mRNA_L-elsbetiae_contig1150.1319.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig1150.1319.1
Unique Name	mRNA_L-elsbetiae_contig1150.1319.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot
Match: D8LCR9_ECTSI (NF-X1 finger and helicase domain protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR9_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 2.710e-79
Identity = 139/240 (57.92%), Postives = 156/240 (65.00%), Query Frame = 2

Query:    2 QHGMYIIGNAG------------------MLESKAGTIWSESVIPTLRAKDAIGSTLALQCARHEDAVTMIRKHEEFASLAGDGGCSRVCSSRLPCGHTCVRRCHPDDPHHLGVRCSEPCPRLLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSCEASRRPASIRWVRLVRRWGRVATKMIPGCGHVVRGRCTATKAIVENPAECRNSCGKPLPCGHSCAEPCGRCTTLTLSE 667
            QHGMYIIGNAG                  MLESK GT+WSESVIP LR K AIG+TL LQCARH+D++T+I K+EEFASLAGDGGCSR CSSRLPCGH C+RRCHPDDPHHLGVRCSEPCPRLL+P   XXXX                          + C     P  + WVR + R G      +PGCGH ++GRCTAT+ IV NPA C  +CGKPLPCGHSCA  CG CT LTLS 
Sbjct: 1591 QHGMYIIGNAGESQESARRTKKFVILPFSMLESKRGTMWSESVIPILREKGAIGTTLELQCARHKDSITVIHKYEEFASLAGDGGCSRACSSRLPCGHACLRRCHPDDPHHLGVRCSEPCPRLLQPCEHXXXXLCGDECGPCYQRVDVVGLPCGHE---MLCP----PTLVVWVRSIDRCGEPVELKVPGCGHEIKGRCTATRDIVRNPAMCSETCGKPLPCGHSCAATCGSCTQLTLSR 1823

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BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot
Match: A0A6H5JXL6_9PHAE (AAA_12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXL6_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.360e-42
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 2

Query:    2 QHGMYIIGNAGMLESKAGTIWSESVIPTLRAKDAIGSTLALQCARHEDAVTMIRKHEEFASLAGDGGCSRVCSSRLPCGHTCVRR 256
            QHGMYIIGNAGMLESK GT+WSESVIPTLR K AIG+TL LQCARH+D++T+I K+EEFASLAGDGGCSR CSSRLPCGH C+RR
Sbjct:  173 QHGMYIIGNAGMLESKRGTMWSESVIPTLREKGAIGTTLELQCARHKDSITVIHKYEEFASLAGDGGCSRACSSRLPCGHACLRR 257

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BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot
Match: A0A388L1F4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L1F4_CHABU)

HSP 1 Score: 138 bits (347), Expect = 8.570e-34
Identity = 79/227 (34.80%), Postives = 112/227 (49.34%), Query Frame = 2

Query:    2 QHGMYIIGNAG-MLESKAGTIWSESVIPTLRAKDAIGSTLALQCARHEDAVTMIRKHEEFASLAGDGGCSRVCSSRLPCGHTCVRRCHPDDPHHLGVRCSEPCPRLLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSCEASRRPASIRWVRL----VRRWGRVATKMIPGCGHVVRGRCTATKAIVENPAECRNSCGKPLPCGHSCAEPCGRCTTLTLSE 667
            +HG+Y++GNA  ++ S+   +W + V+  L+ +D +G  L L+C +H + +T I   ++F  L GDGGCS +C  RLPCGH C RRCHPD+ +H+G RC +PCPRL                                    + C  + R     W  L    V     V   MI  CGH+++ +C   +     P  C   C  PLPCGH CA  CG+C TLTL +
Sbjct: 1458 KHGLYLVGNAATLIXSRNSKMWPQ-VLHMLK-EDKMGKKLPLKCEQHPERITHIEHAQDFEELVGDGGCSLLCGFRLPCGHQCPRRCHPDNRNHVGTRCLKPCPRLRP-----ASECKHQHPCRKVCGEVCGPCEVPVGPLVLPCGHTAREVPC-WKTLKLDQVXXXXMVEVGMIL-CGHILKVQCWQREWTRARPLLCPEKCKMPLPCGHDCAAGCGKCLTLTLQQ 1675

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BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot
Match: A0A1Y2GYA4_9FUNG (Uncharacterized protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GYA4_9FUNG)

HSP 1 Score: 122 bits (305), Expect = 3.520e-28
Identity = 76/215 (35.35%), Postives = 104/215 (48.37%), Query Frame = 2

Query:    2 QHGMYIIGNAGMLESKAGTIWSESVIPTLRAKDAIGSTLALQCARHEDAVTMIRKHEEFASLAGDGGCSRVCSSRLPCGHTCVRRCHPDDPHHLGVRCSEPCPRLLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSCEASRRPASIRWVRLVRRWGRVATKMIPGCGHVVRGRCTATKAIVENPAECRNSCGKPLPCGHSCAEPCGRC 646
            QHGMYIIGNAG++E+    IW + ++  L+  D IG    L C  H +A  ++ + + F  ++ +GGC+  C S +PCGH C   CHPDD  HL V+C E CPRL       XXXXX                          C  ++ P+ I  V  VR      T+ +P C H +   C    ++V   A C+ +    LPCGHSC  PC  C
Sbjct: 1313 QHGMYIIGNAGLMENAKKGIWPQ-IMRELQQYDRIGDGFPLVCKNHPEAQNIVTEPDGFKIVSPNGGCTLSCGSNMPCGHVCPLHCHPDDMEHLLVKCFEACPRLHPICQHVXXXXXGEKCGNCLEIVAPLVLPCGHIYEQPRCWEAKDPSKI--VCRVR-----VTRKLPTCEHEMTMECYRDPSLVSCAAPCKCN----LPCGHSCTRPCSEC 1515

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BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot
Match: UPI0020081487 (uncharacterized protein n=1 Tax=Daldinia caldariorum TaxID=326644 RepID=UPI0020081487)

HSP 1 Score: 119 bits (297), Expect = 4.100e-27
Identity = 73/220 (33.18%), Postives = 105/220 (47.73%), Query Frame = 2

Query:    2 QHGMYIIGNAGMLESKAGTIWSESVIPTLRAKDAIGSTLALQCARHE--DAVTMIRKHEEFASLAGDGGCSRVCSSRLPCGHTCVRRCHPDDPHHLGVRCSEPCPRLLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVS---CEASRRPASIRWVRLVRRWGRVATKMIPGCGHVVRGRCTATKAIVENPAECRNSCGKPLPCGHSCAEPCGRC 646
            QHGMY+IGNA         +W++ V+  L AK  +G+ L L C RH   D   ++ K ++F  +A +GGC   C  RLPCGH+C+ RCH ++ H+  V+C EPCPR  K                                  +S   C  ++ P+SI   ++V       +K++PGCGH V   C    ++  +  +CR SC  P PCGH C   C  C
Sbjct: 1192 QHGMYLIGNANTYRHVH--MWAK-VLEILGAKGNLGTQLELHCPRHPNPDTPLLVSKADDFLRVAPEGGCILQCDKRLPCGHSCINRCHHENLHNA-VKCLEPCPRPKKGCQHTCKLVCGEPCKPKCDEHLKNINITLACGHRISTALCWQAQDPSSIVCKQMV-------SKVVPGCGHTVEVPCHTDVSV--DTYKCRKSCLDPRPCGHDCQSSCYEC 1398

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BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot
Match: A0A397SKA8_9GLOM (Uncharacterized protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SKA8_9GLOM)

HSP 1 Score: 117 bits (293), Expect = 1.420e-26
Identity = 68/223 (30.49%), Postives = 104/223 (46.64%), Query Frame = 2

Query:    2 QHGMYIIGNAGMLESKAGTIWSESVIPTLRAKDAIGSTLALQCARHEDAVTMIRKHEEFASLAGDGGCSRVCSSRLPCGHTCVRRCHPDDPHHLGVR--CSEPCPRLLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSCEASRRPASIRWVRLVRRWGRVATKMIPGCGHVVRGRCTATKAIVENPAECRNSCGKPLP-CGHSCAEPCGRCTTLTL 661
            +HG++++GNA +L  ++  +W +SVI  +R +D IG +  +QC  H D +  I+   +F  L+ DGGCS  C  R+PCGH C  +CHPDDP H+G    C  PC +L                                      C  ++ P SIR   ++       T+ +P CGH  + RC ++   +E+   C N+CG  L  C H C   C  C   ++
Sbjct: 1415 KHGLFMLGNAELLSDRSD-MW-KSVINLMRERDQIGESFPIQCESHPDVINYIKNPNQFQELSPDGGCSLPCRYRMPCGHICSYKCHPDDPDHIGAAKACIRPCLKLHSHCNHVCPLPCGVPCGECEIVLEDILLSCGHYYPSPKCYQAQDPNSIRCTVMI-------TRTLPTCGHEQKARCGSS---IED-LRCENNCGIILEGCEHPCKNKCYECQKKSI 1624

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BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot
Match: A0A2I1GNP4_9GLOM (P-loop containing nucleoside triphosphate hydrolase protein n=12 Tax=Rhizophagus TaxID=1129544 RepID=A0A2I1GNP4_9GLOM)

HSP 1 Score: 115 bits (288), Expect = 6.590e-26
Identity = 65/225 (28.89%), Postives = 103/225 (45.78%), Query Frame = 2

Query:    2 QHGMYIIGNAGMLESKAGTIWSESVIPTLRAKDAIGSTLALQCARHEDAVTMIRKHEEFASLAGDGGCSRVCSSRLPCGHTCVRRCHPDDPHHLGVR--CSEPCPRLLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSCEASRRPASIRWVRLVRRWGRVATKMIPGCGHVVRGRCTATKAIVENPAECRNSCGKPLP-CGHSCAEPCGRCTTLTLSE 667
            +HG++++GNAG+L  ++  +W +SVI  +R ++ IG +  ++C  H D++  I+   +F  L+ DGGCS  C  R+PCGH C  +CHPDDP H+G    C  PC  L K                                    C  ++ P  I+   +V       T  +P CGH  +  C ++   +     C + CG  L  CGH C   C +C   ++ +
Sbjct: 1394 KHGLFMLGNAGLLSDRSD-MW-KSVINLMRERNQIGKSFPIRCESHPDSINYIKSPRQFQELSPDGGCSLPCLCRMPCGHNCAYKCHPDDPEHVGAAKACMRPCLELHKNCNHICPLPCGVPCGECEIVLEDILLPCGHNYPSPKCYQTQNPNLIKCTVMV-------TLTLPACGHEQKALCGSSIKDIS----CDHDCGIILEDCGHPCKNKCFQCQKKSIGK 1605

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BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot
Match: UPI00200804C9 (uncharacterized protein n=1 Tax=Annulohypoxylon maeteangense TaxID=1927788 RepID=UPI00200804C9)

HSP 1 Score: 115 bits (287), Expect = 8.850e-26
Identity = 79/220 (35.91%), Postives = 108/220 (49.09%), Query Frame = 2

Query:    2 QHGMYIIGNAGMLESKAGTIWSESVIPTLRAKDAIGSTLALQCARHEDAVT--MIRKHEEFASLAGDGGCSRVCSSRLPCGHTCVRRCHPDDPHHLGVRCSEPCPRLLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVS---CEASRRPASIRWVRLVRRWGRVATKMIPGCGHVVRGRCTATKAIVENPAECRNSCGKPLPCGHSCAEPCGRC 646
            QHGMY+IGNA      +  +W++ V+  L     IG  L LQC RH D     ++ K ++F  +A +GGC   C  RLPCGH+C+ RCH ++ H+  V+C EPCPRL K             XXXXX                +S   C  ++ P+SI   ++V+       K +PGCGH+V   C     +  +   C   C  P PCGHSC   C RC
Sbjct: 1191 QHGMYLIGNANTYRHVS--MWAK-VLGILEKNGDIGKELELQCPRHPDPKEPLLVSKADDFLRVAPEGGCILRCDQRLPCGHSCINRCHHENLHNA-VKCLEPCPRLKKGCQHPCRLSCGDAXXXXXDEYLKGLCITLACGHTISEARCWEAQDPSSIVCNQMVK-------KEVPGCGHMVEVSCHID--VGADLYRCGKICLDPHPCGHSCKRLCCRC 1397

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BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot
Match: A0A1Y2EE26_9PEZI (Uncharacterized protein n=1 Tax=Pseudomassariella vexata TaxID=1141098 RepID=A0A1Y2EE26_9PEZI)

HSP 1 Score: 108 bits (271), Expect = 1.200e-23
Identity = 67/218 (30.73%), Postives = 95/218 (43.58%), Query Frame = 2

Query:    2 QHGMYIIGNAGMLESKAGTIWSESVIPTLRAKDAIGSTLALQCARHEDAVTMIRKHEEFASLAGDGGCSRVCSSRLPCGHTCVRRCHPDDPHHLGVRCSEPCPRLLKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVS---CEASRRPASIRWVRLVRRWGRVATKMIPGCGHVVRGRCTATKAIVENPAECRNSCGKPLPCGHSCAEPCGRC 646
            QHGMY+IGN+         +W++ V+  L      G  L LQC RH D   ++   + F   + +GGC+  C  RLPCGH+C+ RCH  +  H  V+C EPCPR  K                                  VS   C  ++ P++I     V+       K +PGC H +   C    ++  +  +C   CG+P  CGHSC   C RC
Sbjct: 1003 QHGMYLIGNSNTYRHV--NMWAK-VLDILVQTGNFGDKLELQCPRHPDTPILVSDPDHFLQFSPEGGCNLPCDRRLPCGHSCISRCH-HNTLHKAVKCLEPCPRPKKGCDHPCRRDCGEPCLPKCVEKLRGLNITLSCGHKVSSALCWQAQNPSTIACQEKVQ-------KTVPGCDHTLTVTCPTDVSV--DAFKCGEICGEPQRCGHSCRSECWRC 1207

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BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot
Match: A0A388MBT3_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MBT3_CHABU)

HSP 1 Score: 107 bits (267), Expect = 4.250e-23
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 2

Query:    2 QHGMYIIGNAGMLESKAGTIWSESVIPTLRAKDAIGSTLALQCARHEDAVTMIRKHEEFASLAGDGGCSRVCSSRLPCGHTCVRRCHPDDPHHLGVRCSEPCPRL 316
            +HG+YI+GN   L +   +     V   LR  + +G+ L L+CA+H D +T I   E+FA L  DGGC+  C  RLPCGH C RRCHPDD  H GV C +PC RL
Sbjct: 2190 KHGLYILGNVATLCAHEHSKMWPHVTKILRDAERLGAALPLRCAQHPDKITSIESAEDFAVLVPDGGCNLPCGVRLPCGHECPRRCHPDDRAHEGVLCRKPCARL 2294

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1150.1319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LCR9_ECTSI	2.710e-79	57.92	NF-X1 finger and helicase domain protein, putative...	[more]
A0A6H5JXL6_9PHAE	1.360e-42	82.35	AAA_12 domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A388L1F4_CHABU	8.570e-34	34.80	Uncharacterized protein n=1 Tax=Chara braunii TaxI...	[more]
A0A1Y2GYA4_9FUNG	3.520e-28	35.35	Uncharacterized protein n=1 Tax=Lobosporangium tra...	[more]
UPI0020081487	4.100e-27	33.18	uncharacterized protein n=1 Tax=Daldinia caldarior...	[more]
A0A397SKA8_9GLOM	1.420e-26	30.49	Uncharacterized protein n=1 Tax=Glomus cerebriform...	[more]
A0A2I1GNP4_9GLOM	6.590e-26	28.89	P-loop containing nucleoside triphosphate hydrolas...	[more]
UPI00200804C9	8.850e-26	35.91	uncharacterized protein n=1 Tax=Annulohypoxylon ma...	[more]
A0A1Y2EE26_9PEZI	1.200e-23	30.73	Uncharacterized protein n=1 Tax=Pseudomassariella ...	[more]
A0A388MBT3_CHABU	4.250e-23	47.62	Uncharacterized protein n=1 Tax=Chara braunii TaxI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1150	contig	L-elsbetiae_contig1150:568..5394 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	7
Model size	673
Cds size	672
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815357.2429879-CDS-L-elsbetiae_contig1150:568..649	1622815357.2429879-CDS-L-elsbetiae_contig1150:568..649	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 569..649 -
1691682858.509728-CDS-L-elsbetiae_contig1150:568..649	1691682858.509728-CDS-L-elsbetiae_contig1150:568..649	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 569..649 -
1622815357.259647-CDS-L-elsbetiae_contig1150:1046..1130	1622815357.259647-CDS-L-elsbetiae_contig1150:1046..1130	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 1047..1130 -
1691682858.5241764-CDS-L-elsbetiae_contig1150:1046..1130	1691682858.5241764-CDS-L-elsbetiae_contig1150:1046..1130	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 1047..1130 -
1622815357.2691953-CDS-L-elsbetiae_contig1150:2155..2317	1622815357.2691953-CDS-L-elsbetiae_contig1150:2155..2317	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 2156..2317 -
1691682858.5356286-CDS-L-elsbetiae_contig1150:2155..2317	1691682858.5356286-CDS-L-elsbetiae_contig1150:2155..2317	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 2156..2317 -
1622815357.2804048-CDS-L-elsbetiae_contig1150:2745..2835	1622815357.2804048-CDS-L-elsbetiae_contig1150:2745..2835	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 2746..2835 -
1691682858.5454776-CDS-L-elsbetiae_contig1150:2745..2835	1691682858.5454776-CDS-L-elsbetiae_contig1150:2745..2835	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 2746..2835 -
1622815357.291331-CDS-L-elsbetiae_contig1150:3336..3449	1622815357.291331-CDS-L-elsbetiae_contig1150:3336..3449	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 3337..3449 -
1691682858.553706-CDS-L-elsbetiae_contig1150:3336..3449	1691682858.553706-CDS-L-elsbetiae_contig1150:3336..3449	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 3337..3449 -
1622815357.3054724-CDS-L-elsbetiae_contig1150:4885..4995	1622815357.3054724-CDS-L-elsbetiae_contig1150:4885..4995	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 4886..4995 -
1691682858.5617502-CDS-L-elsbetiae_contig1150:4885..4995	1691682858.5617502-CDS-L-elsbetiae_contig1150:4885..4995	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 4886..4995 -
1622815357.3152637-CDS-L-elsbetiae_contig1150:5362..5394	1622815357.3152637-CDS-L-elsbetiae_contig1150:5362..5394	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 5363..5394 -
1691682858.5697875-CDS-L-elsbetiae_contig1150:5362..5394	1691682858.5697875-CDS-L-elsbetiae_contig1150:5362..5394	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig1150 5363..5394 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1150.1319.1	prot_L-elsbetiae_contig1150.1319.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig1150 569..5394 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig1150:568..5394-
coding sequence from alignment at L-elsbetiae_contig1150:568..5394-

protein sequence of mRNA_L-elsbetiae_contig1150.1319.1

>prot_L-elsbetiae_contig1150.1319.1 ID=prot_L-elsbetiae_contig1150.1319.1|Name=mRNA_L-elsbetiae_contig1150.1319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=224bp
AARHVHHRKRRHARVQSRDDLVGISHPHPQGEGRHRLYARAAVCTPRGCR
HHDPQARGVRLSCRRRWLQPGVLLPPPVRTYLRSKVPSRRPPPPRGALQR
AVPPPPQALRAPVPAALRRRVRAVFPEDPCCGPPLQPPGEKRLLRGFQAT
GVHSVGAVGPSLGTGGYQNDPRLRTRRQGSMHGDQSDRREPCRMPQQLRK
ASAVRPLVRGAVWPLHHAHPLRDQ

mRNA from alignment at L-elsbetiae_contig1150:568..5394-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig1150.1319.1 ID=mRNA_L-elsbetiae_contig1150.1319.1|Name=mRNA_L-elsbetiae_contig1150.1319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4827bp|location=Sequence derived from alignment at L-elsbetiae_contig1150:568..5394- (Laminarionema elsbetiae ELsaHSoW15)
GCAGCACGGCATGTACATCATCGGAAACGCCGGTGAGATCAAATACATAT
ACATATATCGTATTAGTTTTGGTCAGCTGGGCTCGTTTATTGTAGTGTAT
CTCGTTGGCATTGACGGTTACGTGTCGGTTCGACGGTCTAATGAATGTTC
TGACTTTGGCTCCAGGATTTGCGTTTTCCTCCCGAGGGATCACTCTCTTT
CTTTATGCCCTTCCATAACACACGATGCATACAGCAATCCATTGACCTAC
TGCTCGGTCGCACTAGCCGGTGCGAGGATAACGAGTCCCTCCCGACCGAA
CATGAAGTAGGTGAGATGAGGCACGCTCGCTGATGGTCGCGCTTGCTTAT
GGTTTCCTATTCATCTCCCTTTCGTTTGGTGTCACTGCCTGCTGTCTAGG
CATGCTCGAGTCCAAAGCCGGGACGATCTGGTCGGAATCAGTCATCCCCA
CCCTCAGGGCGAAGGACGCCATCGGCTCTACGCTCGCGCTGCAGTGTGCA
CGCCACGAGGTGCGTTTGAAGAGAAGCAGCACCAGGCCTCAAACATAACT
AGTCTACGCAGGGTTTTCATCTTTTCGTCTTGAGCTAATATATGAGATAA
AGCGTGGAAACCTAACATATGAGATAAAGTATGGAAACCTAACATATGAG
ATAAAGTATGGAAACCTAACATATGAGATAAAGTATGGAAACCTAACATA
CGAGATAAAGTATGGAAACTTAGCATATGAGATAAAGTATGGAAACCTAA
CGAGATCAAGTATGGAAACCTAACATATGAGATCAAGTATGGAAACCTAA
CATATGAGATAAAGTATGGAAACCGGAAAAGGGGGGTCGGTGGTTGGGGT
TAGGGTTAGGTTTAGGAGTATTTTCCTAGATGAAGTTAATTTCCGGCGTA
GGGGGTACTAAAACATAGATCGCAAAGTACATCTATTTCTGCACGTGGCA
GCCATGAGGACTGTAACTGTAACTTTATTGGTCTAGATCCAACTTGTACA
TCAAAAGTGAAGTACAGAATAGACTACATAGTCTAGGAGGAGGATGAAAC
TACCCGGAAAATGAACCGTTTCACGTCGGGGTTCTCGACGGCCCAGAACC
CGCCGAAGAATCGGTTCCCACGCGGCCGGTCCCGAATAGAGTGTATGCGT
TTCGCGTAGGTTTTTAACTCATTTGACCAAACAGTGATATCTGTGTAAAG
AGCCTACGTGATCGACTTCGCTCGATACTGGGTGAAAGCGCTGTGGATGC
GTGCGAAATGGGCTCTTGCACGTCACTTTCATAAAGATCCTCGGAGACCG
GAACTATTGATAGGCGGAGATCCGCGGGGCGTTGATGTTGCTATAGAGCC
ACGACGGCACACGCACATGATACGCGAAAAACAACGCCCATCCCCGCACC
AGCATCCCCACACAAGCATCAACCCCACACCACGAGCTGCTTGACCGTAA
AATGACCACCGGAAAAATCCCGCAGGTGTACGCGCGCATTACGCCGGCCA
GTGAACAGCCCACTTTCTCATTTGAGGGTATTGCCACTGTTTTTACCCAT
TTCACGTGGTGGACCGATTTGCTCGAGTCGAGCAAATGACCCAACGGGGT
AACCTACAAAGAGGTAAAACGAGGCCCGGAAAAACAAACGCACCCACTCT
AGAATAAAACCACCAATTAAGAGACACTTTTTCAAATTGGCATATCTCCG
CAGACAATCCGCGGAGACCCTTCCTTTTTTTTCAGTTTGGCAGCCTGCCG
TTGGCTTTCGTTTGAGCCCTTCAGCATGCCGATCAGAGCATTCACAGACA
AACGAGATAGAGCAAATCGCCCACTAGTGCCTCTTAATAGGCAGATGTCT
CTTAATTGGCAGTTTTACTCTAATAACTCCTATTATGTTAGTCTGGCCTA
GACCGACTTTTGCCGGCTCCGCCGCCGTGCCGCTTGTTGTGGCAGGATGC
CGTCACCATGATCCGCAAGCACGAGGAGTTCGCCTCTCTTGCCGGAGACG
GTGGCTGCAGCCGGGTGTGCTCCTCCCGCCTCCCGTGCGGACATACCTGC
GTTCGAAGGTACATATGTGCGCGTGCGTTTCCGTGCATCTATCGGCAGGT
ATTCAAAGAATGTCGCCAGTGACTGCCGGCTCGGCATTTTTTGTTTTAGT
TGGCATTTTTTCCAGTGAGGTCGAAGGGCTTCTTGCCGCCAAAGGCATCT
TGCCTGGGCTCTGAGCTGGTCATCATACAGAAGGTTCCTTTCCACGAGGC
CCCCACTCCCACCTTCTGCGGTGCTGCTTGCCTGGGAGCTTTTGTCGCGA
GAAGGGTTCAGCCGTCCCTTTCCCTCGTCGACGGTGAGGTCGAAGTCTTA
CGCGAACCGAATCGTGAATAACTGGGTTTTCTCGTTTCTGCTCTACGGTC
AGGGTGAACGCCTTGTTCGGTTGCTTGACTGGTACGAGTACGAGGGATAT
CAACTTGTATCAAAGGACACAGTGTGTGACGAAGAAGAACCTTTTTACGC
AGAAGAACCTCTCGCGCCTTCTCGCATGCGGCCGTCACGTAACTGACCAA
AACCACCAGGTGCCATCCAGACGACCCCCACCACCTAGGGGTGCGCTGCA
GCGAGCCGTGCCCCCGCCTCCTCAAGCCCTGCGAGCACCCGTGCCAGCGG
TACGATACTCGCTCGTCGACAGCAGTGCCTTCTTCCCCCCCCCCCCTCCG
ATCCGAGAGTTCCGCGAAAATTCCACTGAAAATGGCAAAAGCTTCTTAGA
CAGCACCTAGATATGCACTTACCTATCTATACTTACGCCTGGCGAGACGC
AAGATCCCTCGGGGTCCGGTTTAGTACCGCCGGACGCGTATGTACCATAC
TTGTGTTTGTTTCTGTTGTCTTCAAAGGCGTCGAGTGTGCCTCGTTTTGT
CACCACGGGCCCCCAAGGATGTTTTGGACTATAATAGAGCGCTAATGTGA
GAAACAACAACAACAACAACAACAACACCTGGAGGCGAGTAGTAAGCCAC
ATGCATGTTTGGTATCCCGAAGCACTACACCCATACGTACGTACGCGATA
CATATTCCACCCACCGCACCACGCCAGGCTCTGCGGCGACGAGTGCGAGC
CGTGTTCCCGGAGGATCCGTGTTGTGGACCTCCCTTGCAGCCACCAGGCG
AGAAACGTCTCCTGCGAGGCTTCCAGGCGACCGGCGTCCATTCGGTGGGT
GCGGTTGGTCCGTCGTTGGGGACGGGTGGCTACCAAAATGTCTTGGTACC
CCCAAAATGTCTTGGTACCAAAACGCCTTGGTAAATATACCAAAATGTCT
TGTAAATTTCCAAGACATAGCAAGTCATTCCCCCATGTTGATACCGTAAT
CATGCGAAGGTTCGCACCCCCGTGTAAGCGTTTTTCTATAGCGTATTTCT
CCACAACCAGGAGGGTACCACTGCCGAAAAGGGTGGTTTTCGAAACGTCT
CGTCGGGGGCTTTCCAGAGAGGTATCAGTTAGTGTTCGCACCCTCCTGGT
TGTGGAGAAATACGCTTTAGAGAAATGATAACATGGGGGTGCGAACCTTC
GCATGATTACGGTATGTATCTCTTGGCAAATCACATACATAATACTATCT
GCTTGGCGCCTTGCTACCAAAATGTCTTGGTAGCCCAAAATGTCTTGGTA
CCAAAAATTCTTGGTAAATATGCCAAAATGTCTTGTTAATTTCCAAGACA
TATTCATTCCTCCGTGTAGATATGTATCTCTTGGCAAATTACATACTGGT
ACATAATACTATCTGCTTGGCGTCTTGCTACCAAAATGTCTTGGTACCAA
AACGTCTCGGTTATACCAAAATGTCTTGTTAATTTCCAAGACATATTCAT
CCCTCCATGTAGATACGCATGATGTGTTGGCAAATTACATACTCCGTATA
TACATACTATCTGGTTGGCGTACTTACGTACGCTTTCGGCAAGGCGGAAG
GCGGAAGGAACGAGAAGGGTGAGCAAACGACGGGCGGGGTTTTCCAGCTT
AATCCTCGTCGGGGATTTCCGCCATCTCGACCCGCGCGCGCAAAAAGTTG
GAGAAAAAACAAAAGACAGGGACAAATGCATCCGACGTGGGGAAATATGT
AGAGCACCGATTATGCGGGCATCAACCCTCGTTTTTCTCTTCTTGACCCG
CACTTCTCTCCGGAGCCCCCGGCCCACCCGGCCTTCCCACCGCCGCCACC
TCCGCTTCTTCGATTCTCGTGCGGGTTCTTAAATGCAAAGGTGCGTCGAA
ATGGTGAAGCACAGGATCCCCGGCTGCGGACACGTCGTCAGGGGTCGATG
CACGGCGACCAAAGCGATCGTCGAGAACCCTGCCGAATGCCGCAACAGGT
ACTTTCGATTCCGAGCCGTTTTGCGGTAGTTAATGAACGTAGAAGGTATG
GCGATAGGCGAGTGTCGACGTCTGCTCAGCAGAGGGCATGGCTCAGAAGT
ATAGGGTGTTCTGTGCAGAACTTTTCTCAGCTGAGCTTTTCTCAGCTGAA
CGTTTCTCAGCTGAACGTTTCTCAGCTGAACTTTTCTCAGCTGAGCATCC
CAAGTTGGCCGGGGTTGTGAGCTTTCGCTTTTGTTATGTTGACGAAGTCA
GAGCCCCTTGCCCAATTCCAATAGACATAGTCTACCTTGCATCTTACTGC
CGGTTTCCAACGCCGTAAAAATTGCTGTTCCGCCAGATCGTTCACGCCGC
CATCCCTTCACCCGCCACCCTTGCTTTCGGAAAACCAAACCCCAGCTGCG
GAAAGCCTCTGCCGTGCGGCCACTCGTGCGCGGAGCCGTGTGGCCGCTGC
ACCACGCTCACCCTCTCCGAGACCAAG

Coding sequence (CDS) from alignment at L-elsbetiae_contig1150:568..5394-

>mRNA_L-elsbetiae_contig1150.1319.1 ID=mRNA_L-elsbetiae_contig1150.1319.1|Name=mRNA_L-elsbetiae_contig1150.1319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1344bp|location=Sequence derived from alignment at L-elsbetiae_contig1150:568..5394- (Laminarionema elsbetiae ELsaHSoW15)
GCAGCACGGCATGTACATCATCGGAAACGCCGGCAGCACGGCATGTACAT
CATCGGAAACGCCGGCATGCTCGAGTCCAAAGCCGGGACGATCTGGTCGG
AATCAGTCATCCCCACCCTCAGGGCGAAGGACGCCATCGGCTCTACGCTC
GCGCTGCAGTGTGCACGCCACGAGGCATGCTCGAGTCCAAAGCCGGGACG
ATCTGGTCGGAATCAGTCATCCCCACCCTCAGGGCGAAGGACGCCATCGG
CTCTACGCTCGCGCTGCAGTGTGCACGCCACGAGGATGCCGTCACCATGA
TCCGCAAGCACGAGGAGTTCGCCTCTCTTGCCGGAGACGGTGGCTGCAGC
CGGGTGTGCTCCTCCCGCCTCCCGTGCGGACATACCTGCGTTCGAAGGAT
GCCGTCACCATGATCCGCAAGCACGAGGAGTTCGCCTCTCTTGCCGGAGA
CGGTGGCTGCAGCCGGGTGTGCTCCTCCCGCCTCCCGTGCGGACATACCT
GCGTTCGAAGGTGCCATCCAGACGACCCCCACCACCTAGGGGTGCGCTGC
AGCGAGCCGTGCCCCCGCCTCCTCAAGCCCTGCGAGCACCCGTGCCAGCG
GTGCCATCCAGACGACCCCCACCACCTAGGGGTGCGCTGCAGCGAGCCGT
GCCCCCGCCTCCTCAAGCCCTGCGAGCACCCGTGCCAGCGGCTCTGCGGC
GACGAGTGCGAGCCGTGTTCCCGGAGGATCCGTGTTGTGGACCTCCCTTG
CAGCCACCAGGCGAGAAACGTCTCCTGCGAGGCTTCCAGGCGACCGGCGT
CCATTCGGTGGGTGCGGTTGGTCCGTCGTTGGGGACGGGTGGCTACCAAA
ATGCTCTGCGGCGACGAGTGCGAGCCGTGTTCCCGGAGGATCCGTGTTGT
GGACCTCCCTTGCAGCCACCAGGCGAGAAACGTCTCCTGCGAGGCTTCCA
GGCGACCGGCGTCCATTCGGTGGGTGCGGTTGGTCCGTCGTTGGGGACGG
GTGGCTACCAAAATGATCCCCGGCTGCGGACACGTCGTCAGGGGTCGATG
CACGGCGACCAAAGCGATCGTCGAGAACCCTGCCGAATGCCGCAACAGGA
TCCCCGGCTGCGGACACGTCGTCAGGGGTCGATGCACGGCGACCAAAGCG
ATCGTCGAGAACCCTGCCGAATGCCGCAACAGCTGCGGAAAGCCTCTGCC
GTGCGGCCACTCGTGCGCGGAGCCGTGTGGCCGCTGCACCACGCTCACCC
TCTCCGAGACCAACTGCGGAAAGCCTCTGCCGTGCGGCCACTCGTGCGCG
GAGCCGTGTGGCCGCTGCACCACGCTCACCCTCTCCGAGACCAA