mRNA_L-elsbetiae_contig1153.1343.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1153.1343.1 vs. uniprot
Match: A0A6H5KXM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM5_9PHAE) HSP 1 Score: 292 bits (747), Expect = 6.640e-80 Identity = 430/820 (52.44%), Postives = 476/820 (58.05%), Query Frame = 1
Query: 388 VEQARQRLRQATAVCAAAETGYWA-QPHLNGEPLVAGTFSQYRERLQKEKQVLTVEVLKRLGLQWVGPTDGLTAKRSGET--------GSKLLPS---------SRMHFKVQVPPPLTTGAVLS--VSDQQRQH-HHARDLQHE-SGGGVWVGSEGDGQLLGRRSPC--GDEVGNQLNVRFLGSERGRQSPPMP---------------QQPKNRAPQHQSCDAAATATATTAVQHDTTEWGGRSRCPNTENEGPD-AAAVTPIPGGAGASGGGCGSRTFSHQLSERTPPHSXXXXXXXXXXXXXXASWRQLKKLDHHPRQISPSLVAALPAVVVESGPXXXXXXXXXXXXXXRH----PHKRMRKVQTEDDSDVGISVNN--VGAGRGSYYAYNGSPLM--VPGSGASSR----CTSLSPSPPLPRLGLYLGSPLVDSASXXXXXXXXXXXXXXXXAANKCSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVLGLRNGHMSXXXXXXXXXXXXXXXX----VGSKRPRTAVEQARA------SMPTATKAVH------GPSATTQGSGGGEV--------GGRRSSTGTRQRTDKSKEGGTAGAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSKEMVNVRHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAMAGQRAMXXXXXXXXXXXXXXXXXXNFEEGCDRHPSFGWKHADGKARRCAHHRLEGMESVKVNNRRGGA 2619
+EQAR++LRQATAVCA+ ETGYW + +NG+ A TFSQYRERL +EK LT EVL LGLQWV P+ G + RS + G LLP + VPP G S V ++Q++ A Q E S GVWV + Q R P +E Q V +ERG ++ QQPK+ ++ TA + GGRSR NTENE P AAAVTP G G+ G + XXXXXXXXXXXXXX PR+ISPSLV+ LPAV+VE+GP XXX P+KR RK E+ D + + V G G Y + GSP M V S ASSR T SP+ G Y + + S + XXXXXXXXXXXXXXXXXVRVLGLRNGH SXXXXXXXXXX VGSKR R + E+ ++ S+P A K V GP T G G V GGRR STG RQR D+SKE GT APKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRS EMVNVRHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAMAGQRAMXXXXXXXXXXXXXXXXXX FE GCDRHPSFGWK DGKARRCAHHRLEGMESVKVNNRRG A
Sbjct: 5 MEQAREKLRQATAVCASVETGYWQHRSGINGKS--AATFSQYRERLVEEKHALTGEVLSHLGLQWVAPSHGASPSRSAASTAGEPPAAGKLLLPRPPFPRPAAVDNRFQRASVPPLAAAGGRSSRVVDEEQKERSREAGSAQREPSSRGVWVEED---QFSPRMRPAYENNEKDAQEQVIVSAAERGYEAXXXXXXXXXXXXXXRXXXXQQPKDHLQHPDLATQYGDSSGATA------DLGGRSRLWNTENEVPSPAAAVTPAAAGRGSDGVVGDNGALVSPPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPREISPSLVSTLPAVLVETGPLPPLTGTAAADXXXXXXAPLPYKRTRKTSAEEHQDFMNAAGSAAVTTGVGPYRPFLGSPEMAAVAVSEASSRGSFSSTGSSPALQHNHHGFYPAT--AAGGDFPASSAAADPDHIPFRRVSITSTTSHDWEQQHEMRQPRAGDVDGGXXXXXXXXXXXXXXXXXVRVLGLRNGHASXXXXXXXXXXEPSTSSDAVVVGSKRFRDSFEEIQSPLPLQMSLPPAVKIVRPGGGAVGPPTTMTRHGRGGVAPNGTAGGGGRRPSTGMRQRVDRSKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNRRGSA 811
BLAST of mRNA_L-elsbetiae_contig1153.1343.1 vs. uniprot
Match: D8LBU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBU9_ECTSI) HSP 1 Score: 150 bits (379), Expect = 2.460e-34 Identity = 157/342 (45.91%), Postives = 176/342 (51.46%), Query Frame = 1
Query: 1222 PRQISPSLVAALPAVVVESGPXXXXXXXXXXXXXXRHPHKRMRKVQTEDDSDVGISVNN--VGAGRGSYYAYNGSPLM--VPGSGASSR----CTSLSPSPPLPRLGLYLGSPLVDSASXXXXXXXXXXXXXXXXAANKCSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVLGLRNGHMSXXXXXXXXXXXXXXXX----VGSKRPRTAVEQARA--------SMPTATKAVH------GP--SATTQGSGGGEVGG------RRSSTGTRQRTDKSKEGGTAGAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSKEMVNVRHPL 2145
PRQISPSLV+ LPAV+VE+GP P+KR RK E+ D + + V G G Y+ + GSP M V S ASSR T SP+ G Y + S + S + XXXXXXXXXXXXXXXXX RVLGLRNGH XXXXXXX GSKR R A E+++A S+P A K V GP + T G GGG G RR STG RQR D+SKE GT APKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRS EMVNVRHPL
Sbjct: 161 PRQISPSLVSTLPAVLVETGPLPPLAGAGAPP-----PYKRTRKTSAEEHQDFMNAAGSAAVTTGVGPYHPFLGSPEMAAVAVSEASSRGSFSSTGSSPALQHNHHGFYPATAAGGDFSASSAAADPDHIPFRRVSIT--STTSHDWEQQREMRQPRAGDVDGGXXXXXXXXXXXXXXXXXXRVLGLRNGHAXXXXXXXXAATEPLTSSDAVVAGSKRFRDAFEESQAPLPPPLQMSLPPAVKIVRPGGGAVGPPTTMTRHGRGGGAPNGTAGXXGRRPSTGMRQRVDRSKETGTTVAPKGAQACRDVGCHRRPIYAFKGDTKALCCPIHRSAEMVNVRHPL 495
BLAST of mRNA_L-elsbetiae_contig1153.1343.1 vs. uniprot
Match: D8LBV0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV0_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 5.370e-20 Identity = 67/72 (93.06%), Postives = 67/72 (93.06%), Query Frame = 1
Query: 2404 LYAMAGQRAMXXXXXXXXXXXXXXXXXXNFEEGCDRHPSFGWKHADGKARRCAHHRLEGMESVKVNNRRGGA 2619
LYAMAGQRAMXXXXXXXXXXXXXXXXXX FE GCDRHPSFGWK DGKARRCAHHRLEGMESVKVNNRRG A
Sbjct: 57 LYAMAGQRAMXXXXXXXXXXXXXXXXXXXFEGGCDRHPSFGWKQGDGKARRCAHHRLEGMESVKVNNRRGSA 128 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1153.1343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1153.1343.1 >prot_L-elsbetiae_contig1153.1343.1 ID=prot_L-elsbetiae_contig1153.1343.1|Name=mRNA_L-elsbetiae_contig1153.1343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=775bp MMALRGSMHRVRQTDGCDVEQARQRLRQATAVCAAAETGYWAQPHLNGEPback to top mRNA from alignment at L-elsbetiae_contig1153:9926..18293- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1153.1343.1 ID=mRNA_L-elsbetiae_contig1153.1343.1|Name=mRNA_L-elsbetiae_contig1153.1343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8368bp|location=Sequence derived from alignment at L-elsbetiae_contig1153:9926..18293- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1153:9926..18293- >mRNA_L-elsbetiae_contig1153.1343.1 ID=mRNA_L-elsbetiae_contig1153.1343.1|Name=mRNA_L-elsbetiae_contig1153.1343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4650bp|location=Sequence derived from alignment at L-elsbetiae_contig1153:9926..18293- (Laminarionema elsbetiae ELsaHSoW15)back to top |