mRNA_L-elsbetiae_contig1147.1292.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1147.1292.1 vs. uniprot
Match: D7FVP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP2_ECTSI) HSP 1 Score: 157 bits (397), Expect = 1.270e-43 Identity = 85/103 (82.52%), Postives = 93/103 (90.29%), Query Frame = 2 Query: 263 DDIDLSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDSQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 571 DDIDLSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVD Q V+L+DE+V+ELA+ G MD STSKKSKGL D+ DV GALSGGAHIVKR+DGT+ Sbjct: 78 DDIDLSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEVQELAQSGMMDQDSTSKKSKGLFSDMKDVLGALSGGAHIVKRDDGTV 180
BLAST of mRNA_L-elsbetiae_contig1147.1292.1 vs. uniprot
Match: A0A835ZCH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH3_9STRA) HSP 1 Score: 114 bits (284), Expect = 8.470e-28 Identity = 61/104 (58.65%), Postives = 80/104 (76.92%), Query Frame = 2 Query: 260 GDDIDLSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDSQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 571 G DI+L+ A+ NAR NL G SPGAGL +A +QADAA+ADLI+TSVD + +SL DED+ EL K G MD STS++S+G GD++DVF AL GGAHI +++DG + Sbjct: 6 GGDIELAKALDNARRNLEEGKSPGAGLATAEEQADAAYADLILTSVDQKHLSLGDEDLAELTKAGMMDSKSTSRRSRGWAGDIADVFNALKGGAHIQRQKDGRI 109
BLAST of mRNA_L-elsbetiae_contig1147.1292.1 vs. uniprot
Match: C1DZJ8_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZJ8_MICCC) HSP 1 Score: 99.8 bits (247), Expect = 5.720e-22 Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 2 Query: 272 DLSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDSQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 571 D+S AM NARA +G SPGAGL A QA+AAFAD+I T+VD +L+ E++ +L++GG MD+ S SKKS G+LGD+ D+FGALS GAHIVK++ G + Sbjct: 45 DISKAMENARACEKSGLSPGAGLADADAQAEAAFADMINTTVDVTGEALDSEELSQLSRGGKMDEESKSKKSGGILGDVRDLFGALSKGAHIVKQKGGRV 144
BLAST of mRNA_L-elsbetiae_contig1147.1292.1 vs. uniprot
Match: C1MJA6_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MJA6_MICPC) HSP 1 Score: 90.1 bits (222), Expect = 4.050e-18 Identity = 52/99 (52.53%), Postives = 73/99 (73.74%), Query Frame = 2 Query: 275 LSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDSQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 571 ++++MA ARA A+G SPGAGL SA DQA+AAFAD+I T+VD +L+ + LA+GG MD STS+KS G+ D+ D+FGAL GAHIV++++G + Sbjct: 69 IAASMAAARACEASGMSPGAGLSSAEDQAEAAFADMINTTVDVTGEALDADARARLAEGGRMDGASTSRKSGGMWSDVRDLFGALGKGAHIVRQKNGRV 167
BLAST of mRNA_L-elsbetiae_contig1147.1292.1 vs. uniprot
Match: A0A7R9XNM3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9XNM3_9CHLO) HSP 1 Score: 84.7 bits (208), Expect = 1.200e-15 Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 2 Query: 275 LSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVD-SQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 571 L AM+NAR N G SPGAGL +A +QA+AAFADLI TS+D + +L ++ EL++GG MD+ S ++KS GLL D+ +F AL GAHIVK++DG + Sbjct: 119 LEFAMSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDGRV 218
BLAST of mRNA_L-elsbetiae_contig1147.1292.1 vs. uniprot
Match: A0A830HV35_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HV35_9CHLO) HSP 1 Score: 83.2 bits (204), Expect = 7.440e-15 Identity = 50/96 (52.08%), Postives = 69/96 (71.88%), Query Frame = 2 Query: 287 MANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVD-SQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 571 M+NAR N G SPGAGL +A +QA+AAFADLI TS+D + +L ++ EL++GG MD+ S ++KS GLL D+ +F AL GAHIVK++DG + Sbjct: 71 MSNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDGRV 166
BLAST of mRNA_L-elsbetiae_contig1147.1292.1 vs. uniprot
Match: D6PJB7_9ZZZZ (Uncharacterized protein n=1 Tax=uncultured organism MedDCM-OCT-S08-C998 TaxID=743643 RepID=D6PJB7_9ZZZZ) HSP 1 Score: 78.6 bits (192), Expect = 1.490e-14 Identity = 47/103 (45.63%), Postives = 68/103 (66.02%), Query Frame = 2 Query: 275 LSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDSQSVSLE--DEDVRELAKGGSMDDTSTSK----KSKGLLGDLSDVFGALSGGAHIVKREDG 565 + A+A A+ N + SPGAG+E AF+ A+AA+ADLI+TS+D + + E DED+ L+KGG+M + + K G +GDL + AL+GGAHIVK E+G Sbjct: 1 MEQALAQAKENRDSNQSPGAGVEDAFEAAEAAYADLILTSIDQRELGEELGDEDLAALSKGGTMWEDGAKEIRNDKKAGFMGDLFNALSALAGGAHIVKDENG 103
BLAST of mRNA_L-elsbetiae_contig1147.1292.1 vs. uniprot
Match: A0A7S2FA39_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FA39_9CHLO) HSP 1 Score: 66.6 bits (161), Expect = 2.770e-9 Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 2 Query: 275 LSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVD-SQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGAL 529 L AM+NAR N G SPGAGL +A +QA+AAFADLI TS+D + +L ++ EL++GG MD+ S ++KS GLL D+ +F AL Sbjct: 122 LEFAMSNARKNSLEGLSPGAGLMTAEEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEAL 207
BLAST of mRNA_L-elsbetiae_contig1147.1292.1 vs. uniprot
Match: A0A7S3BNN4_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BNN4_9VIRI) HSP 1 Score: 52.8 bits (125), Expect = 4.640e-5 Identity = 40/93 (43.01%), Postives = 61/93 (65.59%), Query Frame = 2 Query: 263 DDIDLSSAMANARANLAAGTSPGAGLESAFDQADAAFADLIVTSVDSQSVSLEDEDVRELA-KGGSMDDTSTSKKSKGLLGDLSDVFGALSGG 538 ++ L +++A+A A L AG SPGAGL++A QA+AA+ADLI+T + ++ L+ +++ELA +GG MD +KG L DL+ AL GG Sbjct: 43 EEASLLASLADAEACLDAGVSPGAGLDTAEAQAEAAYADLILTGIQTREEELDGAELKELAARGGGMDGA----PAKGGLWDLAK---ALVGG 128 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1147.1292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1147.1292.1 >prot_L-elsbetiae_contig1147.1292.1 ID=prot_L-elsbetiae_contig1147.1292.1|Name=mRNA_L-elsbetiae_contig1147.1292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp MMVRHSPLLLVAAALTFSADSRCSAFSGGTRPVRAWKIGDRRRQVPSHPCback to top mRNA from alignment at L-elsbetiae_contig1147:24810..27444- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1147.1292.1 ID=mRNA_L-elsbetiae_contig1147.1292.1|Name=mRNA_L-elsbetiae_contig1147.1292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2635bp|location=Sequence derived from alignment at L-elsbetiae_contig1147:24810..27444- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1147:24810..27444- >mRNA_L-elsbetiae_contig1147.1292.1 ID=mRNA_L-elsbetiae_contig1147.1292.1|Name=mRNA_L-elsbetiae_contig1147.1292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig1147:24810..27444- (Laminarionema elsbetiae ELsaHSoW15)back to top |