mRNA_L-elsbetiae_contig11496.1314.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11496.1314.1
Unique NamemRNA_L-elsbetiae_contig11496.1314.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11496.1314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11496contigL-elsbetiae_contig11496:4280..5424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size448
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11496.1314.1prot_L-elsbetiae_contig11496.1314.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11496 4281..5424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815355.7452075-CDS-L-elsbetiae_contig11496:4280..43641622815355.7452075-CDS-L-elsbetiae_contig11496:4280..4364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11496 4281..4364 -
1691682857.6662211-CDS-L-elsbetiae_contig11496:4280..43641691682857.6662211-CDS-L-elsbetiae_contig11496:4280..4364Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11496 4281..4364 -
1622815355.7569482-CDS-L-elsbetiae_contig11496:4647..47231622815355.7569482-CDS-L-elsbetiae_contig11496:4647..4723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11496 4648..4723 -
1691682857.6779237-CDS-L-elsbetiae_contig11496:4647..47231691682857.6779237-CDS-L-elsbetiae_contig11496:4647..4723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11496 4648..4723 -
1622815355.7682965-CDS-L-elsbetiae_contig11496:5137..54241622815355.7682965-CDS-L-elsbetiae_contig11496:5137..5424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11496 5138..5424 -
1691682857.7049778-CDS-L-elsbetiae_contig11496:5137..54241691682857.7049778-CDS-L-elsbetiae_contig11496:5137..5424Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11496 5138..5424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11496.1314.1

>prot_L-elsbetiae_contig11496.1314.1 ID=prot_L-elsbetiae_contig11496.1314.1|Name=mRNA_L-elsbetiae_contig11496.1314.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
VDTTGHHASVASIVCNFILLSPVDVQERRDYLEPVEAHFVLEISILTWFL
KDLSGLVRADTPLRQAAMDRRNSGGGGDYGPGDGGRAGGDRSSYDRPSQP
EQGVGGGGRWQNDMYDSNAQQPRGHHGGGGGGGGYRERGGYQHDQRDNR
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mRNA from alignment at L-elsbetiae_contig11496:4280..5424-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11496.1314.1 ID=mRNA_L-elsbetiae_contig11496.1314.1|Name=mRNA_L-elsbetiae_contig11496.1314.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1145bp|location=Sequence derived from alignment at L-elsbetiae_contig11496:4280..5424- (Laminarionema elsbetiae ELsaHSoW15)
GTCGACACGACAGGACACCACGCAAGCGTCGCCTCAATCGTGTGCAATTT
TATCCTCTTAAGCCCTGTGGATGTTCAAGAGCGTCGAGATTATCTTGAAC
CGGTAGAAGCACATTTTGTGTTGGAGATATCAATTTTGACTTGGTTCCTC
AAGGATCTCTCTGGTCTGGTGCGAGCAGACACACCCCTTCGACAGGCAGC
GATGGACAGGCGTAACAGCGGGGGCGGAGGGGATTATGGCCCCGGTGATG
GTGGAAGAGCGGGCGGTGATCGTTCGTCCTACGATCGGTGAGTCTATGCT
CGTTCCTCGCACCAAAATCTGCTATTGAGCAGGCGAGCTCTCTACGGCTG
CGCGCTGCTTGGACGTTGCACTACAATAAAGTACAGGGTTACATGGGGCG
GCCTGGTACTGGACATGCAGGGCAATCTTGAATGCGGCATGGGTGGACAG
CCCTCGATTGCTTGATAATCGTTAGCATTCGCTATACTCTCACGACCGGT
GCTGGGATGGCTTGGGGGCGTGCTGGGCGGCGTCGTGGACCGGGGGAGCA
GGCAGAGGTTCGACTTCCCGTGATGCTTCATTCGTGTAGTTTGTGCAGCA
GGACCTTGCTGCTGGTGTTAAGCTGCGACAGAGCTTCATTGCCCGCACCC
GTACCCGTCCGTTTCCGGTCCTCTGCCCTCGATCTGTCTGCTGCTGTACA
GGCCCAGCCAGCCAGAGCAGGGCGTTGGAGGTGGAGGTCGGTGGCAAAAT
GACATGTACGACAGCAACGCCCAGCAGGTGCAGCGGTGGTGCTTTCAGTT
TACCATCTCTCCATCGAGCTCCTGGTGCTGTTACATGCAATGTCTGCTCA
TCGCGCGCAGAGTGTATCCGTTTTTGCTGCCCACCGAAACACTCATGCGC
TTTTTGAAACCTCCGTCAGGCAATCTTCCAAGTCGCTCCCACACCCGTAC
CTTTTCTCCTTCCCAGCACGACCTCATACTGCTGTGTCTCGCGTTTGATA
TGTATAATTGCTCTCACGCTTCTTTTCCTCCGCAAAAAATACCATGGAAA
CGCTCAACAGCCACGTGGACACCACGGTGGAGGCGGCGGTGGAGGTGGTT
ATCGGGAAAGAGGCGGCTATCAGCATGACCAGCGTGACAACAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11496:4280..5424-

>mRNA_L-elsbetiae_contig11496.1314.1 ID=mRNA_L-elsbetiae_contig11496.1314.1|Name=mRNA_L-elsbetiae_contig11496.1314.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig11496:4280..5424- (Laminarionema elsbetiae ELsaHSoW15)
GTCGACACGACAGGACACCACGCAAGCGTCGCCTCAATCGTGTGCAATTT
TATCCTCTTAAGCCCTGTGGATGTTCAAGAGCGTCGAGATTATCTTGAAC
CGGTAGAAGCACATTTTGTGTTGGAGATATCAATTTTGACTTGGTTCCTC
AAGGATCTCTCTGGTCTGGTGCGAGCAGACACACCCCTTCGACAGGCAGC
GATGGACAGGCGTAACAGCGGGGGCGGAGGGGATTATGGCCCCGGTGATG
GTGGAAGAGCGGGCGGTGATCGTTCGTCCTACGATCGGTCGACACGACAG
GACACCACGCAAGCGTCGCCTCAATCGTGTGCAATTTTATCCTCTTAAGC
CCTGTGGATGTTCAAGAGCGTCGAGATTATCTTGAACCGGTAGAAGCACA
TTTTGTGTTGGAGATATCAATTTTGACTTGGTTCCTCAAGGATCTCTCTG
GTCTGGTGCGAGCAGACACACCCCTTCGACAGGCAGCGATGGACAGGCGT
AACAGCGGGGGCGGAGGGGATTATGGCCCCGGTGATGGTGGAAGAGCGGG
CGGTGATCGTTCGTCCTACGATCGGCCCAGCCAGCCAGAGCAGGGCGTTG
GAGGTGGAGGTCGGTGGCAAAATGACATGTACGACAGCAACGCCCAGCAG
GCCCAGCCAGCCAGAGCAGGGCGTTGGAGGTGGAGGTCGGTGGCAAAATG
ACATGTACGACAGCAACGCCCAGCAGCCACGTGGACACCACGGTGGAGGC
GGCGGTGGAGGTGGTTATCGGGAAAGAGGCGGCTATCAGCATGACCAGCG
TGACAACAGGCCACGTGGACACCACGGTGGAGGCGGCGGTGGAGGTGGTT
ATCGGGAAAGAGGCGGCTATCAGCATGACCAGCGTGACAACAGG
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