAHGNEETFREMLRTKRSVQMSFSQVNYMAAEM 117
            AWHEFEV+HGNEETFREMLR KRSVQ +FS VNY AA++
Sbjct:  426 AWHEFEVSHGNEETFREMLRVKRSVQAAFSTVNYNAADL 464
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BLAST of mRNA_L-elsbetiae_contig11532.1346.1 vs. uniprot
Match: A0A7S4AXB5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AXB5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.310e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 AWHEFEVAHGNEETFREMLRTKRSVQMSFSQVNYMAAEM 117
            AW+EFE++HGNEETFREMLR KRSV+ SFS VNY AAEM
Sbjct:  816 AWNEFEISHGNEETFREMLRIKRSVEASFSTVNYNAAEM 854
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BLAST of mRNA_L-elsbetiae_contig11532.1346.1 vs. uniprot
Match: A0A448ZQ10_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQ10_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.310e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 AWHEFEVAHGNEETFREMLRTKRSVQMSFSQVNYMAAEM 117
            AW+EFE++HGNEETFREMLR KRSV+ SFS VNY AAEM
Sbjct:  809 AWNEFEISHGNEETFREMLRIKRSVEASFSTVNYNAAEM 847
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11532.1346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C7_ECTSI2.170e-1697.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMJ5_9STRA2.300e-1490.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B8C032_THAPS2.350e-1279.55Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3XMF3_HETAK3.530e-1282.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1ZRG7_9STRA1.530e-1182.05Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1GNN3_CYCTE1.910e-1184.62Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2UKD3_9STRA2.850e-1181.58Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
K0SYC6_THAOC2.870e-1179.49Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4AXB5_9STRA7.310e-1179.49Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448ZQ10_9STRA7.310e-1179.49Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11532contigL-elsbetiae_contig11532:33..1082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.2e-13
Seed eggNOG ortholog2880.D7G3C7
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG2047@1,KOG2047@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons2
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.9603662-CDS-L-elsbetiae_contig11532:32..711622815359.9603662-CDS-L-elsbetiae_contig11532:32..71Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11532 33..71 -
1691682859.91494-CDS-L-elsbetiae_contig11532:32..711691682859.91494-CDS-L-elsbetiae_contig11532:32..71Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11532 33..71 -
1622815360.0800123-CDS-L-elsbetiae_contig11532:989..10821622815360.0800123-CDS-L-elsbetiae_contig11532:989..1082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11532 990..1082 -
1691682859.9287152-CDS-L-elsbetiae_contig11532:989..10821691682859.9287152-CDS-L-elsbetiae_contig11532:989..1082Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11532 990..1082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11532.1346.1prot_L-elsbetiae_contig11532.1346.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11532 33..1082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11532.1346.1

>prot_L-elsbetiae_contig11532.1346.1 ID=prot_L-elsbetiae_contig11532.1346.1|Name=mRNA_L-elsbetiae_contig11532.1346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=44bp
AWHEFEVAHGNEETFREMLRTKRSVQMSFSQVNYMAAEMMSRRP
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mRNA from alignment at L-elsbetiae_contig11532:33..1082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11532.1346.1 ID=mRNA_L-elsbetiae_contig11532.1346.1|Name=mRNA_L-elsbetiae_contig11532.1346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig11532:33..1082- (Laminarionema elsbetiae ELsaHSoW15)
GCGTGGCACGAGTTCGAGGTGGCCCACGGCAACGAGGAGACCTTCCGGGA
GATGCTCAGAACCAAGCGTTCTGTGCAGATGTCATTCAGTCAGGTGCGTT
AAAAAATATCCCCCCCCCCCCCTCCCTGTGTGCAAAAAGAAGCACAGGCC
CTCCCGGTTGTGTTTTGGAATATTTACGCGCGTGGGAAAAAGGAGAGAGA
ATATGAGGGGCACAGGTAGGTGACCACACACCCTTGCTGGTATTGATTGA
TTCACGCTCCCTACTGCACATGCCCGTATGTAGCGATGGTCATGCTGTGT
CTGTGCAGATGCCTCTTCCTTCCCTTCCCGGCCTTGTTGCCCCCCCCCCC
CCGATAGGATTCCTGCAATAGAGCCAGCCCCCAATTCTCAGAAAGAGCTG
CGGGGGCAGCGGGGGGGGGGGGGGGGGGGGGGTTTGTTTTAAAAAAAAAG
GGAAAAAACCCCCCCCCGCAACTTTTTCAAAAAAAAGGGGCCCCGGGCAG
GAGCCCAAAANNNNNNNNNNCCTCCCCCCCCCCCCGCCCTCGGTCCCCCC
CCCCCCCTGGGAGCTTCCCCGCATGAGCGCCCCCCCCCAAGCCAGAGAAA
GGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTATTTGTTTAAGA
AATAGAGTGAAAAATCCCCCCACGGCAACTTTTTCAGAATAAGGGGCCCT
GCGGCAGGAAGCCTATAACCCGCTCTCGGCCGGAATGGCGGAGCGGGATC
GCGGAATGTAGATGGGGACGTTTTGGAGACTTGATCGATCCCCTGTAAAT
GACCCCTCCGGTCGTTCTTTCGCCTGCCGCGGCCGCCGTCTTGGCAGAGT
TCGAGTGCGTGTCCATTACCGCCAAACGGCCCAGGGCGCAGTAGCCAAAG
CAAGGGGCAACAGAGGCCAACCCCCCTATCCCCCCTTATTCACACCCCCG
CGCCCCCTCGCCTGCTGGAATGGCCCTCTTTTTTTTTTTCTTTTTTTTTT
TTCTATTGCAGGTCAACTACATGGCGGCCGAGATGATGTCGCGGCGGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11532:33..1082-

>mRNA_L-elsbetiae_contig11532.1346.1 ID=mRNA_L-elsbetiae_contig11532.1346.1|Name=mRNA_L-elsbetiae_contig11532.1346.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig11532:33..1082- (Laminarionema elsbetiae ELsaHSoW15)
GCGTGGCACGAGTTCGAGGTGGCCCACGGCAACGAGGAGACCTTCCGGGA
GATGCTCAGAACCAAGCGTTCTGTGCAGATGTCATTCAGTCAGGCGTGGC
ACGAGTTCGAGGTGGCCCACGGCAACGAGGAGACCTTCCGGGAGATGCTC
AGAACCAAGCGTTCTGTGCAGATGTCATTCAGTCAGGTCAACTACATGGC
GGCCGAGATGATGTCGCGGCGGCCCGTCAACTACATGGCGGCCGAGATGA
TGTCGCGGCGGCCC
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