mRNA_L-elsbetiae_contig11500.1320.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11500.1320.1
Unique NamemRNA_L-elsbetiae_contig11500.1320.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11500.1320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11500contigL-elsbetiae_contig11500:3034..4048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size367
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11500.1320.1prot_L-elsbetiae_contig11500.1320.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11500 3071..4003 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815357.3710394-UTR-L-elsbetiae_contig11500:3033..30701622815357.3710394-UTR-L-elsbetiae_contig11500:3033..3070Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11500 3034..3070 -
1691682858.5780458-UTR-L-elsbetiae_contig11500:3033..30701691682858.5780458-UTR-L-elsbetiae_contig11500:3033..3070Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11500 3034..3070 -
1622815357.4094844-UTR-L-elsbetiae_contig11500:4003..40481622815357.4094844-UTR-L-elsbetiae_contig11500:4003..4048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11500 4004..4048 -
1691682858.613089-UTR-L-elsbetiae_contig11500:4003..40481691682858.613089-UTR-L-elsbetiae_contig11500:4003..4048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11500 4004..4048 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815357.3801587-CDS-L-elsbetiae_contig11500:3070..31391622815357.3801587-CDS-L-elsbetiae_contig11500:3070..3139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11500 3071..3139 -
1691682858.5865996-CDS-L-elsbetiae_contig11500:3070..31391691682858.5865996-CDS-L-elsbetiae_contig11500:3070..3139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11500 3071..3139 -
1622815357.3888159-CDS-L-elsbetiae_contig11500:3530..36511622815357.3888159-CDS-L-elsbetiae_contig11500:3530..3651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11500 3531..3651 -
1691682858.5977144-CDS-L-elsbetiae_contig11500:3530..36511691682858.5977144-CDS-L-elsbetiae_contig11500:3530..3651Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11500 3531..3651 -
1622815357.397798-CDS-L-elsbetiae_contig11500:3908..40031622815357.397798-CDS-L-elsbetiae_contig11500:3908..4003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11500 3909..4003 -
1691682858.6053247-CDS-L-elsbetiae_contig11500:3908..40031691682858.6053247-CDS-L-elsbetiae_contig11500:3908..4003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11500 3909..4003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11500.1320.1

>prot_L-elsbetiae_contig11500.1320.1 ID=prot_L-elsbetiae_contig11500.1320.1|Name=mRNA_L-elsbetiae_contig11500.1320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MPRRLRNANTHAFDLHDLQEEVIRPKAVTNATEEESVDAHRIYWAEGVKT
DDVNRKTINGTRQQSWRASKQKVKQISSHGRGSVDSYYEGGGAA*
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mRNA from alignment at L-elsbetiae_contig11500:3034..4048-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11500.1320.1 ID=mRNA_L-elsbetiae_contig11500.1320.1|Name=mRNA_L-elsbetiae_contig11500.1320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1015bp|location=Sequence derived from alignment at L-elsbetiae_contig11500:3034..4048- (Laminarionema elsbetiae ELsaHSoW15)
AGGCGGGAGCTGGCGAAGAAACTGCTCAAGAAAACCAAGGCCAAAATGCC
TCGGCGCCTTCGGAATGCCAACACGCATGCCTTCGACTTGCACGACCTGC
AAGAGGAGGTCATCCGCCCCAAGGCCGTCACCAACGCCACGTGAGAAAGT
CTAACCACTGTGGAAAGCACGCCGCATCCATGTGCCATTGCGATTCTCAC
GTCGTTCGTGCAAGATCTTCTTCGGGGCGCGGGCCCTAGACTTTAAGCCT
CTCTGGCATGCTTGCTTCTTCGGTCGCTCTATTTTGAATCAAAAACGTTT
GATGTCGGTCGATATTCTCCGACTCCGCATCCATGAATATCTTTACATGT
GTATGCTGGCCCCTCATACAACTGCATTGGACAAATTGACATCGCAGCGA
GGAGGAGAGTGTGGACGCTCACCGAATATACTGGGCGGAGGGGGTAAAAA
CTGATGATGTCAACCGCAAGACGATCAACGGTACCCGGCAGCAATCGTGG
CGGGCTTCGAAGCAAAAGGTGGGAAAATGTAACCTCAAACAACATTGAGA
GCACCTTTTCGACCTATCGACACACGAAGTGTTTTACACACCTTGGACTA
CGACCTACTACTCAATCATGCCGGCATCTAATTTCGACGGTCTTTGAAAA
CGTTGAGGGCAGCGAAGGCGCTCCTCGATCTGGGTGGCTGGCTGAATACT
GAAAGCATACTTCCAGAATATTCGCAAAACCCAGCACCAGAGTGAACAAG
TACGGCCGCTGCAGGAAGTTTATGCACCAAACGAATCGAATAGAGGCGGG
CTGAGCAGACAGTACCCATTTACTCAACGCATTCGTGTCGCGATCAAGGC
TTGGAGGTAAAACCAAGGTGTTTCGTCGACATCCTGTCCCCCTTTTCCTT
CCTCGCCAGGTCAAGCAGATATCATCCCATGGGCGGGGTTCGGTCGATTC
CTACTACGAAGGAGGAGGCGCTGCCTAGGGCCACAAGAAGATGAATATAG
ATCTCCAGGAGACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11500:3034..4048-

>mRNA_L-elsbetiae_contig11500.1320.1 ID=mRNA_L-elsbetiae_contig11500.1320.1|Name=mRNA_L-elsbetiae_contig11500.1320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig11500:3034..4048- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCGGCGCCTTCGGAATGCCAACACGCATGCCTTCGACTTGCACGA
CCTGCAAGAGGAGGTCATCCGCCCCAAGGCCGTCACCAACGCCACATGCC
TCGGCGCCTTCGGAATGCCAACACGCATGCCTTCGACTTGCACGACCTGC
AAGAGGAGGTCATCCGCCCCAAGGCCGTCACCAACGCCACCGAGGAGGAG
AGTGTGGACGCTCACCGAATATACTGGGCGGAGGGGGTAAAAACTGATGA
TGTCAACCGCAAGACGATCAACGGTACCCGGCAGCAATCGTGGCGGGCTT
CGAAGCAAAAGCGAGGAGGAGAGTGTGGACGCTCACCGAATATACTGGGC
GGAGGGGGTAAAAACTGATGATGTCAACCGCAAGACGATCAACGGTACCC
GGCAGCAATCGTGGCGGGCTTCGAAGCAAAAGGTCAAGCAGATATCATCC
CATGGGCGGGGTTCGGTCGATTCCTACTACGAAGGAGGAGGCGCTGCCTA
GGTCAAGCAGATATCATCCCATGGGCGGGGTTCGGTCGATTCCTACTACG
AAGGAGGAGGCGCTGCCTAG
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