mRNA_L-elsbetiae_contig11519.1332.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11519.1332.1
Unique NamemRNA_L-elsbetiae_contig11519.1332.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11519.1332.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.040e-11
Identity = 42/123 (34.15%), Postives = 50/123 (40.65%), Query Frame = 3 
Query:   75 FGIDQIEMCNAVDLPDGPDSPSTQSCLNKYPLDRAEDD-------------------------------------------------------------TESSCTH*GFAEFNPPWWPSSCVP 260
            +G  ++ +C+A DLPDGPDS  TQSC N+YPLDRAEDD                                                             T +SC H G+AEFNPP WPSSC P
Sbjct:   96 WGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAP 218
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BLAST of mRNA_L-elsbetiae_contig11519.1332.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.110e-11
Identity = 42/123 (34.15%), Postives = 50/123 (40.65%), Query Frame = 3 
Query:   75 FGIDQIEMCNAVDLPDGPDSPSTQSCLNKYPLDRAEDD-------------------------------------------------------------TESSCTH*GFAEFNPPWWPSSCVP 260
            +G  ++ +C+A DLPDGPDS  TQSC N+YPLDRAEDD                                                             T +SC H G+AEFNPP WPSSC P
Sbjct:  145 WGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAP 267
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BLAST of mRNA_L-elsbetiae_contig11519.1332.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.000e-10
Identity = 39/123 (31.71%), Postives = 49/123 (39.84%), Query Frame = 3 
Query:   75 FGIDQIEMCNAVDLPDGPDSPSTQSCLNKYPLDRAEDD-------------------------------------------------------------TESSCTH*GFAEFNPPWWPSSCVP 260
            +G  ++ +CNA +LP GPDS  TQSC N++PLDRA+DD                                                             T +SC H G+AEFNPP WPSSC P
Sbjct:  148 WGHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAP 270
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BLAST of mRNA_L-elsbetiae_contig11519.1332.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.140e-6
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 3 
Query:   75 FGIDQIEMCNAVDLPDGPDSPSTQSCLNKYPLDRAEDDTESSCTH*GFAEFNPP 236
            +G  ++ +C+A DLPDGPDS  TQSC N++PLDRAEDD           EFN P
Sbjct:  116 WGHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDD-----------EFNGP 158
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BLAST of mRNA_L-elsbetiae_contig11519.1332.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 2.660e-5
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 3 
Query:   75 FGIDQIEMCNAVDLPDGPDSPSTQSCLNKYPLDRAEDDTESSCTH*GFAEFNPPWWPSS 251
            +G  ++ +C+A DLP GPDS  TQSC N++PLDR +DD           +FN P  PS+
Sbjct:  147 WGHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDD-----------DFNSPIDPSN 194
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BLAST of mRNA_L-elsbetiae_contig11519.1332.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 9.400e-5
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:   75 FGIDQIEMCNAVDLPDGPDSPSTQSCLNKYPLDRAEDD 188
            +G  ++ +C+A DLP GPDS  TQSC N++PLDR +DD
Sbjct:  147 WGHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDD 184
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11519.1332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FP25_ECTSI1.040e-1134.15EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI1.110e-1134.15EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM93_ECTSI3.000e-1031.71EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KD35_9PHAE1.140e-651.85CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LM92_ECTSI2.660e-544.07EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KTY6_9PHAE9.400e-555.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11519contigL-elsbetiae_contig11519:1710..5977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size269
Cds size156
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11519.1332.1prot_L-elsbetiae_contig11519.1332.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11519 2414..5977 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.605705-UTR-L-elsbetiae_contig11519:1709..17921622815358.605705-UTR-L-elsbetiae_contig11519:1709..1792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11519 1710..1792 -
1691682859.1323369-UTR-L-elsbetiae_contig11519:1709..17921691682859.1323369-UTR-L-elsbetiae_contig11519:1709..1792Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11519 1710..1792 -
1622815358.6519415-UTR-L-elsbetiae_contig11519:2383..24131622815358.6519415-UTR-L-elsbetiae_contig11519:2383..2413Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11519 2384..2413 -
1691682859.1418116-UTR-L-elsbetiae_contig11519:2383..24131691682859.1418116-UTR-L-elsbetiae_contig11519:2383..2413Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11519 2384..2413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.6695669-CDS-L-elsbetiae_contig11519:2413..24861622815358.6695669-CDS-L-elsbetiae_contig11519:2413..2486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11519 2414..2486 -
1691682859.1498673-CDS-L-elsbetiae_contig11519:2413..24861691682859.1498673-CDS-L-elsbetiae_contig11519:2413..2486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11519 2414..2486 -
1622815358.6844158-CDS-L-elsbetiae_contig11519:5894..59771622815358.6844158-CDS-L-elsbetiae_contig11519:5894..5977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11519 5895..5977 -
1691682859.158086-CDS-L-elsbetiae_contig11519:5894..59771691682859.158086-CDS-L-elsbetiae_contig11519:5894..5977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11519 5895..5977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11519.1332.1

>prot_L-elsbetiae_contig11519.1332.1 ID=prot_L-elsbetiae_contig11519.1332.1|Name=mRNA_L-elsbetiae_contig11519.1332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
MPSENPGVRRGFGGCLVSENPTRNPSALTRLRCATLSTSPTARTARPLNP
A*
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mRNA from alignment at L-elsbetiae_contig11519:1710..5977-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11519.1332.1 ID=mRNA_L-elsbetiae_contig11519.1332.1|Name=mRNA_L-elsbetiae_contig11519.1332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4268bp|location=Sequence derived from alignment at L-elsbetiae_contig11519:1710..5977- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTTCAGAGAACCCAGGAGTGCGGCGCGGATTTGGGGGGTGCCTGGT
CAGCGAGAACCCGACACGGAACCCTTCGGCATTGTAGGTGGGCGTGGGAA
GCCTTGGTGTTCGATAGCTCTCTTTCATTTCCTCTACCTAGCGTGGTATC
TGGTTTTTCTAGCCTTATTTTATTTTACTTTCCGAGTGGTAAGTACCCTA
AGCAGTGCTGCTCGGTGTGGAAAAAAATATATATACAGCTGGCAATCTTG
ACTATGCCTCCGCGTGATTTTGAACGATGACGAGAATGCGTCGCAGACAG
AACCAATGCTTACGAAATTTGGCACGTAGACTACATGTATCATGAGGACC
TAGCACCGAAAGTGGCGCGTCGAAATACACGCAGCGGCAGTCAGGAGGGA
CGATTTTCTCATAAAAGTTGCCTTCGCGCGGCGGCTAAGGCTTAGCTTCC
CCCTCAATGGTTTAGGAAGGGTGCACTGGTATATCAAAGCAGGTGTTATG
AGGGTCGTTCAGCACTTGAAATTTTGCTGCAACACGCAGTATAAGCCCGA
AGATTCGTAATCGGCGCGACGCAATATTTGACTACAGCATTTTCCGCCGG
ATCTTTTTTTTGTATCGAACGAAGAGTGCATACGATATCCGCACAAATTC
ACAACTTGCTTCACGCCGATTGCGAGTTCTCGGCCTATACTGCGTGTTGC
AGCAACATTCGAACTGCTGAGAAACCCTCACAATACCCTCTTTGACATCC
AGTGCACCCTTCGTAAACCGTTCAGGGAGAAGCTTACGCTGTCGCGCAAC
CGCGACTTTTATGATAAATACGCCCCTCTCGTCTACTGCTGTGTGTATTT
CGGCGCACCACCTTGGGTGCGAACTCATAATAGTGTATATAGTTCATGTG
CAAAGTTTCAAGCGGATCTGTACTGTCGGCGACGCATTCTCGGGCTCGGG
GAAAATACAAGCGCCATTCGGCGGGGGGTTGCGCCGCACTTTTTTTGCCA
GCTATCTGCGGCACAACTGCGAAAGTTTGTTTCGTCGGGTTTGAGGGCAA
TAGGGGGAGGAACTTGACAAATCAGGTGTCATTGGACAGGAAAGGCAGAA
CTCTACGGCCGCAGCGCCTTAGATCTGTATATATTGTCGTCGCCGGGCCG
CACAGCAGCCGAAAGGGTGTTTCCGACTGGCGCCCCCTTAAACCGGCGCG
CAGCACTACTGTAAGACCTTCTGTTTTTTTTTAGTATTTTTTGCATAAAA
ACGTTCATGTTGACCCCCCCCTCCCTGCACACACGAAGCCCCAGAGTTTG
GGGGAGATAAATCAGTGTTAGTGTTCGTAGTTATTTGAATAGTTAGTTAT
AATGAGGAGCCCGGCAACGAAAATGGCGTCGTTGCGGAACGGGTTCCTAG
AATATAGCGGGTCGGATCTCGTGAAAAAAATCTGTGCTGAAGTTGGCTGA
AGCCTGAGTTTAAAACATGTGATGTTGATAGCGTCTGTGTGTGTGTGTGT
GTGTGTTTTTTTAGACCGCGTGTTTTACACCTTGTATGGTCGTTTCGGTG
CAGATCGCGACCGCCAAGGGCTTGAACGAAAGCGAAAAATAGGGCAGGCC
TGTTGGTACTTGCTGTGTCGTACACCGGGACGAGTTATTAAGCGCGGTGA
AGCGCAAAAAGTCGTGTTTGGATCTGCTGTGGCGGAACCTCGTCTTTTGA
ATTTGTGCGACGAGCTTAGCACGGACGAAAACAATTGATGGCTTCCGCGA
ATGCTGCATGCAAGACCGATCGAATACTCTCTGTCTCATTTCACACCTTC
ACCTTTTCGCCCTGTAAGGTGCAATATACATTCAATAACGACCCTCTCTT
CCTGCGGGCTGTTTCGGCCTCTCGGCTCTCAAGCAAAAAATATACGAACG
GCTTTGCTGCACGCATTCATCGTGGCTACCATCCAGCAGTCTGATTCCAT
TGCGCGTGTCACTGCCGGTGTCGGGCCAATTCTCTAGAGGTATGGCTTCA
CCCTGCGCCGAGAGCACGCTGCTGCTGTGTTGTGATGCGAATCTCCAGCG
GACCAAAAAAGAGGAGAGAGGGTTCGCGAGAGCGTGGCGGGGGGGATCAA
CTGACAAGTGGGATGCGCCGGGGGGGGGTCAACTGGAGATTTTGTCTCAC
ACCTCCAGCGCACAGCACACACACACACTTGTTGTTTGTATCGCACACAG
CTTAATGCAGTTACGAGGAGTCCGTACCCGGACTATGGGGCTCCGAATAC
CACAACCACTAGTAGGAATGTTCTGCCGCACGACAACAATGCCCCGCCTC
GGCGTGGCCACCGCGGTGACGCGGCTGCGTTTTCGATGTGCGTTTGTGCG
TGGGTGGGCTGTTGTTTGAGTAGCTGCTGTGGCCATAATCGGGTACGGGT
GGTGAGAACCGGGTACACATCCGAGGGCTGAATAGCCAGAATCGGGTGTA
CCCGGCGGAAATGCGGCCAGCATCGGGTATTGGGCGGGAACTTTCATTGG
TACATTGAATAGGGTGCCCGTTTTTGGCCGGGTACCGTTTGGGTATACAC
ATTTTTGGCCATTGTTCTCGAGTAGGTTTGAAACACAAAGTTCTCAAGAT
CCAAAGATGCCGCGCACCGCTCCTGCTGTGTTTTGACTATGTTCCTCCAA
GAGTCTTGCTGATAAGATGTGCTTAGCCGAAGACCCCGTCTTCAAAGACC
CCGAGCGCTCTTATAGCCGACCCTCGCTGCTATCTACCGCGCATTTTTGC
CAACGAACGAAATAGTATTTCTTTGTTTACACTTGGACTGGTTCAGCCGG
CCGCCCCGTTTATAGTGTTGTGCTCTCTGCTCTGCTAGCAACAAGTAGGA
GCACCAGAACTGATTGAGGCTCTTGGAAATCGCTCTGGTTTCCAAGCGTA
AACGTCGATTGTGCGGTGAGAGAAGTAGATGGGGAGAAAAGGTTCGTTTT
CGAGAGGTAGATGGAGCAAGAATACGGCGGGTTTTCGATGAGAGGGGACA
GATGGGACGAGAAAACGCCACTAAGTTTCGCTTCGAGCCTCTCTCTATTT
AGCAACATATCTCCGGAATTTGAAACGTGGGAAAAGAGTACCCTTACGTT
TTGCTTTTTTGTTTTCCGGCCCACCAGCGGCGAGTGCCGCTCGATCCCCG
GTGCAACAGGCTTTAAAGTATTTGGTACGATGTACCACTTGCTTAAGGCG
CACTGGCGCATCTGCAAAGACTGCTTTTACATGACGGTTGTATGGGTTGG
TTATTTAATGAACAACGCGGCGTGGTTGCGCAAGCATGCTTCACGCCCAC
CCGCGCATGGACTTGCCATGATTATTTTGTTGCGTCATGTTCACGTTGAC
AATGGGAGCTACCCTCATGTGGAAGGTGCGCGCAAGCTCCGTCCAAATGC
CGCTCGTACATACCCCTTACTTTCTGCACAGTTTGCTCAAATCGTGGAGC
ACATGTGAACCACCTGGGTGTTGTTTCCCTCTGTCTGGCAGGACCAGATT
GAGATGTGCAACGCTGTCGACCTCCCCGACGGCCCGGACAGCCCGTCCAC
TCAATCCTGCTTGAATAAGTACCCCCTCGACCGTGCGGAAGATGGTGAGT
TCAACGGCCCCATCGATCCCACCAACAGGAGCACTTCATTCTCGACCCCC
CTTGCCGAGCCGCCGATGCCAACCAGAAACTACTGCCGGGCGCCATCCCC
GGCGACGTGGCCACGGCTCGCTTCCAAATGTCCCCAAGTTCTCCACCTGC
GATCGCTATGTCGTGCACATGGCTTGCTGTAAGTTGATTCGCCATCCCCG
GCGACGTGGCCACGGCTCGCTTCCAAATGTCCCCAAGTTCTCCACCTGCG
ATCGCTATGTCGTGCACATGGCTTGCTGTAGGTTGATTCGCCATCCCCGG
CGACGTGGCCACAGCTCGCTTCCAAATGTCCCCAGGTTCTCCACCTGCGA
TCGCTGTGTCTGTCGTGCACATGGCTTCCTGTGAGTTGATTCGTGTTTGC
AGATTGTTTACCGGAGCCACGATGTATTCTTTTGGCACCCGGAGCGCACA
GTAGTTGCATTCCCACGACAATACTTCGTCGTGCTGTGTGTCTAACAATA
CGGAGGCCCGCACGATGTTCTATGAAGCACATACGAATGATCTCCCGACC
CCTCCTGCTTCTCTTCCTCCTTTACGACACGGCAGACACAGAGAGCTCGT
GCACGCACTAAGGGTTCGCCGAGTTCAACCCCCCTTGGTGGCCAAGCTCG
TGCGTCCCCCTGCACCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11519:1710..5977-

>mRNA_L-elsbetiae_contig11519.1332.1 ID=mRNA_L-elsbetiae_contig11519.1332.1|Name=mRNA_L-elsbetiae_contig11519.1332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig11519:1710..5977- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTTCAGAGAACCCAGGAGTGCGGCGCGGATTTGGGGGGTGCCTGGT
CAGCGAGAACCCGACACGGAACCCTTCGGCATTATGCCTTCAGAGAACCC
AGGAGTGCGGCGCGGATTTGGGGGGTGCCTGGTCAGCGAGAACCCGACAC
GGAACCCTTCGGCATTGACCAGATTGAGATGTGCAACGCTGTCGACCTCC
CCGACGGCCCGGACAGCCCGTCCACTCAATCCTGCTTGAGACCAGATTGA
GATGTGCAACGCTGTCGACCTCCCCGACGGCCCGGACAGCCCGTCCACTC
AATCCTGCTTGA
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