mRNA_L-elsbetiae_contig11495.1313.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11495.1313.1
Unique NamemRNA_L-elsbetiae_contig11495.1313.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11495.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11495contigL-elsbetiae_contig11495:3031..3617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size587
Cds size357
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815355.6787245-UTR-L-elsbetiae_contig11495:3030..31091622815355.6787245-UTR-L-elsbetiae_contig11495:3030..3109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11495 3031..3109 +
1691682857.627721-UTR-L-elsbetiae_contig11495:3030..31091691682857.627721-UTR-L-elsbetiae_contig11495:3030..3109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11495 3031..3109 +
1622815355.7053084-UTR-L-elsbetiae_contig11495:3466..36171622815355.7053084-UTR-L-elsbetiae_contig11495:3466..3617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11495 3467..3617 +
1691682857.6559994-UTR-L-elsbetiae_contig11495:3466..36171691682857.6559994-UTR-L-elsbetiae_contig11495:3466..3617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11495 3467..3617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815355.6940608-CDS-L-elsbetiae_contig11495:3109..34661622815355.6940608-CDS-L-elsbetiae_contig11495:3109..3466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11495 3110..3466 +
1691682857.6450372-CDS-L-elsbetiae_contig11495:3109..34661691682857.6450372-CDS-L-elsbetiae_contig11495:3109..3466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11495 3110..3466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11495.1313.1prot_L-elsbetiae_contig11495.1313.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11495 3110..3466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11495.1313.1

>prot_L-elsbetiae_contig11495.1313.1 ID=prot_L-elsbetiae_contig11495.1313.1|Name=mRNA_L-elsbetiae_contig11495.1313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MDLAQLPTFHTTWKAPPPDYCILPRGKTNGKLDLNGEIRSFVLSRTVISH
SPARQVDWPAVVRWRREEGEAVVVVVSHISSLVQKCRCVALRSVGHSQRV
RGGLGRRPTADCCHVALL*
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mRNA from alignment at L-elsbetiae_contig11495:3031..3617+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11495.1313.1 ID=mRNA_L-elsbetiae_contig11495.1313.1|Name=mRNA_L-elsbetiae_contig11495.1313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=587bp|location=Sequence derived from alignment at L-elsbetiae_contig11495:3031..3617+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATCCGAACCGACCCGGAACTTAATCTGGTACTGCCCATGCCCCGACG
ATACCTTGCCGGCGATCGACGATCTTTTCATGGACCTGGCACAGCTGCCT
ACGTTCCACACGACTTGGAAGGCGCCCCCGCCAGACTATTGTATCCTACC
ACGAGGTAAAACAAACGGCAAACTAGATTTAAACGGCGAAATCAGGAGTT
TTGTTCTATCGAGAACCGTCATTTCGCACAGTCCCGCCCGCCAAGTTGAT
TGGCCCGCTGTCGTGCGCTGGCGCCGGGAGGAGGGAGAGGCTGTTGTTGT
TGTTGTTTCTCACATTAGCTCTCTAGTCCAAAAGTGTAGGTGCGTGGCGC
TAAGGTCTGTGGGACACAGCCAAAGAGTTAGAGGGGGGTTAGGCAGAAGA
CCGACCGCTGATTGCTGCCACGTCGCCCTCTTGTAGGGTTACATAGCACG
TAGACTACATTTCTCGCTAGGTGTTTTAGCGAAGAGGATGCCGAGCAAGT
GTAACCATGTTGGCTGTACCAAGGAGTCGATCTTTGGTGCTGCCGGCAGC
AAGAAGAAAGAGTTCTGCTCTGGACATAAGAAGGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11495:3031..3617+

>mRNA_L-elsbetiae_contig11495.1313.1 ID=mRNA_L-elsbetiae_contig11495.1313.1|Name=mRNA_L-elsbetiae_contig11495.1313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig11495:3031..3617+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCTGGCACAGCTGCCTACGTTCCACACGACTTGGAAGGCGCCCCC
GCCAGACTATTGTATCCTACCACGAGGTAAAACAAACGGCAAACTAGATT
TAAACGGCGAAATCAGGAGTTTTGTTCTATCGAGAACCGTCATTTCGCAC
AGTCCCGCCCGCCAAGTTGATTGGCCCGCTGTCGTGCGCTGGCGCCGGGA
GGAGGGAGAGGCTGTTGTTGTTGTTGTTTCTCACATTAGCTCTCTAGTCC
AAAAGTGTAGGTGCGTGGCGCTAAGGTCTGTGGGACACAGCCAAAGAGTT
AGAGGGGGGTTAGGCAGAAGACCGACCGCTGATTGCTGCCACGTCGCCCT
CTTGTAGATGGACCTGGCACAGCTGCCTACGTTCCACACGACTTGGAAGG
CGCCCCCGCCAGACTATTGTATCCTACCACGAGGTAAAACAAACGGCAAA
CTAGATTTAAACGGCGAAATCAGGAGTTTTGTTCTATCGAGAACCGTCAT
TTCGCACAGTCCCGCCCGCCAAGTTGATTGGCCCGCTGTCGTGCGCTGGC
GCCGGGAGGAGGGAGAGGCTGTTGTTGTTGTTGTTTCTCACATTAGCTCT
CTAGTCCAAAAGTGTAGGTGCGTGGCGCTAAGGTCTGTGGGACACAGCCA
AAGAGTTAGAGGGGGGTTAGGCAGAAGACCGACCGCTGATTGCTGCCACG
TCGCCCTCTTGTAG
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