mRNA_L-elsbetiae_contig1148.1298.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1148.1298.1
Unique NamemRNA_L-elsbetiae_contig1148.1298.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1148.1298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1148contigL-elsbetiae_contig1148:15245..15654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size410
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815353.9411917-CDS-L-elsbetiae_contig1148:15244..155591622815353.9411917-CDS-L-elsbetiae_contig1148:15244..15559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1148 15245..15559 +
1691682856.667688-CDS-L-elsbetiae_contig1148:15244..155591691682856.667688-CDS-L-elsbetiae_contig1148:15244..15559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1148 15245..15559 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815353.9559636-UTR-L-elsbetiae_contig1148:15559..156541622815353.9559636-UTR-L-elsbetiae_contig1148:15559..15654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1148 15560..15654 +
1691682856.6764872-UTR-L-elsbetiae_contig1148:15559..156541691682856.6764872-UTR-L-elsbetiae_contig1148:15559..15654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1148 15560..15654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1148.1298.1prot_L-elsbetiae_contig1148.1298.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1148 15245..15559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1148.1298.1

>prot_L-elsbetiae_contig1148.1298.1 ID=prot_L-elsbetiae_contig1148.1298.1|Name=mRNA_L-elsbetiae_contig1148.1298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MARVLWRYAWRQQNTQPLAFQIPVVHTYVAAAHGTSRVEFYHATLNAPER
NTTQARHILHSALASRRNHRECEDQAPPPPGPTCPKHQSTKRQMGVHCPT
ILAS*
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mRNA from alignment at L-elsbetiae_contig1148:15245..15654+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1148.1298.1 ID=mRNA_L-elsbetiae_contig1148.1298.1|Name=mRNA_L-elsbetiae_contig1148.1298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=410bp|location=Sequence derived from alignment at L-elsbetiae_contig1148:15245..15654+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCGCGTTCTATGGAGGTATGCTTGGAGACAACAAAACACCCAGCC
GCTTGCGTTCCAAATTCCCGTCGTACATACATACGTAGCTGCGGCGCACG
GCACTTCGCGTGTCGAATTTTACCACGCCACGCTAAATGCACCTGAAAGG
AACACAACTCAGGCAAGGCATATCTTGCATTCGGCCCTCGCTTCCCGAAG
AAACCACCGAGAGTGCGAGGATCAGGCGCCACCACCGCCGGGCCCCACTT
GTCCGAAACATCAGAGTACCAAAAGGCAGATGGGCGTCCATTGCCCAACC
ATTCTTGCATCTTGAACTCCGTCAAACCAGACAGTAAAATGCGCCGTTTT
ATGTTTACCCTCCATGTCTCATGTCGAATCTACCCTGTGGTACGTGGACG
CAGGTGTTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1148:15245..15654+

>mRNA_L-elsbetiae_contig1148.1298.1 ID=mRNA_L-elsbetiae_contig1148.1298.1|Name=mRNA_L-elsbetiae_contig1148.1298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig1148:15245..15654+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCGCGTTCTATGGAGGTATGCTTGGAGACAACAAAACACCCAGCC
GCTTGCGTTCCAAATTCCCGTCGTACATACATACGTAGCTGCGGCGCACG
GCACTTCGCGTGTCGAATTTTACCACGCCACGCTAAATGCACCTGAAAGG
AACACAACTCAGGCAAGGCATATCTTGCATTCGGCCCTCGCTTCCCGAAG
AAACCACCGAGAGTGCGAGGATCAGGCGCCACCACCGCCGGGCCCCACTT
GTCCGAAACATCAGAGTACCAAAAGGCAGATGGGCGTCCATTGCCCAACC
ATTCTTGCATCTTGAATGGCCCGCGTTCTATGGAGGTATGCTTGGAGACA
ACAAAACACCCAGCCGCTTGCGTTCCAAATTCCCGTCGTACATACATACG
TAGCTGCGGCGCACGGCACTTCGCGTGTCGAATTTTACCACGCCACGCTA
AATGCACCTGAAAGGAACACAACTCAGGCAAGGCATATCTTGCATTCGGC
CCTCGCTTCCCGAAGAAACCACCGAGAGTGCGAGGATCAGGCGCCACCAC
CGCCGGGCCCCACTTGTCCGAAACATCAGAGTACCAAAAGGCAGATGGGC
GTCCATTGCCCAACCATTCTTGCATCTTGA
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