mRNA_L-elsbetiae_contig115.1317.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig115.1317.1
Unique NamemRNA_L-elsbetiae_contig115.1317.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig115.1317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig115contigL-elsbetiae_contig115:7925..8421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size497
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig115.1317.1prot_L-elsbetiae_contig115.1317.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig115 8018..8326 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.0087278-UTR-L-elsbetiae_contig115:7924..80171622815356.0087278-UTR-L-elsbetiae_contig115:7924..8017Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig115 7925..8017 +
1691682857.878627-UTR-L-elsbetiae_contig115:7924..80171691682857.878627-UTR-L-elsbetiae_contig115:7924..8017Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig115 7925..8017 +
1622815356.0346603-UTR-L-elsbetiae_contig115:8326..84211622815356.0346603-UTR-L-elsbetiae_contig115:8326..8421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig115 8327..8421 +
1691682857.9002674-UTR-L-elsbetiae_contig115:8326..84211691682857.9002674-UTR-L-elsbetiae_contig115:8326..8421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig115 8327..8421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815356.0199373-CDS-L-elsbetiae_contig115:8017..83261622815356.0199373-CDS-L-elsbetiae_contig115:8017..8326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig115 8018..8326 +
1691682857.890822-CDS-L-elsbetiae_contig115:8017..83261691682857.890822-CDS-L-elsbetiae_contig115:8017..8326Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig115 8018..8326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig115.1317.1

>prot_L-elsbetiae_contig115.1317.1 ID=prot_L-elsbetiae_contig115.1317.1|Name=mRNA_L-elsbetiae_contig115.1317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MCVGSPARNRAPPSGALTRLRVQARSNGCSRRRHWQARSTNALFVLVPQT
SLSRGRFCGNFNLMAATGCRGIPHRGRTFVSGAQEEATFKPHSPLQTVQK
EG*
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mRNA from alignment at L-elsbetiae_contig115:7925..8421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig115.1317.1 ID=mRNA_L-elsbetiae_contig115.1317.1|Name=mRNA_L-elsbetiae_contig115.1317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=497bp|location=Sequence derived from alignment at L-elsbetiae_contig115:7925..8421+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCTTGTAGTACATATGTATGTACTCCCCCGCCTTCAAAATATAATGTG
AGTGAGACACAAACCTGCGTGAACATAGCTTGGGTGCGTATGTATGTGTG
TAGGTTCGCCTGCGAGGAATCGAGCACCCCCCTCGGGTGCTCTTACGCGC
CTTCGAGTTCAGGCTAGGAGTAATGGCTGCTCACGACGTCGTCACTGGCA
GGCGCGTTCTACCAACGCGTTGTTTGTGCTTGTCCCACAGACGAGTTTAT
CGAGGGGGCGCTTCTGTGGAAACTTCAATCTGATGGCCGCGACAGGGTGC
CGGGGAATCCCCCATCGTGGGCGTACTTTTGTTTCGGGGGCGCAGGAAGA
GGCCACTTTTAAACCGCACTCGCCGCTGCAAACGGTCCAGAAAGAAGGAT
GATCGTTTCCTCGTTTGGTGGTTTCTTGCTCCCCCCAATTTCTATCCGAA
CTACGATCGCTCCCATAGGTGCCCAGCAGGGCCCTGCACGGTCAGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig115:7925..8421+

>mRNA_L-elsbetiae_contig115.1317.1 ID=mRNA_L-elsbetiae_contig115.1317.1|Name=mRNA_L-elsbetiae_contig115.1317.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig115:7925..8421+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGTAGGTTCGCCTGCGAGGAATCGAGCACCCCCCTCGGGTGCTCT
TACGCGCCTTCGAGTTCAGGCTAGGAGTAATGGCTGCTCACGACGTCGTC
ACTGGCAGGCGCGTTCTACCAACGCGTTGTTTGTGCTTGTCCCACAGACG
AGTTTATCGAGGGGGCGCTTCTGTGGAAACTTCAATCTGATGGCCGCGAC
AGGGTGCCGGGGAATCCCCCATCGTGGGCGTACTTTTGTTTCGGGGGCGC
AGGAAGAGGCCACTTTTAAACCGCACTCGCCGCTGCAAACGGTCCAGAAA
GAAGGATGAATGTGTGTAGGTTCGCCTGCGAGGAATCGAGCACCCCCCTC
GGGTGCTCTTACGCGCCTTCGAGTTCAGGCTAGGAGTAATGGCTGCTCAC
GACGTCGTCACTGGCAGGCGCGTTCTACCAACGCGTTGTTTGTGCTTGTC
CCACAGACGAGTTTATCGAGGGGGCGCTTCTGTGGAAACTTCAATCTGAT
GGCCGCGACAGGGTGCCGGGGAATCCCCCATCGTGGGCGTACTTTTGTTT
CGGGGGCGCAGGAAGAGGCCACTTTTAAACCGCACTCGCCGCTGCAAACG
GTCCAGAAAGAAGGATGA
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