mRNA_L-elsbetiae_contig11503.1322.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11503.1322.1
Unique NamemRNA_L-elsbetiae_contig11503.1322.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11503.1322.1 vs. uniprot
Match: A0A6H5JER7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER7_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 2.400e-89
Identity = 161/257 (62.65%), Postives = 181/257 (70.43%), Query Frame = 1 
Query:   52 ASRKRSVPLPRGSHGKSLVWSKDGKRLLAGVNTNILLLLEYPGDDRESSSDRRVGAVSPRGRSVSPQQQRRRTQGTSSSPGLESPG-------------GKKPSVRRLVRGHSGSVMALAVFEGVHEYVTAGYDRSVAVWSAASHLPIAWCSNLPSPVSCLACSPDLAEVAVGTSGTNEILFLKVHREGARRVDPASPAREAEGGGEDRATAGDPSNAAATWIELLHSKQLLPASAWSKRRQPGLNSRWVTTSPSWD 783
            +S + S PLPR +H KSLVWSKDG RLL G+NTN+LLLLEYP DDRE+SSDRRV AVSPRGRS             ++ P  +S G              KKPSV RLV+GHSGSVMALAVFEGV EYVTAGYDRSVA+W+ AS+LP+AWC NLPSP+SCLACSPDL EVAVGT  TNEI FLKVHR   +R DP           E+R  + D  N AAT IEL HSKQLLP SAW+KRR PG N+RW TT PSWD
Sbjct:  206 SSARTSPPLPRANHCKSLVWSKDGTRLLTGLNTNVLLLLEYPADDRETSSDRRVVAVSPRGRSGH----------QNTGPAFDSDGFKLSKNPVDGDGRSKKPSVTRLVQGHSGSVMALAVFEGVPEYVTAGYDRSVAIWNTASNLPMAWCHNLPSPISCLACSPDLEEVAVGTVTTNEIFFLKVHR-ARQRPDPTQ---------EEREWSDDSGNNAATGIELRHSKQLLPDSAWAKRRPPGPNARWNTTKPSWD 442
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BLAST of mRNA_L-elsbetiae_contig11503.1322.1 vs. uniprot
Match: D7G7I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I2_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 1.760e-86
Identity = 162/251 (64.54%), Postives = 180/251 (71.71%), Query Frame = 1 
Query:   55 SRKRSVPLPRGSHGKSLVWSKDGKRLLAGVNTNILLLLEYPGDDRESSSDRRVGAVSPRGRSVSPQQQRRRTQGTSSSPGLESPGG--------KKPSVRRLVRGHSGSVMALAVFEGVHEYVTAGYDRSVAVWSAASHLPIAWCSNLPSPVSCLACSPDLAEVAVGTSGTNEILFLKVHREGARRVDPASPAREAEGGGEDRATAGDPSNAAATWIELLHSKQLLPASAWSKRRQPGLNSRWVTTSPSWD 783
            S + S PLPRGSH KSLVWSKDG RLL G+NTN+LLLLEYP DDRE+SSDRRV AVSPRGRS         T     S G ++           KKPS+ RLV+GHSGSVMALAVFEGV EYVTAGYDRSVA+W+ AS+LP+AWC NLPSP+SCLACSPDL E+AVGT  TNEI FLKVHR    R  P  P +E E G  D      P N AAT +EL HSKQLLP SAW+KRR PG N+RW TT PSWD
Sbjct: 1051 STRTSPPLPRGSHCKSLVWSKDGMRLLTGLNTNVLLLLEYPADDRETSSDRRVVAVSPRGRSA-----HENTGPVFDSDGFKNSNNPVHGDGWSKKPSLTRLVQGHSGSVMALAVFEGVPEYVTAGYDRSVAIWNTASNLPVAWCHNLPSPISCLACSPDLEEIAVGTVNTNEIFFLKVHR---ARQSP-DPTQEEERGWGDA-----PGNNAATGMELRHSKQLLPDSAWAKRRPPGPNARWNTTKPSWD 1287
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11503.1322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JER7_9PHAE2.400e-8962.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I2_ECTSI1.760e-8664.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11503contigL-elsbetiae_contig11503:2693..6060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.1
Seed ortholog evalue3.9e-78
Seed eggNOG ortholog2880.D7G7I2
KEGG koko:K18598
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-02_000380.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons5
Model size783
Cds size783
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11503.1322.1prot_L-elsbetiae_contig11503.1322.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11503 2693..6060 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815357.7542753-CDS-L-elsbetiae_contig11503:2692..27361622815357.7542753-CDS-L-elsbetiae_contig11503:2692..2736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11503 2693..2736 +
1691682858.6428928-CDS-L-elsbetiae_contig11503:2692..27361691682858.6428928-CDS-L-elsbetiae_contig11503:2692..2736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11503 2693..2736 +
1622815357.764522-CDS-L-elsbetiae_contig11503:3019..31631622815357.764522-CDS-L-elsbetiae_contig11503:3019..3163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11503 3020..3163 +
1691682858.6555374-CDS-L-elsbetiae_contig11503:3019..31631691682858.6555374-CDS-L-elsbetiae_contig11503:3019..3163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11503 3020..3163 +
1622815357.7747507-CDS-L-elsbetiae_contig11503:4075..43031622815357.7747507-CDS-L-elsbetiae_contig11503:4075..4303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11503 4076..4303 +
1691682858.6655185-CDS-L-elsbetiae_contig11503:4075..43031691682858.6655185-CDS-L-elsbetiae_contig11503:4075..4303Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11503 4076..4303 +
1622815357.7867856-CDS-L-elsbetiae_contig11503:5236..54421622815357.7867856-CDS-L-elsbetiae_contig11503:5236..5442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11503 5237..5442 +
1691682858.6753361-CDS-L-elsbetiae_contig11503:5236..54421691682858.6753361-CDS-L-elsbetiae_contig11503:5236..5442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11503 5237..5442 +
1622815357.802049-CDS-L-elsbetiae_contig11503:5899..60601622815357.802049-CDS-L-elsbetiae_contig11503:5899..6060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11503 5900..6060 +
1691682858.6845617-CDS-L-elsbetiae_contig11503:5899..60601691682858.6845617-CDS-L-elsbetiae_contig11503:5899..6060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11503 5900..6060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11503.1322.1

>prot_L-elsbetiae_contig11503.1322.1 ID=prot_L-elsbetiae_contig11503.1322.1|Name=mRNA_L-elsbetiae_contig11503.1322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=261bp
GEGWAAGGGREPTAQDRASRKRSVPLPRGSHGKSLVWSKDGKRLLAGVNT
NILLLLEYPGDDRESSSDRRVGAVSPRGRSVSPQQQRRRTQGTSSSPGLE
SPGGKKPSVRRLVRGHSGSVMALAVFEGVHEYVTAGYDRSVAVWSAASHL
PIAWCSNLPSPVSCLACSPDLAEVAVGTSGTNEILFLKVHREGARRVDPA
SPAREAEGGGEDRATAGDPSNAAATWIELLHSKQLLPASAWSKRRQPGLN
SRWVTTSPSWD
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mRNA from alignment at L-elsbetiae_contig11503:2693..6060+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11503.1322.1 ID=mRNA_L-elsbetiae_contig11503.1322.1|Name=mRNA_L-elsbetiae_contig11503.1322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3368bp|location=Sequence derived from alignment at L-elsbetiae_contig11503:2693..6060+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGGGCTGGGCTGCCGGGGGGGGGCGGGAACCGACAGCGCAAGGGGG
GGGGGGGCGAGGTACGGCAGGCCGGCCAGCGACGCGGGCGTAGAAAAGAT
CTCGAGTCTGGTTATGTCGGCAGCGCCGGTTCAACCGAGCTCCATGTACA
TAGGGATATTATCTCCTCAATGCTGTCTCACTTGAACAAGTGTATTCGAG
ACGCTCTCCACAAGATCCGGTGTTGAGGCTTGTCAAAACCGTTTTGAAAG
AAAAAAAGAAAAAAAAGAGCCTCGTTGAGACACTCCCTCCCCCCCGGAAA
TCGTCGCCGCTGCCCGTCGCGAACGGCAGATCGGGCTTCGCGGAAACGGT
CGGTTCCGCTCCCGCGAGGGAGTCACGGCAAGAGCCTCGTGTGGTCGAAG
GACGGTAAGCGGCTGCTGGCGGGCGTCAACACCAACATCTTGTTGCTCCT
CGAGTACCCCGGGGACGACAGGTGCGTCGTTCTGTGTTGGACGCCTCCTC
TTCTCCCTGTGTTGGACGCCTCCTTATACTTCTATATTTTACCGGCAGTT
AATAAAACACTTTCCGCTAAGAAAAACACCTGCAAGGAGTGGAGGGGGAG
TTTCAAAAACGACTTGATTTTTTGCGTCATAAACCGATGGAAATTGTACG
GTTTTGTGGGCGGTGTCCGAAGAAGGCGGGCTAAAATACGACGGCAACCT
TGAGACGACAACACGGGGGTTGGCAGTGCACGCCTTGAGGGGTGGTGCTG
CCGTCCGCCTGTCCATTTTGTGCCGCGTTGACGCACGCATATGGGCTCAA
GGGCGTCTGTCTGCTGTGCTGCTGCTAATCTCACTCACCTCCGTTCCCTG
TCTATCACACCCAATACCCACCCTGCATACCGTAATATCCCCTGAGAACG
CCCCGGCGTGTATCTACCGTAGGTGACACAAGATACCACACCCCTTGGGC
AGATTTTGAAAGCTCGATCCCTCCCCAGCAAGAAGAGTGCCAGTACCGAA
AGGGGTGGCGTTGGAAATATCTATTTAGTCGAGGGCTGTCCGAAAATGTG
CCATTTGGTGCCGGCACCCTCTTCGTTACGGAGTAATGGAGCACTAAAAT
TCGGTTCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAAACATGTCTCA
AATCCGATTTTCTCCACAACCGAGAGGGTACAATGAACAAGAACGTTTAA
AACTTGGAAAGATCTTTTACGAGATGCTTTCCAAGGGCGCATCGCTCGAC
AAACAAATAGCAACTCACCCATTGTGGAGAAAATAAAATTGGCTTTTTGA
AAAATTGCTTACACCCCGGGGCGTTCTCAAGGGATATATCACGGTGGTAT
GTTCCCCCGACGCACGCACACACGCCGGCGCAGAGAGTCTTCCTCCGACC
GACGGGTGGGGGCCGTCTCTCCCAGGGGAAGAAGCGTTTCGCCGCAGCAG
CAGCGCCGCCGAACCCAGGGCACCAGCAGTAGCCCCGGCCTTGAGAGCCC
GGGAGGGAAGAAGCCGTCGGTGAGGCGCCTGGTGCGAGGCCACTCCGGGA
GCGTGATGGCTCTGGCCGTGTTCGAAGGGGTGCACGAGTACGTCACCGCC
GGATACGACAGGTATTGTTGTGTGACCCCGGTGGGGTTCGTCTAGCTAGT
CGCAGTGGAGTATGGGGGCCAGTGGGGGCAGACGACGAGTATGCCAATAA
TGGGAGGAGAAAAACAAATTGAAGTTGTGGCGTAAACTTTGTATTTAGCG
TTGAATACAGCCCCACGAGCAGGACTGCCACTCGCTCTGACGAGCCCTGC
TTCCGATTCAGGGCCTGGGGTTTGTGGAGGGCCGGGGGCTAGGGGGGCGG
GGTTGTGGGGTACTGCAGGCCGCGACACAACAGTTCCAGCGAGAACGTCG
TATGTAACACCAGCATCGATTGATTCAACGTTCGGGTGGCCGTCTGGACC
ATCTTCTGAAAAGAAATCAAGAAAATCGATGGCGGAACTTCCACTGCTGG
GGGCCGGCACTCTGTCAAAGCATGGTACTCCGTCGCTCGAGCAACAGTAA
AATAATGTGGCACTGTTTCGGCCGAGTTAAAAAAACAAAATACGAAACGA
CTTCGAAACCCACGCGCATTTCTGCCCAGATCAAGCAGCAAAGATATCGG
AGAGAAGCCCACCGTAATGCTCCTGTTCATACCCACGAAGGCGTGCAGGC
AACGTCGCCCCTTTCGCACGCCCGCCCCGCTTTGACTCCCGCAATTTCTA
CTCTCAATTCCGACCATTGCGGACCCCTTTGAGTCAATTTTATTTCTTTT
TTCTTTTTCAGCGTATTTACCCGCTTTAGGGTACGTTATCCTGTGGCCAC
GCCAATGGACTGCGCCAAGTGTTTGGGAATAGTACGGGCTTATAGAGGTA
CTGGATAGAGAGATCGGAACGATTTTTAATGTGAAGACGATGACGGCAAC
AACAACAACAACAACAACAACAACAACGGGACTGTCAAACAATCCCACCG
AACGCCTCGCCCCGCACCCCTCTGCCGGCCTCTTCTTCCTCCAGGTCTGT
GGCGGTCTGGAGCGCTGCTTCCCACCTCCCCATCGCATGGTGCAGCAACC
TCCCCAGCCCGGTCTCCTGCCTCGCGTGCAGCCCCGACCTGGCGGAGGTG
GCGGTGGGGACATCCGGAACCAACGAGATCCTGTTCTTGAAGGTCCACCG
GGAGGGGGCGCGGCGAGTGGACCCGGCGTCGCCGGCACGAGAAGCAGAAG
GTTTTTAACCCTGAGCCTAACCCTCACCCTAGCCCTGACCGCAACGCAAG
CCTTGACCCTAAGGCCAGCCTAAGCCCCACGCCGCCGGCATGAGCAGAAA
GAAACAAAAGTTTATGTGGAGACAGGCGCCTTGCTGGTGCCGGAGGTGGC
GGACGTGGTTGGTCCCTCGGCGTCCGAGCGGAAGTAGGGCAGGGCGGGGG
AGGGGGGCGGCGAAAGCGACTGCGTTTGACGTTCAGAGATTCAGCTCTTT
TATGCTGTCCCCGAAGATAAAGGTGCTTTTTTACTTTATTTCATGGCATT
GATGGATAGCAGCGAGCGGCACAGGGTTGGTTCGTCATGCCCGTCGCTGA
GCAACATATATATATACTTCTATGTATATAGATATATCCTTCTCCGCATA
AAATCCCACTCGTTTTCTTTGATATTTCCTCCTGTGCCTCTTCGATGCGC
GGTCAAGGCGGAGGAGAAGACCGGGCGACCGCAGGCGACCCCAGCAACGC
CGCTGCAACCTGGATCGAGCTGCTCCACTCGAAGCAGCTGCTGCCGGCCT
CGGCGTGGTCGAAGCGCCGGCAGCCGGGCCTCAACTCCCGCTGGGTCACC
ACCTCGCCGTCGTGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11503:2693..6060+

>mRNA_L-elsbetiae_contig11503.1322.1 ID=mRNA_L-elsbetiae_contig11503.1322.1|Name=mRNA_L-elsbetiae_contig11503.1322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1566bp|location=Sequence derived from alignment at L-elsbetiae_contig11503:2693..6060+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGAGGGCTGGGCTGCCGGGGGGGGGCGGGAACCGACAGCGCAGGAGAG
GGCTGGGCTGCCGGGGGGGGGCGGGAACCGACAGCGCAAGATCGGGCTTC
GCGGAAACGGTCGGTTCCGCTCCCGCGAGGGAGTCACGGCAAGAGCCTCG
TGTGGTCGAAGGACGGTAAGCGGCTGCTGGCGGGCGTCAACACCAACATC
TTGTTGCTCCTCGAGTACCCCGGGGACGACAGAGATCGGGCTTCGCGGAA
ACGGTCGGTTCCGCTCCCGCGAGGGAGTCACGGCAAGAGCCTCGTGTGGT
CGAAGGACGGTAAGCGGCTGCTGGCGGGCGTCAACACCAACATCTTGTTG
CTCCTCGAGTACCCCGGGGACGACAGAGAGTCTTCCTCCGACCGACGGGT
GGGGGCCGTCTCTCCCAGGGGAAGAAGCGTTTCGCCGCAGCAGCAGCGCC
GCCGAACCCAGGGCACCAGCAGTAGCCCCGGCCTTGAGAGCCCGGGAGGG
AAGAAGCCGTCGGTGAGGCGCCTGGTGCGAGGCCACTCCGGGAGCGTGAT
GGCTCTGGCCGTGTTCGAAGGGGTGCACGAGTACGTCACCGCCGGATACG
ACAGAGAGTCTTCCTCCGACCGACGGGTGGGGGCCGTCTCTCCCAGGGGA
AGAAGCGTTTCGCCGCAGCAGCAGCGCCGCCGAACCCAGGGCACCAGCAG
TAGCCCCGGCCTTGAGAGCCCGGGAGGGAAGAAGCCGTCGGTGAGGCGCC
TGGTGCGAGGCCACTCCGGGAGCGTGATGGCTCTGGCCGTGTTCGAAGGG
GTGCACGAGTACGTCACCGCCGGATACGACAGGTCTGTGGCGGTCTGGAG
CGCTGCTTCCCACCTCCCCATCGCATGGTGCAGCAACCTCCCCAGCCCGG
TCTCCTGCCTCGCGTGCAGCCCCGACCTGGCGGAGGTGGCGGTGGGGACA
TCCGGAACCAACGAGATCCTGTTCTTGAAGGTCCACCGGGAGGGGGCGCG
GCGAGTGGACCCGGCGTCGCCGGCACGAGAAGCAGAAGGTCTGTGGCGGT
CTGGAGCGCTGCTTCCCACCTCCCCATCGCATGGTGCAGCAACCTCCCCA
GCCCGGTCTCCTGCCTCGCGTGCAGCCCCGACCTGGCGGAGGTGGCGGTG
GGGACATCCGGAACCAACGAGATCCTGTTCTTGAAGGTCCACCGGGAGGG
GGCGCGGCGAGTGGACCCGGCGTCGCCGGCACGAGAAGCAGAAGGCGGAG
GAGAAGACCGGGCGACCGCAGGCGACCCCAGCAACGCCGCTGCAACCTGG
ATCGAGCTGCTCCACTCGAAGCAGCTGCTGCCGGCCTCGGCGTGGTCGAA
GCGCCGGCAGCCGGGCCTCAACTCCCGCTGGGTCACCACCTCGCCGTCGT
GGGACGCGGAGGAGAAGACCGGGCGACCGCAGGCGACCCCAGCAACGCCG
CTGCAACCTGGATCGAGCTGCTCCACTCGAAGCAGCTGCTGCCGGCCTCG
GCGTGGTCGAAGCGCCGGCAGCCGGGCCTCAACTCCCGCTGGGTCACCAC
CTCGCCGTCGTGGGAC
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