mRNA_L-elsbetiae_contig1147.1291.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1147.1291.1
Unique NamemRNA_L-elsbetiae_contig1147.1291.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1147.1291.1 vs. uniprot
Match: D7FVP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP2_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.460e-33
Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:    1 GTSPGAGLESAFDQADAAFADLIVTSVDSQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 255
            GTSPGAGLESAFDQADAAFADLIVTSVD Q V+L+DE+V+ELA+ G MD  STSKKSKGL  D+ DV GALSGGAHIVKR+DGT+
Sbjct:   96 GTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEVQELAQSGMMDQDSTSKKSKGLFSDMKDVLGALSGGAHIVKRDDGTV 180
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BLAST of mRNA_L-elsbetiae_contig1147.1291.1 vs. uniprot
Match: A0A835ZCH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.490e-23
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 GTSPGAGLESAFDQADAAFADLIVTSVDSQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 255
            G SPGAGL +A +QADAA+ADLI+TSVD + +SL DED+ EL K G MD  STS++S+G  GD++DVF AL GGAHI +++DG +
Sbjct:   25 GKSPGAGLATAEEQADAAYADLILTSVDQKHLSLGDEDLAELTKAGMMDSKSTSRRSRGWAGDIADVFNALKGGAHIQRQKDGRI 109
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BLAST of mRNA_L-elsbetiae_contig1147.1291.1 vs. uniprot
Match: C1DZJ8_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZJ8_MICCC)

HSP 1 Score: 89.7 bits (221), Expect = 4.250e-19
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 GTSPGAGLESAFDQADAAFADLIVTSVDSQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 255
            G SPGAGL  A  QA+AAFAD+I T+VD    +L+ E++ +L++GG MD+ S SKKS G+LGD+ D+FGALS GAHIVK++ G +
Sbjct:   60 GLSPGAGLADADAQAEAAFADMINTTVDVTGEALDSEELSQLSRGGKMDEESKSKKSGGILGDVRDLFGALSKGAHIVKQKGGRV 144
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BLAST of mRNA_L-elsbetiae_contig1147.1291.1 vs. uniprot
Match: C1MJA6_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MJA6_MICPC)

HSP 1 Score: 83.2 bits (204), Expect = 2.350e-16
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    1 GTSPGAGLESAFDQADAAFADLIVTSVDSQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 255
            G SPGAGL SA DQA+AAFAD+I T+VD    +L+ +    LA+GG MD  STS+KS G+  D+ D+FGAL  GAHIV++++G +
Sbjct:   83 GMSPGAGLSSAEDQAEAAFADMINTTVDVTGEALDADARARLAEGGRMDGASTSRKSGGMWSDVRDLFGALGKGAHIVRQKNGRV 167
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BLAST of mRNA_L-elsbetiae_contig1147.1291.1 vs. uniprot
Match: D6PJB7_9ZZZZ (Uncharacterized protein n=1 Tax=uncultured organism MedDCM-OCT-S08-C998 TaxID=743643 RepID=D6PJB7_9ZZZZ)

HSP 1 Score: 73.9 bits (180), Expect = 1.640e-13
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    7 SPGAGLESAFDQADAAFADLIVTSVDSQSVSLE--DEDVRELAKGGSMDDTSTSK----KSKGLLGDLSDVFGALSGGAHIVKREDG 249
            SPGAG+E AF+ A+AA+ADLI+TS+D + +  E  DED+  L+KGG+M +    +    K  G +GDL +   AL+GGAHIVK E+G
Sbjct:   17 SPGAGVEDAFEAAEAAYADLILTSIDQRELGEELGDEDLAALSKGGTMWEDGAKEIRNDKKAGFMGDLFNALSALAGGAHIVKDENG 103
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BLAST of mRNA_L-elsbetiae_contig1147.1291.1 vs. uniprot
Match: A0A7R9XNM3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9XNM3_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 2.660e-13
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    1 GTSPGAGLESAFDQADAAFADLIVTSVD-SQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 255
            G SPGAGL +A +QA+AAFADLI TS+D +   +L   ++ EL++GG MD+ S ++KS GLL D+  +F AL  GAHIVK++DG +
Sbjct:  133 GLSPGAGLMTAQEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDGRV 218
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BLAST of mRNA_L-elsbetiae_contig1147.1291.1 vs. uniprot
Match: A0A830HV35_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HV35_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 4.290e-13
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    1 GTSPGAGLESAFDQADAAFADLIVTSVD-SQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGALSGGAHIVKREDGTL 255
            G SPGAGL +A +QA+AAFADLI TS+D +   +L   ++ EL++GG MD+ S ++KS GLL D+  +F AL  GAHIVK++DG +
Sbjct:   81 GLSPGAGLMTAQEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDGRV 166
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BLAST of mRNA_L-elsbetiae_contig1147.1291.1 vs. uniprot
Match: A0A7S2FA39_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FA39_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 8.800e-7
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 GTSPGAGLESAFDQADAAFADLIVTSVD-SQSVSLEDEDVRELAKGGSMDDTSTSKKSKGLLGDLSDVFGAL 213
            G SPGAGL +A +QA+AAFADLI TS+D +   +L   ++ EL++GG MD+ S ++KS GLL D+  +F AL
Sbjct:  136 GLSPGAGLMTAEEQAEAAFADLINTSLDGADRNALTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEAL 207
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1147.1291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FVP2_ECTSI1.460e-3378.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCH3_9STRA4.490e-2360.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1DZJ8_MICCC4.250e-1956.47Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
C1MJA6_MICPC2.350e-1654.12Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
D6PJB7_9ZZZZ1.640e-1349.43Uncharacterized protein n=1 Tax=uncultured organis... [more]
A0A7R9XNM3_9CHLO2.660e-1352.33Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
A0A830HV35_9CHLO4.290e-1352.33Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A7S2FA39_9CHLO8.800e-751.39Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1147contigL-elsbetiae_contig1147:24810..25811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size686
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1147.1291.1prot_L-elsbetiae_contig1147.1291.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1147 24824..25177 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815353.2097492-UTR-L-elsbetiae_contig1147:24809..248231622815353.2097492-UTR-L-elsbetiae_contig1147:24809..24823Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1147 24810..24823 -
1691682856.2681644-UTR-L-elsbetiae_contig1147:24809..248231691682856.2681644-UTR-L-elsbetiae_contig1147:24809..24823Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1147 24810..24823 -
1622815353.2345767-UTR-L-elsbetiae_contig1147:25177..253841622815353.2345767-UTR-L-elsbetiae_contig1147:25177..25384Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1147 25178..25384 -
1691682856.2871714-UTR-L-elsbetiae_contig1147:25177..253841691682856.2871714-UTR-L-elsbetiae_contig1147:25177..25384Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1147 25178..25384 -
1622815353.2470775-UTR-L-elsbetiae_contig1147:25700..258111622815353.2470775-UTR-L-elsbetiae_contig1147:25700..25811Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1147 25701..25811 -
1691682856.2964196-UTR-L-elsbetiae_contig1147:25700..258111691682856.2964196-UTR-L-elsbetiae_contig1147:25700..25811Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1147 25701..25811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815353.2218719-CDS-L-elsbetiae_contig1147:24823..251771622815353.2218719-CDS-L-elsbetiae_contig1147:24823..25177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1147 24824..25177 -
1691682856.2776904-CDS-L-elsbetiae_contig1147:24823..251771691682856.2776904-CDS-L-elsbetiae_contig1147:24823..25177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1147 24824..25177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1147.1291.1

>prot_L-elsbetiae_contig1147.1291.1 ID=prot_L-elsbetiae_contig1147.1291.1|Name=mRNA_L-elsbetiae_contig1147.1291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MCMFFCLFRPSSSVAIALTRRKKCLHGIKGSSCAWVLPTRLVIRVLSPYD
FSQEKIKVSPCPVCGFEAIFVSRPLDRERPKLSKPTLLATCTRGIHTATS
RNSLIQLSLQCFDSCSC*
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mRNA from alignment at L-elsbetiae_contig1147:24810..25811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1147.1291.1 ID=mRNA_L-elsbetiae_contig1147.1291.1|Name=mRNA_L-elsbetiae_contig1147.1291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig1147:24810..25811- (Laminarionema elsbetiae ELsaHSoW15)
GGCACTTCGCCAGGCGCCGGGCTTGAATCGGCGTTCGACCAGGCTGACGC
GGCGTTTGCGGATCTGATCGTGACCAGCGTGGATAGCCAGAGTGTCAGCT
TGGAGGATGAGGTGGGCTTTCTACGCGCTCATGGGCACAATAATGTCACT
TCCAATCTACACATTTCTGGAGTCACGCTGGTGGCCCAAGCAAGTCAAGA
CCGGCGGCAGGCACTGCTCTGTAGCTTATTTACTGCCGCGGTAGCAGCAA
GACGAGTTTGGTCGTGGCGATGCTGTCCCGAATGTGTACATCAGGAACAA
CCTTTCGCTGTTTTCGGGCGGAACGCGCCATTTTTTTTGTGTTAATGGCA
TGTTGCCTCGCTGACTGCCTCGAATAGATATACGGCCCTTTTTGTTTCGA
CGTTTTCCCTCTTTCCTTTGCGACAAGGATGTCCGAGAGCTCGCGAAAGG
CGGCAGCATGGATGACACGAGCACGTCGAAAAAGAGCAAGGGGCTTTTGG
GCGACTTGTCGGATGTCTTCGGGGCGCTCAGCGGAGGAGCTCACATCGTC
AAGCGCGAGGACGGGACCTTGTGACACACATTTGTCATCCCGCCGCCGTA
TCCATGTGTGTGCGGTCTCTCCGCTCGTTGGCTGATGTGCATGTTTTTTT
GTCTCTTCAGACCTTCCAGCAGTGTTGCGATTGCCTTAACAAGGCGAAAA
AAATGTTTGCACGGCATCAAGGGCTCGAGTTGCGCTTGGGTGCTACCTAC
AAGGCTTGTAATACGTGTTTTGTCACCCTACGATTTTTCTCAGGAAAAGA
TTAAAGTTTCCCCCTGCCCGGTGTGTGGTTTCGAGGCGATTTTTGTGAGT
CGGCCCCTTGATCGCGAGCGTCCGAAGCTATCAAAACCCACGCTCCTCGC
CACATGTACCCGGGGCATACACACGGCTACCTCGCGAAACTCTCTGATTC
AGCTCAGCTTGCAGTGCTTCGACAGCTGCAGCTGCTGAAAAGCCACATTT
TG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1147:24810..25811-

>mRNA_L-elsbetiae_contig1147.1291.1 ID=mRNA_L-elsbetiae_contig1147.1291.1|Name=mRNA_L-elsbetiae_contig1147.1291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig1147:24810..25811- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCATGTTTTTTTGTCTCTTCAGACCTTCCAGCAGTGTTGCGATTGC
CTTAACAAGGCGAAAAAAATGTTTGCACGGCATCAAGGGCTCGAGTTGCG
CTTGGGTGCTACCTACAAGGCTTGTAATACGTGTTTTGTCACCCTACGAT
TTTTCTCAGGAAAAGATTAAAGTTTCCCCCTGCCCGGTGTGTGGTTTCGA
GGCGATTTTTGTGAGTCGGCCCCTTGATCGCGAGCGTCCGAAGCTATCAA
AACCCACGCTCCTCGCCACATGTACCCGGGGCATACACACGGCTACCTCG
CGAAACTCTCTGATTCAGCTCAGCTTGCAGTGCTTCGACAGCTGCAGCTG
CTGAATGTGCATGTTTTTTTGTCTCTTCAGACCTTCCAGCAGTGTTGCGA
TTGCCTTAACAAGGCGAAAAAAATGTTTGCACGGCATCAAGGGCTCGAGT
TGCGCTTGGGTGCTACCTACAAGGCTTGTAATACGTGTTTTGTCACCCTA
CGATTTTTCTCAGGAAAAGATTAAAGTTTCCCCCTGCCCGGTGTGTGGTT
TCGAGGCGATTTTTGTGAGTCGGCCCCTTGATCGCGAGCGTCCGAAGCTA
TCAAAACCCACGCTCCTCGCCACATGTACCCGGGGCATACACACGGCTAC
CTCGCGAAACTCTCTGATTCAGCTCAGCTTGCAGTGCTTCGACAGCTGCA
GCTGCTGA
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