mRNA_L-elsbetiae_contig11510.1328.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11510.1328.1
Unique NamemRNA_L-elsbetiae_contig11510.1328.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11510.1328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11510contigL-elsbetiae_contig11510:122..2756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1105
Cds size801
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.3124113-CDS-L-elsbetiae_contig11510:121..2621622815358.3124113-CDS-L-elsbetiae_contig11510:121..262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11510 122..262 -
1691682858.9141655-CDS-L-elsbetiae_contig11510:121..2621691682858.9141655-CDS-L-elsbetiae_contig11510:121..262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11510 122..262 -
1622815358.323408-CDS-L-elsbetiae_contig11510:930..10231622815358.323408-CDS-L-elsbetiae_contig11510:930..1023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11510 931..1023 -
1691682858.9265532-CDS-L-elsbetiae_contig11510:930..10231691682858.9265532-CDS-L-elsbetiae_contig11510:930..1023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11510 931..1023 -
1622815358.3353992-CDS-L-elsbetiae_contig11510:1252..14201622815358.3353992-CDS-L-elsbetiae_contig11510:1252..1420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11510 1253..1420 -
1691682858.9349997-CDS-L-elsbetiae_contig11510:1252..14201691682858.9349997-CDS-L-elsbetiae_contig11510:1252..1420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11510 1253..1420 -
1622815358.3497794-CDS-L-elsbetiae_contig11510:1623..18571622815358.3497794-CDS-L-elsbetiae_contig11510:1623..1857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11510 1624..1857 -
1691682858.944594-CDS-L-elsbetiae_contig11510:1623..18571691682858.944594-CDS-L-elsbetiae_contig11510:1623..1857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11510 1624..1857 -
1622815358.360527-CDS-L-elsbetiae_contig11510:2080..22451622815358.360527-CDS-L-elsbetiae_contig11510:2080..2245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11510 2081..2245 -
1691682858.955111-CDS-L-elsbetiae_contig11510:2080..22451691682858.955111-CDS-L-elsbetiae_contig11510:2080..2245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11510 2081..2245 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.3693166-UTR-L-elsbetiae_contig11510:2245..22571622815358.3693166-UTR-L-elsbetiae_contig11510:2245..2257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11510 2246..2257 -
1691682858.9709876-UTR-L-elsbetiae_contig11510:2245..22571691682858.9709876-UTR-L-elsbetiae_contig11510:2245..2257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11510 2246..2257 -
1622815358.3817139-UTR-L-elsbetiae_contig11510:2464..27561622815358.3817139-UTR-L-elsbetiae_contig11510:2464..2756Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11510 2465..2756 -
1691682858.9895337-UTR-L-elsbetiae_contig11510:2464..27561691682858.9895337-UTR-L-elsbetiae_contig11510:2464..2756Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11510 2465..2756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11510.1328.1prot_L-elsbetiae_contig11510.1328.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11510 122..2245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11510.1328.1

>prot_L-elsbetiae_contig11510.1328.1 ID=prot_L-elsbetiae_contig11510.1328.1|Name=mRNA_L-elsbetiae_contig11510.1328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=267bp
MNTAAATDAGEGRSELLPAVVEGEEDEDAETLQEEPSEVAAAAPAESLRL
GNNSLETGQELRSASASSSVPAAMGVSPAESGAHPASYPSPESAASPGEA
RVAAHRTAFAALLRLSPAHLQRRVKTIHFTGDEDELTCLTILRRLRGTWG
YIPFLRKARRARVISKKRKHALDASALKAASDSLENGSKNTFEVLAELFY
LVDNLPSSRDLRNALKRGSRNQHRGQSAQEFRFRVFDKVQEWMDLPQFRP
RRERTRRDGGITGQQGA
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mRNA from alignment at L-elsbetiae_contig11510:122..2756-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11510.1328.1 ID=mRNA_L-elsbetiae_contig11510.1328.1|Name=mRNA_L-elsbetiae_contig11510.1328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2635bp|location=Sequence derived from alignment at L-elsbetiae_contig11510:122..2756- (Laminarionema elsbetiae ELsaHSoW15)
GCTGTAACCCCGCTTGACGTCCTTGACTTGGCATCGCTAAGGCTACTGTC
GTCTGAAGCTAGGATGTCTTAGTGTTGAACTGGGTAATTTATTTTTTATC
AAGTCAGACACAACATGGTACTGAAGTCGCTCAACGTTAGGTTGACCACT
TTGTTTTCCTCTTTTCTCCCACGCGTTTGCATCTCCTGCGCTTGGCCCGA
TTCAATGCAGCCATCTGGTCATCGGTAGCGGCAGCAGCAGCGGCAGCAGC
AGCAGTGCCAGCGCTGGGGCTGCCGACAGCAACACACCTACGGTAAGAGT
GGAATTACTTAGCTTGGGTGCTTTCGCAGGTAGCTGCGTATCTAATATCC
TGTCCGGGATGTGCCTGCTTTGCAGAGGGGTCCTTTGACGCTAGGAACAG
CTTGTCCTCGTATCTCGCGGCAAGTGACATTTTGAAAATCAACAGTGCGG
TCTACATACATACTTCGTATACATTTACTTGTTTGGACTTGCTTTCCAGG
TTTCCAATGAGATGAATACTGCGGCAGCAACCGACGCGGGGGAGGGGCGG
AGTGAGCTGCTGCCTGCGGTGGTGGAGGGCGAGGAGGACGAGGACGCGGA
AACGCTCCAGGAGGAACCTAGCGAGGTGGCAGCAGCAGCGCCAGCAGAGT
CTCTCAGGCTTGGAAACAACTCTCTGGTGAGGCGTGTTGACTGAAAAACA
TCGCGCGCTTTTCATTGCGAAGAGAGAGAGCACACGTGTGGTGTGCGTGT
GCGCCTCAGGGTCGAGGTAAACTCTACAACAGTAGTAGTGTAAAATATAT
TTTCGCTGCAAGCTACCATGCATCAATTACTTTTAAAACGAAATGCTTTT
CTCAACCCCTCTCCTTTCCTCCCCTCCTCTTCCCTTGTTTTGCATGCAGG
AGACTGGGCAAGAGCTGCGTTCGGCGAGTGCCTCATCTTCCGTTCCTGCC
GCCATGGGTGTTTCTCCTGCTGAATCGGGTGCCCATCCCGCGTCTTACCC
CTCCCCGGAAAGTGCCGCCAGCCCGGGAGAGGCCCGTGTGGCTGCCCACC
GCACGGCTTTTGCCGCCCTGCTGAGACTTAGCCCTGCCCACCTGCAGAGA
CGGGTGAAGACGATACATTTCACCGGCGACGAGGTGAGTTAACGGTCCGG
CGTAAGCGAGTTGATGGAACGGAGATAGGAAAGGAAGGACACATAATATG
TGCATTGTATCCATGCGTCTAGCCATGCTCGCCTTGAATCAACGCCTCTA
TGGTGCCTTCGTGAAGGGTGCAGCAGCATCCTGACATTATATAACTCCCC
TCACGGCCAATAATGTGTTTTTCAACGACATATCAGGACGAGCTCACGTG
CCTGACCATTCTGAGGAGGCTGCGGGGAACGTGGGGTTACATCCCTTTTC
TGCGGAAAGCGAGGAGAGCACGAGTCATCTCCAAGAAACGAAAGCATGCC
CTTGACGCATCTGCGTTGAAGGCCGCGAGCGACAGCCTGGAGAATGGCAG
CAAGGTTATTGAGCTTGTTTGTGCGCGCGGTTTGTACCAGTTCTTAGGGC
CTCATTAACCCTCGAGGCTGAAAACAGTATTCAGCACTGCCGCGTCAGGC
GTTGTTTCCTCTGCCTAGCACACCATGTGTCATCAGGCAACCCGGTTCGG
GTGTTCCTGCGGGCCCCCAGTACACTTAATTCATAAGAGACTGCCGAATC
TAAACACCACATTTCTGCCAATGAAACAAGCAGAACACCTTCGAAGTGCT
CGCAGAGCTGTTCTACCTGGTCGACAATTTGCCTTCTTCCAGAGACCTCC
GCAATGCCCTCAAAAGGGGGTCAAGGGTGAGTTCGCAAAATAATGTGCTC
ATGTGCGAGGAGTCAGCTTTTCGTTAAACGTTCAGTTCAACCCAGTGCGT
TTAGATCTGTTTAAATGCACTTACTGACTGCGTTTGCGCTCTCCACGAAG
AACAACAGTCATCCATATCCAACTACATATTATGGTCCGTCCGCCACAAC
TTTTTCACAAGCTCGACCTGCACTTCTGTAGGGTGGGGAGGCTTTTCCGA
AATTCAAAGATACCGGCAAACGCGCTGTCTCCAGGTGCGTCTTTCTACGG
AAAGCGGTTTTTATTTTTTCGTTTCATCTTGGTCGCAATCACAAAAAAAA
ACAGGAAAAGTGTGTTCGCTCTTTCCTGCGACTTTCACCTGTACGATATT
AAATTGGACCAAGGCAAAGGATTCCTCTCGAAATTCCTCCGCAGTGTAGT
AGTTTTTCCCGATTTTTGATTGATAGCATATAGTTCGTGAGATATTCGGC
TTCGTCCCAAACCCAGATTTTTCCCCGGTCTTAAAAACTTTTTCGGCCAC
ACAATAACTTGAACTTAGTGTGGAGGTGTCCAAAAGGTTTTGGAAATGAT
TTTTCAGAAAAACAGAAACAACCCCCCCTGATGCTCTGAGCCGCTTTCGT
GATAACGGTTCTCCTCTTGTGTGTGTTATATCGCGTCTGTGCAGAACCAG
CATCGCGGCCAGAGTGCGCAGGAATTCCGCTTCAGGGTCTTCGACAAAGT
CCAAGAGTGGATGGACCTCCCCCAGTTTCGCCCAAGGCGTGAGCGTACCA
GGCGAGACGGCGGCATCACGGGGCAGCAAGGAGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11510:122..2756-

>mRNA_L-elsbetiae_contig11510.1328.1 ID=mRNA_L-elsbetiae_contig11510.1328.1|Name=mRNA_L-elsbetiae_contig11510.1328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig11510:122..2756- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATACTGCGGCAGCAACCGACGCGGGGGAGGGGCGGAGTGAGCTGCT
GCCTGCGGTGGTGGAGGGCGAGGAGGACGAGGACGCGGAAACGCTCCAGG
AGGAACCTAGCGAGGTGGCAGCAGCAGCGCCAGCAGAGTCTCTCAGGCTT
GGAAACAACTCTCTGATGAATACTGCGGCAGCAACCGACGCGGGGGAGGG
GCGGAGTGAGCTGCTGCCTGCGGTGGTGGAGGGCGAGGAGGACGAGGACG
CGGAAACGCTCCAGGAGGAACCTAGCGAGGTGGCAGCAGCAGCGCCAGCA
GAGTCTCTCAGGCTTGGAAACAACTCTCTGGAGACTGGGCAAGAGCTGCG
TTCGGCGAGTGCCTCATCTTCCGTTCCTGCCGCCATGGGTGTTTCTCCTG
CTGAATCGGGTGCCCATCCCGCGTCTTACCCCTCCCCGGAAAGTGCCGCC
AGCCCGGGAGAGGCCCGTGTGGCTGCCCACCGCACGGCTTTTGCCGCCCT
GCTGAGACTTAGCCCTGCCCACCTGCAGAGACGGGTGAAGACGATACATT
TCACCGGCGACGAGGAGACTGGGCAAGAGCTGCGTTCGGCGAGTGCCTCA
TCTTCCGTTCCTGCCGCCATGGGTGTTTCTCCTGCTGAATCGGGTGCCCA
TCCCGCGTCTTACCCCTCCCCGGAAAGTGCCGCCAGCCCGGGAGAGGCCC
GTGTGGCTGCCCACCGCACGGCTTTTGCCGCCCTGCTGAGACTTAGCCCT
GCCCACCTGCAGAGACGGGTGAAGACGATACATTTCACCGGCGACGAGGA
CGAGCTCACGTGCCTGACCATTCTGAGGAGGCTGCGGGGAACGTGGGGTT
ACATCCCTTTTCTGCGGAAAGCGAGGAGAGCACGAGTCATCTCCAAGAAA
CGAAAGCATGCCCTTGACGCATCTGCGTTGAAGGCCGCGAGCGACAGCCT
GGAGAATGGCAGCAAGGACGAGCTCACGTGCCTGACCATTCTGAGGAGGC
TGCGGGGAACGTGGGGTTACATCCCTTTTCTGCGGAAAGCGAGGAGAGCA
CGAGTCATCTCCAAGAAACGAAAGCATGCCCTTGACGCATCTGCGTTGAA
GGCCGCGAGCGACAGCCTGGAGAATGGCAGCAAGAACACCTTCGAAGTGC
TCGCAGAGCTGTTCTACCTGGTCGACAATTTGCCTTCTTCCAGAGACCTC
CGCAATGCCCTCAAAAGGGGGTCAAGGAACACCTTCGAAGTGCTCGCAGA
GCTGTTCTACCTGGTCGACAATTTGCCTTCTTCCAGAGACCTCCGCAATG
CCCTCAAAAGGGGGTCAAGGAACCAGCATCGCGGCCAGAGTGCGCAGGAA
TTCCGCTTCAGGGTCTTCGACAAAGTCCAAGAGTGGATGGACCTCCCCCA
GTTTCGCCCAAGGCGTGAGCGTACCAGGCGAGACGGCGGCATCACGGGGC
AGCAAGGAGCTAACCAGCATCGCGGCCAGAGTGCGCAGGAATTCCGCTTC
AGGGTCTTCGACAAAGTCCAAGAGTGGATGGACCTCCCCCAGTTTCGCCC
AAGGCGTGAGCGTACCAGGCGAGACGGCGGCATCACGGGGCAGCAAGGAG
CT
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