mRNA_L-elsbetiae_contig11517.1331.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11517.1331.1
Unique NamemRNA_L-elsbetiae_contig11517.1331.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11517.1331.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 8.560e-14
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 AVVFSKGVLFLDDCDFSESTAPVLVLSKGQIPVIRNAVLGSGNYLEEGYMERKQEPTKRTRLRNAGPLINVNVTCDG 231
            AVVF +G+L+LDDCDFS STA VLV S+     +RNAVLG  NY +       +  +    +  A PL+NV+VTCDG
Sbjct:  747 AVVFCEGILYLDDCDFSGSTASVLVQSEENFTTVRNAVLGDNNYFDVA-----KAASTANEIPTAEPLMNVDVTCDG 818
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BLAST of mRNA_L-elsbetiae_contig11517.1331.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 7.540e-13
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 AVVFSKGVLFLDDCDFSESTAPVLVLSKGQ-IPVIRNAVLGSGNYLEEGYMERKQEPTKRTRLRNAGPLINVNVTCDG 231
            AVVFS+G L+LD+C+FS STA VLV S+G    V+RNAVLG  NY +       +  +    +  A  LINVNVTCDG
Sbjct:  309 AVVFSEGTLYLDECNFSGSTASVLVYSEGDSTTVVRNAVLGDNNYFDVA-----KAASTANEIPTAHSLINVNVTCDG 381
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BLAST of mRNA_L-elsbetiae_contig11517.1331.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.420e-12
Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:    1 AVVFSKGVLFLDDCDFSESTAPVLVLS-KGQIPVIRNAVLGSGNYLE--EGYMERKQEPTKRTRLRNAGPLINVNVTCDG 231
            AVVFS+G+L+LDDCDFS S A VLV S +    V+RNAVLG  NY +  E   E    PT  +       LI+VNVTCDG
Sbjct:  659 AVVFSEGILYLDDCDFSGSAASVLVYSERNSTTVVRNAVLGDNNYFDVAEAASEAGDIPTAHS-------LISVNVTCDG 731
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BLAST of mRNA_L-elsbetiae_contig11517.1331.1 vs. uniprot
Match: D7G5M2_ECTSI (Probable extracellular nuclease (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M2_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 4.830e-12
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 AVVFSKGVLFLDDCDFSESTAPVLVLSKGQIP-VIRNAVLGSGNYLEEGYMERKQEPTKRTRLRNAGPLINVNVTCDG 231
            AVVFS+G L+LDDC+FS S+A VLV S+G    V+RNAVLG  NY +       +  +    +  A  LINVNVTCDG
Sbjct:   43 AVVFSEGTLYLDDCNFSGSSASVLVYSEGNSSTVVRNAVLGDYNYFDVA-----EAASTANVIPTAHSLINVNVTCDG 115
[Close]
BLAST of mRNA_L-elsbetiae_contig11517.1331.1 vs. uniprot
Match: A0A6H5JH31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH31_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.120e-6
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 VVFSKGVLFLDDCDFSESTAPVLVLSKGQI-PVIRNAVLGSGN 129
            VVFS+G L+LD+C+FS STA VLV S+G +  V+RNAVLG  N
Sbjct:   33 VVFSEGTLYLDECNFSGSTASVLVYSEGDLNTVVRNAVLGDNN 75
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11517.1331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JRA9_9PHAE8.560e-1449.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0A8_ECTSI7.540e-1351.28Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7G0B0_ECTSI1.420e-1252.50Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G5M2_ECTSI4.830e-1251.28Probable extracellular nuclease (ISS) n=1 Tax=Ecto... [more]
A0A6H5JH31_9PHAE1.120e-662.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11517contigL-elsbetiae_contig11517:842..1707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.5669103-CDS-L-elsbetiae_contig11517:842..9611622815358.5669103-CDS-L-elsbetiae_contig11517:842..961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11517 843..961 -
1691682859.1108007-CDS-L-elsbetiae_contig11517:842..9611691682859.1108007-CDS-L-elsbetiae_contig11517:842..961Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11517 843..961 -
1622815358.5781639-CDS-L-elsbetiae_contig11517:1577..17071622815358.5781639-CDS-L-elsbetiae_contig11517:1577..1707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11517 1578..1707 -
1691682859.121669-CDS-L-elsbetiae_contig11517:1577..17071691682859.121669-CDS-L-elsbetiae_contig11517:1577..1707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11517 1578..1707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11517.1331.1prot_L-elsbetiae_contig11517.1331.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11517 843..1707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11517.1331.1

>prot_L-elsbetiae_contig11517.1331.1 ID=prot_L-elsbetiae_contig11517.1331.1|Name=mRNA_L-elsbetiae_contig11517.1331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
AVVFSKGVLFLDDCDFSESTAPVLVLSKGQIPVIRNAVLGSGNYLEEGYM
ERKQEPTKRTRLRNAGPLINVNVTCDGGNGGGG
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mRNA from alignment at L-elsbetiae_contig11517:842..1707-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11517.1331.1 ID=mRNA_L-elsbetiae_contig11517.1331.1|Name=mRNA_L-elsbetiae_contig11517.1331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=866bp|location=Sequence derived from alignment at L-elsbetiae_contig11517:842..1707- (Laminarionema elsbetiae ELsaHSoW15)
GCGGTTGTCTTCAGCAAGGGCGTGCTGTTCCTGGACGACTGTGACTTCAG
CGAAAGTACCGCACCGGTGCTTGTGCTTTCGAAGGGGCAGATCCCGGTCA
TCCGGAACGCCGTCCTCGGAAGCGGCAACTGTGAGCAATGAGACGAGCGA
TGTTCTATACACGAGGAGCATCGCACCCTTTCGGGCATGCCGTTGGGATA
CAGAAGGGGGTTCCGGTTGCACCACATGTTGAACTGCATACCTCAAACTC
TGCCGGGGCTGTGGGTGCACGTCCACTGCGACCTCGCTTTCCGATTGGAT
TCGATGGACATTCAGGGATGATACTCTCTCGTTCATGGTGCTAGCCGCGT
TGTGGAAGACGCCATACCCTCACTTTCGTTTTTTGCGTTGGGGTGTGGCT
CTAACCCTACCCTGCTTCATGCAGCCTACTTGCTCACCCCAAACGGACCC
AAGATACACGTAACATCCACACCACGCACCCCGAAATTGCTCGCGTTCTT
AGTCTTTGGTCTGTAAAACTTGAATCGGAAGAGCTTGATGTGCGCTTGGG
CAACCCTACCTCTCGAAAAACAGCGCATGTGACCAAGACAAGAGCTCGTT
TCCCGCCGATCCCCACCCAAATGCCCGAATACCTCTCCTGTTTCTCGTTC
CGCGGTATGTTGCATCAATTTTCCCCTGCATGAATGCTCGCCGTTTTGTT
TGCGTCGCCCAACAACGAACGTGCCGTCATGGCTTCGGCCTCCCAGATTT
GGAGGAAGGATACATGGAGCGAAAGCAAGAACCAACCAAACGAACAAGGT
TACGAAACGCGGGGCCGTTGATTAACGTGAACGTAACTTGCGACGGGGGG
AACGGAGGAGGAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11517:842..1707-

>mRNA_L-elsbetiae_contig11517.1331.1 ID=mRNA_L-elsbetiae_contig11517.1331.1|Name=mRNA_L-elsbetiae_contig11517.1331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig11517:842..1707- (Laminarionema elsbetiae ELsaHSoW15)
GCGGTTGTCTTCAGCAAGGGCGTGCTGTTCCTGGACGACTGTGACTTCAG
CGAAAGTACCGCACCGGTGCTTGTGCTTTCGAAGGGGCAGATCCCGGTCA
TCCGGAACGCCGTCCTCGGAAGCGGCAACTGCGGTTGTCTTCAGCAAGGG
CGTGCTGTTCCTGGACGACTGTGACTTCAGCGAAAGTACCGCACCGGTGC
TTGTGCTTTCGAAGGGGCAGATCCCGGTCATCCGGAACGCCGTCCTCGGA
AGCGGCAACTATTTGGAGGAAGGATACATGGAGCGAAAGCAAGAACCAAC
CAAACGAACAAGGTTACGAAACGCGGGGCCGTTGATTAACGTGAACGTAA
CTTGCGACGGGGGGAACGGAGGAGGAGGCATTTGGAGGAAGGATACATGG
AGCGAAAGCAAGAACCAACCAAACGAACAAGGTTACGAAACGCGGGGCCG
TTGATTAACGTGAACGTAACTTGCGACGGGGGGAACGGAGGAGGAGGC
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