mRNA_L-elsbetiae_contig11505.1325.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11505.1325.1
Unique NamemRNA_L-elsbetiae_contig11505.1325.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11505.1325.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.980e-7
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 2 
Query:    2 RRRGYLAMCRAHPSRV-QLGQEIRSEDAGVAPRARSRARSCNGRA-----------GDDWAVM-ARVLELQEEGIFRTIVGYL 211
            RRRGYL MCRA P RV +      +    VA R RSRA+    R            G +WAV+ ++V+ LQEEGIFRTIV YL
Sbjct:  318 RRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARARGIAGESTVDESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400
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BLAST of mRNA_L-elsbetiae_contig11505.1325.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.930e-5
Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 2 
Query:    2 RRRGYLAMCRAHPSRVQLGQEIRSED-AGVAPRARSRAR---------SCN-----GRAGDDW-AVMARVLELQEEGIFRTIVGYL 211
            RRRG L +CRA   R +L QE   +   G++ R RSRA+          C      G  GD+W +   RV+EL+EEGIFR++VG+L
Sbjct:  337 RRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRRGTPEGGTGDEWRSASKRVVELEEEGIFRSVVGFL 422
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11505.1325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXK5_9PHAE1.980e-746.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYD0_ECTSI2.930e-541.86Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11505contigL-elsbetiae_contig11505:1684..2356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size307
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11505.1325.1prot_L-elsbetiae_contig11505.1325.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11505 1706..2356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.0125368-UTR-L-elsbetiae_contig11505:1683..17051622815358.0125368-UTR-L-elsbetiae_contig11505:1683..1705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11505 1684..1705 +
1691682858.7696116-UTR-L-elsbetiae_contig11505:1683..17051691682858.7696116-UTR-L-elsbetiae_contig11505:1683..1705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11505 1684..1705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.061998-CDS-L-elsbetiae_contig11505:1705..19031622815358.061998-CDS-L-elsbetiae_contig11505:1705..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11505 1706..1903 +
1691682858.7792182-CDS-L-elsbetiae_contig11505:1705..19031691682858.7792182-CDS-L-elsbetiae_contig11505:1705..1903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11505 1706..1903 +
1622815358.07282-CDS-L-elsbetiae_contig11505:2269..23561622815358.07282-CDS-L-elsbetiae_contig11505:2269..2356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11505 2270..2356 +
1691682858.7877104-CDS-L-elsbetiae_contig11505:2269..23561691682858.7877104-CDS-L-elsbetiae_contig11505:2269..2356Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11505 2270..2356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11505.1325.1

>prot_L-elsbetiae_contig11505.1325.1 ID=prot_L-elsbetiae_contig11505.1325.1|Name=mRNA_L-elsbetiae_contig11505.1325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MCRAHPSRVQLGQEIRSEDAGVAPRARSRARSCNGRAGDDWAVMARVLEL
QEEGIFRTIVGYLVKPLFRNAVTSHIIMIRAPDLREKKGHEPDD*
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mRNA from alignment at L-elsbetiae_contig11505:1684..2356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11505.1325.1 ID=mRNA_L-elsbetiae_contig11505.1325.1|Name=mRNA_L-elsbetiae_contig11505.1325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=673bp|location=Sequence derived from alignment at L-elsbetiae_contig11505:1684..2356+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTCGCCGGGGCTACCTGGCAATGTGCCGCGCTCACCCTAGCAGAGTGC
AGCTGGGACAGGAGATCCGCAGCGAGGACGCCGGTGTGGCACCCAGGGCT
CGCAGCCGGGCAAGAAGTTGCAATGGTAGGGCTGGTGATGACTGGGCTGT
GATGGCGCGGGTGCTGGAACTGCAGGAAGAGGGCATTTTCAGGACGATTG
TGGGGTATCTTGTGAAACCGGTGAGAGCTAAACTCGCGCAGCCATCATAG
CCATCACACGCACAGTATCTAGTATGCATATACCGAGCCAGTGTTTTTCT
GTGCTTGTGACGAGGCCAGTTGATGAGTGTCGCCATATGTACTATACTGT
TTTATGTAGTTAATAGTTCTTGTTTTATTGGTCTGTATCTTGAAGTGCCC
GCTTTCGATGCGCGCTTCTGATTTGACTCACCTATCCGCACGGCGGAGCT
GGTGTGGAATTACTCTGTGGTGTTTGGGCCGCACTCCCACACCACCACGC
TCTGTGTGCCCCATGTAGCATCAATCAACAACATTTCCTAACCTCTCCAT
TTCTGCCCTCCCTCGTGCCCACCTAACGTAGGATAGCTCTTCCGGAATGC
GGTAACCTCCCATATCATCATGATAAGGGCTCCTGATCTACGAGAGAAAA
AGGGCCATGAGCCAGATGATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11505:1684..2356+

>mRNA_L-elsbetiae_contig11505.1325.1 ID=mRNA_L-elsbetiae_contig11505.1325.1|Name=mRNA_L-elsbetiae_contig11505.1325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig11505:1684..2356+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCCGCGCTCACCCTAGCAGAGTGCAGCTGGGACAGGAGATCCGCAG
CGAGGACGCCGGTGTGGCACCCAGGGCTCGCAGCCGGGCAAGAAGTTGCA
ATGGTAGGGCTGGTGATGACTGGGCTGTGATGGCGCGGGTGCTGGAACTG
CAGGAAGAGGGCATTTTCAGGACGATTGTGGGGTATCTTGTGAAACCGAT
GTGCCGCGCTCACCCTAGCAGAGTGCAGCTGGGACAGGAGATCCGCAGCG
AGGACGCCGGTGTGGCACCCAGGGCTCGCAGCCGGGCAAGAAGTTGCAAT
GGTAGGGCTGGTGATGACTGGGCTGTGATGGCGCGGGTGCTGGAACTGCA
GGAAGAGGGCATTTTCAGGACGATTGTGGGGTATCTTGTGAAACCGCTCT
TCCGGAATGCGGTAACCTCCCATATCATCATGATAAGGGCTCCTGATCTA
CGAGAGAAAAAGGGCCATGAGCCAGATGATTGACTCTTCCGGAATGCGGT
AACCTCCCATATCATCATGATAAGGGCTCCTGATCTACGAGAGAAAAAGG
GCCATGAGCCAGATGATTGA
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