mRNA_L-elsbetiae_contig11491.1310.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11491.1310.1
Unique NamemRNA_L-elsbetiae_contig11491.1310.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11491.1310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11491contigL-elsbetiae_contig11491:1577..2546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11491.1310.1prot_L-elsbetiae_contig11491.1310.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11491 1630..2495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815355.3515453-UTR-L-elsbetiae_contig11491:1576..16291622815355.3515453-UTR-L-elsbetiae_contig11491:1576..1629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11491 1577..1629 -
1691682857.477001-UTR-L-elsbetiae_contig11491:1576..16291691682857.477001-UTR-L-elsbetiae_contig11491:1576..1629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11491 1577..1629 -
1622815355.3971682-UTR-L-elsbetiae_contig11491:2495..25461622815355.3971682-UTR-L-elsbetiae_contig11491:2495..2546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11491 2496..2546 -
1691682857.5021722-UTR-L-elsbetiae_contig11491:2495..25461691682857.5021722-UTR-L-elsbetiae_contig11491:2495..2546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11491 2496..2546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815355.3640635-CDS-L-elsbetiae_contig11491:1629..17811622815355.3640635-CDS-L-elsbetiae_contig11491:1629..1781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11491 1630..1781 -
1691682857.4851482-CDS-L-elsbetiae_contig11491:1629..17811691682857.4851482-CDS-L-elsbetiae_contig11491:1629..1781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11491 1630..1781 -
1622815355.3810153-CDS-L-elsbetiae_contig11491:2434..24951622815355.3810153-CDS-L-elsbetiae_contig11491:2434..2495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11491 2435..2495 -
1691682857.4927986-CDS-L-elsbetiae_contig11491:2434..24951691682857.4927986-CDS-L-elsbetiae_contig11491:2434..2495Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11491 2435..2495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11491.1310.1

>prot_L-elsbetiae_contig11491.1310.1 ID=prot_L-elsbetiae_contig11491.1310.1|Name=mRNA_L-elsbetiae_contig11491.1310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
MQCCMYGDSCGTNALLLEYTSCKTELVADDCEITDLCNGSMGSFVRFGAT
TVGAAAAAGILLVSTLGVLL*
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mRNA from alignment at L-elsbetiae_contig11491:1577..2546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11491.1310.1 ID=mRNA_L-elsbetiae_contig11491.1310.1|Name=mRNA_L-elsbetiae_contig11491.1310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=970bp|location=Sequence derived from alignment at L-elsbetiae_contig11491:1577..2546- (Laminarionema elsbetiae ELsaHSoW15)
GAAAGCGATTGCAGCGCCGACTTGACCGCCACGTGTCATGGCCAGGCCAA
CATGCAGTGCTGCATGTATGGAGATTCTTGCGGTACTAACGCTCTTCTCC
TGGAATACACCAGTGAGTGCTGCTGCTTCGAAGAGTATTGTTCTGGTATG
TATCGTTGGCGGCAAAAAGTAAATGATGGTGAGAGGGGTCGTGAGGTGCC
TACGGTTACACCGACCGTTAGTCTACACCATGATTGCTATTATATCTAAA
CTACATAATAGATGTATCTAATATATATACCTCCCCCTCGAAGAAATGTC
TGTCCTTAAGGGCGCAAGTGGGCCTCAATGTTGTGGGGTTTGATATCACA
GTCACACAGTGGGTAGCTGTTAGTCATAGCGCGGGTATATCTTGTGTCGT
AAGATATACGACCAACGGCTTTCTGTATCTATCTCCGTATCTACATAGAT
GCGGCGGACTGGTCTCCGCCGCCTTCTGATCGGTCTATAATTTAGGACGA
AGAGTGTACGTTGTCGTACACTCTCTCACACCCGAGTAGCTCGTTAGCTA
AAGGAAGGATTAAAACAAGTGATGAGTTTTCAACTCGATTACAACGCCAC
TGTGTGTACCCTCACAAAGGGTAGACGACTGGAGTTAGAGACAAAAATAA
AAATAAAAGCTATTCGCACCGCTAGGGATTGCCAGCGCGCGTGACTCTGT
TAGATCAACCCAGCATCGCTCGACACAAATAATATTATTTTGCTCTTCTT
TGTTGTTGATATCAGGCTGCAAGACGGAACTTGTCGCGGACGACTGTGAG
ATAACCGACCTCTGCAACGGTAGCATGGGCTCATTCGTCCGCTTCGGTGC
CACCACTGTCGGTGCTGCTGCTGCCGCGGGCATTCTCCTCGTCTCTACTT
TGGGTGTGCTCCTCTAAATTCCCCTCTCACGTTAATTGGTAGTCTAGATA
CATACATATATAGTTTCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11491:1577..2546-

>mRNA_L-elsbetiae_contig11491.1310.1 ID=mRNA_L-elsbetiae_contig11491.1310.1|Name=mRNA_L-elsbetiae_contig11491.1310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig11491:1577..2546- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGTGCTGCATGTATGGAGATTCTTGCGGTACTAACGCTCTTCTCCT
GGAATACACCAATGCAGTGCTGCATGTATGGAGATTCTTGCGGTACTAAC
GCTCTTCTCCTGGAATACACCAGCTGCAAGACGGAACTTGTCGCGGACGA
CTGTGAGATAACCGACCTCTGCAACGGTAGCATGGGCTCATTCGTCCGCT
TCGGTGCCACCACTGTCGGTGCTGCTGCTGCCGCGGGCATTCTCCTCGTC
TCTACTTTGGGTGTGCTCCTCTAAGCTGCAAGACGGAACTTGTCGCGGAC
GACTGTGAGATAACCGACCTCTGCAACGGTAGCATGGGCTCATTCGTCCG
CTTCGGTGCCACCACTGTCGGTGCTGCTGCTGCCGCGGGCATTCTCCTCG
TCTCTACTTTGGGTGTGCTCCTCTAA
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