mRNA_L-elsbetiae_contig11486.1305.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11486.1305.1
Unique NamemRNA_L-elsbetiae_contig11486.1305.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11486.1305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11486contigL-elsbetiae_contig11486:3751..4314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size565
Cds size369
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815354.7864788-UTR-L-elsbetiae_contig11486:3750..39451622815354.7864788-UTR-L-elsbetiae_contig11486:3750..3945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11486 3751..3945 +
1691682857.2179792-UTR-L-elsbetiae_contig11486:3750..39451691682857.2179792-UTR-L-elsbetiae_contig11486:3750..3945Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11486 3751..3945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815354.801736-CDS-L-elsbetiae_contig11486:3945..43141622815354.801736-CDS-L-elsbetiae_contig11486:3945..4314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11486 3946..4314 +
1691682857.2304888-CDS-L-elsbetiae_contig11486:3945..43141691682857.2304888-CDS-L-elsbetiae_contig11486:3945..4314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11486 3946..4314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11486.1305.1prot_L-elsbetiae_contig11486.1305.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11486 3946..4314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11486.1305.1

>prot_L-elsbetiae_contig11486.1305.1 ID=prot_L-elsbetiae_contig11486.1305.1|Name=mRNA_L-elsbetiae_contig11486.1305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
MDKAPPAQGTQHLRLLAPLHGRTTLLPVGTVPRVDNAAGSSSAVARSRVD
DTALSPAATGTLGGAGAEDKSPASEFGTIATLTRKAIQTFDGLLAAEDGA
RKRALSFPSSQGSPRDSEDDDSQ
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mRNA from alignment at L-elsbetiae_contig11486:3751..4314+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11486.1305.1 ID=mRNA_L-elsbetiae_contig11486.1305.1|Name=mRNA_L-elsbetiae_contig11486.1305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig11486:3751..4314+ (Laminarionema elsbetiae ELsaHSoW15)
GTAGAACTCTGATTGGTCAAGGTGCCTTTTTGGCGCCGTCAGAAAGTGAA
TGCTGGAGAATTCATTTAAAGTCTCGGGGGAATTCAAATTAACGCTCGAG
AATCATCATTATTTTGATGGGGTCACGAGAGAGCCAGCACACATCTCAAA
GCACTACACCCACCAGCACGCACACCGCCCGATACTGCATCCGCCATGGA
TAAAGCCCCCCCCGCCCAGGGCACCCAGCACCTCAGACTGCTGGCCCCAC
TGCACGGGCGCACCACCCTTCTGCCGGTTGGCACCGTGCCGCGGGTGGAC
AACGCAGCAGGGTCGAGCTCGGCGGTAGCACGCAGCAGGGTTGATGACAC
AGCCCTCTCTCCTGCCGCAACGGGCACCCTTGGTGGCGCCGGAGCAGAAG
ACAAGTCCCCTGCAAGTGAATTCGGGACCATCGCTACACTGACCCGCAAG
GCTATACAAACTTTCGACGGCTTGCTTGCTGCAGAAGATGGTGCTCGAAA
GAGGGCGTTGTCGTTCCCCAGCAGCCAAGGATCGCCACGAGACTCCGAAG
ATGACGATAGCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11486:3751..4314+

>mRNA_L-elsbetiae_contig11486.1305.1 ID=mRNA_L-elsbetiae_contig11486.1305.1|Name=mRNA_L-elsbetiae_contig11486.1305.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig11486:3751..4314+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATAAAGCCCCCCCCGCCCAGGGCACCCAGCACCTCAGACTGCTGGC
CCCACTGCACGGGCGCACCACCCTTCTGCCGGTTGGCACCGTGCCGCGGG
TGGACAACGCAGCAGGGTCGAGCTCGGCGGTAGCACGCAGCAGGGTTGAT
GACACAGCCCTCTCTCCTGCCGCAACGGGCACCCTTGGTGGCGCCGGAGC
AGAAGACAAGTCCCCTGCAAGTGAATTCGGGACCATCGCTACACTGACCC
GCAAGGCTATACAAACTTTCGACGGCTTGCTTGCTGCAGAAGATGGTGCT
CGAAAGAGGGCGTTGTCGTTCCCCAGCAGCCAAGGATCGCCACGAGACTC
CGAAGATGACGATAGCCAGATGGATAAAGCCCCCCCCGCCCAGGGCACCC
AGCACCTCAGACTGCTGGCCCCACTGCACGGGCGCACCACCCTTCTGCCG
GTTGGCACCGTGCCGCGGGTGGACAACGCAGCAGGGTCGAGCTCGGCGGT
AGCACGCAGCAGGGTTGATGACACAGCCCTCTCTCCTGCCGCAACGGGCA
CCCTTGGTGGCGCCGGAGCAGAAGACAAGTCCCCTGCAAGTGAATTCGGG
ACCATCGCTACACTGACCCGCAAGGCTATACAAACTTTCGACGGCTTGCT
TGCTGCAGAAGATGGTGCTCGAAAGAGGGCGTTGTCGTTCCCCAGCAGCC
AAGGATCGCCACGAGACTCCGAAGATGACGATAGCCAG
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