mRNA_L-elsbetiae_contig1146.1278.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1146.1278.1
Unique NamemRNA_L-elsbetiae_contig1146.1278.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1146.1278.1 vs. uniprot
Match: A0A6H5L634_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L634_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.010e-19
Identity = 51/75 (68.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    1 HDPSAATLPSEQEINAMFLEVMESHG-----------VTKMEQQDALQHLSAEQKWETVVTERAKAKGSGSRRGS 192
            +D S   LPSEQEIN+MFLEVMESHG           V  M+QQDAL+HL+AEQKWETVVTERAK KG GSRRGS
Sbjct:   39 YDASVVPLPSEQEINSMFLEVMESHGCPFQGKIFNARVPTMQQQDALKHLTAEQKWETVVTERAKTKGGGSRRGS 113
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1146.1278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L634_9PHAE2.010e-1968.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1146contigL-elsbetiae_contig1146:5..2066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size193
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815352.5293682-CDS-L-elsbetiae_contig1146:5..1201622815352.5293682-CDS-L-elsbetiae_contig1146:5..120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1146 6..120 -
1691682855.8069394-CDS-L-elsbetiae_contig1146:5..1201691682855.8069394-CDS-L-elsbetiae_contig1146:5..120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1146 6..120 -
1622815352.5409875-CDS-L-elsbetiae_contig1146:1989..20661622815352.5409875-CDS-L-elsbetiae_contig1146:1989..2066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1146 1990..2066 -
1691682855.8176725-CDS-L-elsbetiae_contig1146:1989..20661691682855.8176725-CDS-L-elsbetiae_contig1146:1989..2066Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1146 1990..2066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1146.1278.1prot_L-elsbetiae_contig1146.1278.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1146 6..2066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1146.1278.1

>prot_L-elsbetiae_contig1146.1278.1 ID=prot_L-elsbetiae_contig1146.1278.1|Name=mRNA_L-elsbetiae_contig1146.1278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
HDPSAATLPSEQEINAMFLEVMESHGVTKMEQQDALQHLSAEQKWETVVT
ERAKAKGSGSRRGS
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mRNA from alignment at L-elsbetiae_contig1146:5..2066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1146.1278.1 ID=mRNA_L-elsbetiae_contig1146.1278.1|Name=mRNA_L-elsbetiae_contig1146.1278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2062bp|location=Sequence derived from alignment at L-elsbetiae_contig1146:5..2066- (Laminarionema elsbetiae ELsaHSoW15)
CACGACCCGTCCGCGGCGACTCTCCCTTCGGAGCAAGAGATCAACGCCAT
GTTCCTGGAAGTCATGGAAAGTCACGGGTGAGTGCGCGGAGAGGACGTGG
GTGATGAGGCAACTGCAGTGGTTGGTACGGGGGCGGCGCAGGGTGCAGGG
CGTAAAGAGGGAGACCGTGGGGGGTTAGGAGGAGTGGCATGGGGGGGGGG
GGGGGGGGGGGTTGTTGCTTAACCCCTAAAATATGTACTTGAAGTATTTA
GCTACCGCCCAACAGTCGGGCGCCCTTTCGCGTTTCGCCATACTCACATG
CATCACTCTCCGTAAGGGTTAGGGGGCACTGCTGTATGTATTGCACCCCC
TCCCGTTTTCGCTCCCTGTTGTGAAAATACGCTCGTTTTGGCGTGGCTCG
TTGAGGCGGGCGGGAGGCAAAGGCCAGGAAAGCGAAAACAGATTTGCGTG
TAGACCCGCTGGCAAACCCTGTGTGCTAGCTAGCTGCGGGGGAAAGCGAA
GAGTGTCTATGCGTTTTCTTACTGAGCATCGACTTCGCTATGAAACTGGT
TGATTGGGTGGGTTGCCAATGAAAAAGCGTCAGCGTTTAGCGGGCAAAAT
ACCTAACAGCGCTCTCATAAGTGTTGGGACCCCTTGAGAAGGGTTTCTCA
CAAAACATCTTCCACTTGTTTATACCGTGGGTGACACAAGATACCACACC
CCCTCGACAGACTTTCAAAGCTCGATTACTCCTCAGCAAGAAGAGTGCCA
GTGCCGAAAGAGGTGGTATTGGAAAGATCTATAATCGAGGGCTGTCCGAA
CATGTGTTGCTTGGTGCTGGCACCTTCTTCGTTACGGAGTAATGAAGGTC
TAAAGTTCGGTCCAGGGGGTGTGGTACCTTGTGTCACCTACGGTATGCCC
TTTCAACTACTTTTCCTGGTGGACATGTTGATGGCCGTTTCTCTATCGTC
GTCCCTAGGACGGCCCTGTTTTCGCTGTGTGTGGGTGGGGGGGGGGGGGG
GGGCGCGCGTGCGCGCGCGCGCGCATTTTTTACCCACCCATCGGCCCCCT
GCTGTCACGGGGGGCACAGTATTGTTGCTCTACGTAAAAACTAAGTAGAC
TGTACCGCTGCACCATGTTGACCGGAGGCGTGTTCGCATGTTCAAGAGTG
TTAGGAAGCGGAGTGAGAGCCAGAGAAAAAGGTGCTCTGATGCATCAAAA
AGAGGGGCAGGGAAAGTGGGATCCCGCTTGTGCTCTTGGGGGATCGATGG
ATGGGAGAGCCAACGGCGAGCAGGGGCACAGGAAGAGAGCGGCGCCTCCG
TGTACTCGCGAGGTTGCGTACCGCTCGGCCGAATGCTTCAGGCACTCCCT
TCTTTAGCATCAATAATCCTTGCCGTGGCTTATTTCGTCTGGACGGTAGG
CAGGCCGAGGGGCAGGCGGACAGCCGTGCAGGCTCGAGGAATAGTCGTCA
GTTCTGCTGCTTGTTGTGGTGGTAGTGGTGGTGGTGATGGTTGTTGGTGT
CGGTGTTGTTGTAGTTGTTGTTGCTTCTGTTTTATTGTTGTTGTGGGAGT
TGTTTGTTTTGGGTTATACACACTGATAAGTTAGCTTTTTACTGCTACAT
AGGAGTACATAACACGATGTTTTGCAGATGGTTCAAACCCACAGGTGACC
GACCCAACCCTAGCCCTAACCCTAATCCGCCACCGACGTCCACCTGGGGC
CGTAGGGCCGGGAAATCGCCGCATTAACGCGGTCGCGTGGTCCGCAGGTC
AGAACGTGGTCTCCCGCACAACTGGTTTGACCAATCAGAGGGGGGGCAGG
CGTATACACGGCGTACAAGTATATAGTCCTAAAGGTTTACTACTGCTATC
AAGGTGTAAAAAACGATACCGAGCTGTTTTTTTGGTGTGCACGTATGTAT
CTCTTGCCTGACCTGAAAACAACATGGATCGAAAAACCACCATCAGGGTG
ACCAAGATGGAGCAGCAGGACGCGCTGCAGCACCTCTCGGCGGAGCAGAA
GTGGGAGACGGTCGTCACGGAGCGGGCAAAGGCCAAGGGGAGCGGCAGCC
GCAGAGGGTCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1146:5..2066-

>mRNA_L-elsbetiae_contig1146.1278.1 ID=mRNA_L-elsbetiae_contig1146.1278.1|Name=mRNA_L-elsbetiae_contig1146.1278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig1146:5..2066- (Laminarionema elsbetiae ELsaHSoW15)
CACGACCCGTCCGCGGCGACTCTCCCTTCGGAGCAAGAGATCAACGCCAT
GTTCCTGGAAGTCATGGAAAGTCACGGCACGACCCGTCCGCGGCGACTCT
CCCTTCGGAGCAAGAGATCAACGCCATGTTCCTGGAAGTCATGGAAAGTC
ACGGGGTGACCAAGATGGAGCAGCAGGACGCGCTGCAGCACCTCTCGGCG
GAGCAGAAGTGGGAGACGGTCGTCACGGAGCGGGCAAAGGCCAAGGGGAG
CGGCAGCCGCAGAGGGTCCGGTGACCAAGATGGAGCAGCAGGACGCGCTG
CAGCACCTCTCGGCGGAGCAGAAGTGGGAGACGGTCGTCACGGAGCGGGC
AAAGGCCAAGGGGAGCGGCAGCCGCAGAGGGTCC
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