mRNA_L-elsbetiae_contig11430.1249.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11430.1249.1
Unique NamemRNA_L-elsbetiae_contig11430.1249.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11430.1249.1 vs. uniprot
Match: D8LDA2_ECTSI (AMPKBI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDA2_ECTSI)

HSP 1 Score: 391 bits (1005), Expect = 1.000e-135
Identity = 184/188 (97.87%), Postives = 186/188 (98.94%), Query Frame = 3 
Query:    3 LVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRVKAAEANDQYSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYSTMPG 566
            LVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANR+K  EAND+YSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYSTMPG
Sbjct:   95 LVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRLKQLEANDKYSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYSTMPG 282
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BLAST of mRNA_L-elsbetiae_contig11430.1249.1 vs. uniprot
Match: A0A836CBZ2_9STRA (AMPKBI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ2_9STRA)

HSP 1 Score: 343 bits (881), Expect = 3.340e-117
Identity = 163/186 (87.63%), Postives = 173/186 (93.01%), Query Frame = 3 
Query:    3 LVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRVKAAEANDQYSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYSTM 560
            +VPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIH LK+GKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVS+F  YTG+++FE  R K  E +D YSQ TPDLDEYTKEPPPLPPHLRHIILNKNPP+NDP+ALP PQHVALNHLYCTAIKDGMMVLGMT+RYKQKFVTTVYYS M
Sbjct:   74 VVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHDLKRGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSEFEAYTGDDDFEQARNKP-EGDDLYSQFTPDLDEYTKEPPPLPPHLRHIILNKNPPSNDPTALPPPQHVALNHLYCTAIKDGMMVLGMTQRYKQKFVTTVYYSCM 258
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BLAST of mRNA_L-elsbetiae_contig11430.1249.1 vs. uniprot
Match: A0A835ZG75_9STRA (AMPKBI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG75_9STRA)

HSP 1 Score: 340 bits (873), Expect = 7.790e-116
Identity = 162/184 (88.04%), Postives = 171/184 (92.93%), Query Frame = 3 
Query:    3 LVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRVKAAEANDQYSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYS 554
            +VPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIH LKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFV YTGE+  E  R KA + ++ Y+Q TPDLDEYTKEPPPLPPHLRHIILNKNPP+NDP+ALP PQHVALNHLYCTAIKDGMMVLGMT+RYKQK VTTVYYS
Sbjct:   82 VVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHDLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVAYTGEDELEQARGKA-DGDELYNQFTPDLDEYTKEPPPLPPHLRHIILNKNPPSNDPTALPPPQHVALNHLYCTAIKDGMMVLGMTQRYKQKCVTTVYYS 264
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BLAST of mRNA_L-elsbetiae_contig11430.1249.1 vs. uniprot
Match: A0A7S4A5H3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5H3_9STRA)

HSP 1 Score: 315 bits (807), Expect = 6.680e-106
Identity = 145/183 (79.23%), Postives = 163/183 (89.07%), Query Frame = 3 
Query:    6 VPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRVKAAEANDQYSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYS 554
            VPTVFRWEHGGRQV++TGTFN+W  QIPMHRSGNDFTYIH LKKGKHAFKF+VDDEWRFAPDQPTVADIEGR+NNFIDV+DF  YTG+ENF   R    + +++Y++  PDLDEYTK+PPPLPPHLRHIILNK PP+ DP+ALPVPQHVALNHLYCTAIKDGMMVLG+T RY+QK  TTVYYS
Sbjct:   78 VPTVFRWEHGGRQVFVTGTFNDWTAQIPMHRSGNDFTYIHNLKKGKHAFKFVVDDEWRFAPDQPTVADIEGRINNFIDVTDFDAYTGDENFLERRGAVKDDDEKYTREIPDLDEYTKDPPPLPPHLRHIILNKAPPSGDPNALPVPQHVALNHLYCTAIKDGMMVLGVTLRYRQKACTTVYYS 260
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BLAST of mRNA_L-elsbetiae_contig11430.1249.1 vs. uniprot
Match: A0A7S2WI24_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WI24_9STRA)

HSP 1 Score: 312 bits (799), Expect = 5.540e-105
Identity = 145/186 (77.96%), Postives = 166/186 (89.25%), Query Frame = 3 
Query:    3 LVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRVKAAEANDQYSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYSTM 560
            LVPTVFRW+HGGRQV+ITGTFNNWEKQIPMHRSGNDFTYIH LKKGKHA+KFIVDDEWRFAPDQPTVADIEGR+NNFIDVSDFV YTG++N+ A    + + ++ +SQ  P+LDEYTKEPP LPPHLRHIILNK P  +D +ALP PQHVALNHLYCTAIKDGMMVLG T+RY++KFVT++YYS +
Sbjct:   58 LVPTVFRWDHGGRQVFITGTFNNWEKQIPMHRSGNDFTYIHNLKKGKHAYKFIVDDEWRFAPDQPTVADIEGRINNFIDVSDFVAYTGDDNYLATSGISTQ-DEVFSQVRPELDEYTKEPPQLPPHLRHIILNKVPSVSDTAALPTPQHVALNHLYCTAIKDGMMVLGATQRYREKFVTSIYYSNI 242
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BLAST of mRNA_L-elsbetiae_contig11430.1249.1 vs. uniprot
Match: A0A7S2BL33_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BL33_9STRA)

HSP 1 Score: 311 bits (797), Expect = 1.680e-104
Identity = 146/187 (78.07%), Postives = 164/187 (87.70%), Query Frame = 3 
Query:    3 LVPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFV-GYTGEENFEANRVKAAEANDQYSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYSTM 560
            LVPTVFRWEHGGRQVYITGTFNNWEKQI MHRSGNDFTYIH LKKGKHAFKFIVDDEWRFAPDQPTVADIEGR+NNFIDVSDF   YTG+++F     +    N+ ++Q  P+L+EYTKEPPPLPPHLRHIILNK PP ND +AL +PQHVALNHLYCTAIKDGMMVLG+T+RY++KFVT +YYS +
Sbjct:   68 LVPTVFRWEHGGRQVYITGTFNNWEKQIQMHRSGNDFTYIHNLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFIDVSDFQQAYTGDDDFLNPHKEPVVQNEIFTQVRPELEEYTKEPPPLPPHLRHIILNKVPPVNDAAALSIPQHVALNHLYCTAIKDGMMVLGITQRYREKFVTCIYYSNI 254
[Close]
BLAST of mRNA_L-elsbetiae_contig11430.1249.1 vs. uniprot
Match: A0A8J2WVW3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVW3_9STRA)

HSP 1 Score: 316 bits (810), Expect = 3.200e-104
Identity = 146/187 (78.07%), Postives = 164/187 (87.70%), Query Frame = 3 
Query:    6 VPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRVKAAEANDQYSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYSTMPG 566
            VPTVFRWEHGGRQV++TGTFN+W  QIPMHRSGNDFTYIH LKKGKHAFKF+VDDEWRFAPDQPTVADIEGR+NNFIDV+DF  YTG+ENF   R    + +++Y++  PDLDEYTK+PPPLPPHLRHIILNK PP+ DP+ALPVPQHVALNHLYCTAIKDGMMVLG+T RY+QK  TTVYYS   G
Sbjct:   78 VPTVFRWEHGGRQVFVTGTFNDWTAQIPMHRSGNDFTYIHNLKKGKHAFKFVVDDEWRFAPDQPTVADIEGRINNFIDVTDFDAYTGDENFLERRGAVKDDDEKYTREIPDLDEYTKDPPPLPPHLRHIILNKAPPSGDPNALPVPQHVALNHLYCTAIKDGMMVLGVTLRYRQKACTTVYYSVRNG 264
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BLAST of mRNA_L-elsbetiae_contig11430.1249.1 vs. uniprot
Match: A0A7S2LHN5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHN5_9STRA)

HSP 1 Score: 310 bits (794), Expect = 5.220e-103
Identity = 148/185 (80.00%), Postives = 159/185 (85.95%), Query Frame = 3 
Query:    6 VPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRVKAAEAND--QYSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYS 554
            VPTVFRWEHGGRQVY+TGTFN W KQIPMHRSGNDFTYIH LKKGKHAFKFIVDDEWRFAPDQPTVADIEGR+NNFIDVSDF  YTG+ +FE  +  +    D  ++S   PDLDEYTKEPPPLPPHLRHIILNK P   D +ALPVPQHVALNHLYCTAIKD MMVLG+T+RYK KFVTTVYYS
Sbjct:  138 VPTVFRWEHGGRQVYVTGTFNGWSKQIPMHRSGNDFTYIHNLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRINNFIDVSDFKAYTGDRDFEE-KANSGVVEDVGEFSHSMPDLDEYTKEPPPLPPHLRHIILNKPPQLADTAALPVPQHVALNHLYCTAIKDNMMVLGITQRYKTKFVTTVYYS 321
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BLAST of mRNA_L-elsbetiae_contig11430.1249.1 vs. uniprot
Match: F0YG62_AURAN (AMPKBI domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG62_AURAN)

HSP 1 Score: 321 bits (823), Expect = 6.950e-103
Identity = 150/183 (81.97%), Postives = 164/183 (89.62%), Query Frame = 3 
Query:    6 VPTVFRWEHGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRVKAAEANDQYSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYS 554
            VPTVFRWEHGGR VY+TGTFNNW+KQIPMHRSGNDFTYIH LKKGKHAFKF+VDDEWRFAPDQPTVADIEGR+NNFIDVSDF  YTG+ENF   R K+    + Y++  PDLDEYTK+PPPLPPHLRHIILNK PP+NDP+ALPVPQHVALNHLYCTAIKDGMMVLG+T RY+QK  TTVYYS
Sbjct:  500 VPTVFRWEHGGRVVYVTGTFNNWDKQIPMHRSGNDFTYIHNLKKGKHAFKFVVDDEWRFAPDQPTVADIEGRINNFIDVSDFDAYTGDENFLLRRTKSV-GGELYTREIPDLDEYTKDPPPLPPHLRHIILNKAPPSNDPNALPVPQHVALNHLYCTAIKDGMMVLGVTLRYRQKACTTVYYS 681
[Close]
BLAST of mRNA_L-elsbetiae_contig11430.1249.1 vs. uniprot
Match: A0A7S2AZ02_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZ02_9STRA)

HSP 1 Score: 305 bits (780), Expect = 9.720e-102
Identity = 143/187 (76.47%), Postives = 164/187 (87.70%), Query Frame = 3 
Query:    3 LVPTVFRWEHGG-RQVYITGTFNNWEKQIPMHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFIDVSDFVGYTGEENFEANRVKAAEANDQYSQCTPDLDEYTKEPPPLPPHLRHIILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVTTVYYSTM 560
            +VPTVFRW+HGG RQVYITGTFNNWEKQIPMHRSGNDFTYIH LKKGKHAFKFIVDDEWRFAPDQ T+ADIEGR+NNFIDVS+F  YTGE++F   +    +  D +SQ  P+L+EYTKEPPPLPPHLRHIILNK  P ND +AL +PQHVALNHLYCTAIKDGMMVLG+T+R+++KFVTT+YYS +
Sbjct:   81 VVPTVFRWDHGGGRQVYITGTFNNWEKQIPMHRSGNDFTYIHNLKKGKHAFKFIVDDEWRFAPDQQTIADIEGRINNFIDVSEFKAYTGEDDFMDPKA-LPDPEDSWSQVRPELEEYTKEPPPLPPHLRHIILNKVSPINDSTALSIPQHVALNHLYCTAIKDGMMVLGITQRFREKFVTTIYYSNI 266
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11430.1249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDA2_ECTSI1.000e-13597.87AMPKBI domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A836CBZ2_9STRA3.340e-11787.63AMPKBI domain-containing protein n=1 Tax=Tribonema... [more]
A0A835ZG75_9STRA7.790e-11688.04AMPKBI domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S4A5H3_9STRA6.680e-10679.23Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2WI24_9STRA5.540e-10577.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2BL33_9STRA1.680e-10478.07Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2WVW3_9STRA3.200e-10478.07Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2LHN5_9STRA5.220e-10380.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
F0YG62_AURAN6.950e-10381.97AMPKBI domain-containing protein n=1 Tax=Aureococc... [more]
A0A7S2AZ02_9STRA9.720e-10276.47Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11430contigL-elsbetiae_contig11430:2038..5640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score330.1
Seed ortholog evalue5.7e-88
Seed eggNOG ortholog2880.D8LDA2
Preferred namePRKAB2
KEGG rclassRC00005
KEGG koko:K00703,ko:K07199
KEGG ReactionR02421
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map00500,map01100,map01110,map02026,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
KEGG ModuleM00565
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004679,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0005952,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0007049,GO:0007050,GO:0007154,GO:0007163,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010565,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016236,GO:0016301,GO:0016310,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0019216,GO:0019217,GO:0019222,GO:0019538,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022607,GO:0023052,GO:0030011,GO:0031323,GO:0031326,GO:0031588,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0035088,GO:0035090,GO:0035878,GO:0036211,GO:0042304,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045786,GO:0046890,GO:0048518,GO:0048519,GO:0048523,GO:0048736,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051259,GO:0051291,GO:0051716,GO:0051726,GO:0060173,GO:0060249,GO:0060255,GO:0061245,GO:0061695,GO:0061919,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070050,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0098590,GO:0140096,GO:1901564,GO:1902494,GO:1902911,GO:1990234
EggNOG free text desc.amylopectin binding
EggNOG OGsKOG1616@1,KOG1616@2759
Ec32 ortholog descriptionAssociation with the SNF1 complex (ASC) domain
Ec32 orthologEc-25_001970.1
EC2.4.1.21
COG Functional cat.S
CAZyGT5
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons4
Model size706
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11430.1249.1prot_L-elsbetiae_contig11430.1249.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11430 2127..5503 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.2430286-UTR-L-elsbetiae_contig11430:2037..21261622815350.2430286-UTR-L-elsbetiae_contig11430:2037..2126Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11430 2038..2126 +
1691682854.7803164-UTR-L-elsbetiae_contig11430:2037..21261691682854.7803164-UTR-L-elsbetiae_contig11430:2037..2126Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11430 2038..2126 +
1622815350.291304-UTR-L-elsbetiae_contig11430:5503..56401622815350.291304-UTR-L-elsbetiae_contig11430:5503..5640Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11430 5504..5640 +
1691682854.8499968-UTR-L-elsbetiae_contig11430:5503..56401691682854.8499968-UTR-L-elsbetiae_contig11430:5503..5640Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11430 5504..5640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.253655-CDS-L-elsbetiae_contig11430:2126..21711622815350.253655-CDS-L-elsbetiae_contig11430:2126..2171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11430 2127..2171 +
1691682854.7949183-CDS-L-elsbetiae_contig11430:2126..21711691682854.7949183-CDS-L-elsbetiae_contig11430:2126..2171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11430 2127..2171 +
1622815350.2643085-CDS-L-elsbetiae_contig11430:3392..35541622815350.2643085-CDS-L-elsbetiae_contig11430:3392..3554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11430 3393..3554 +
1691682854.8087485-CDS-L-elsbetiae_contig11430:3392..35541691682854.8087485-CDS-L-elsbetiae_contig11430:3392..3554Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11430 3393..3554 +
1622815350.2734823-CDS-L-elsbetiae_contig11430:4293..44491622815350.2734823-CDS-L-elsbetiae_contig11430:4293..4449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11430 4294..4449 +
1691682854.821948-CDS-L-elsbetiae_contig11430:4293..44491691682854.821948-CDS-L-elsbetiae_contig11430:4293..4449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11430 4294..4449 +
1622815350.2819178-CDS-L-elsbetiae_contig11430:5386..55031622815350.2819178-CDS-L-elsbetiae_contig11430:5386..5503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11430 5387..5503 +
1691682854.8353753-CDS-L-elsbetiae_contig11430:5386..55031691682854.8353753-CDS-L-elsbetiae_contig11430:5386..5503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11430 5387..5503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11430.1249.1

>prot_L-elsbetiae_contig11430.1249.1 ID=prot_L-elsbetiae_contig11430.1249.1|Name=mRNA_L-elsbetiae_contig11430.1249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
MHRSGNDFTYIHTLKKGKHAFKFIVDDEWRFAPDQPTVADIEGRVNNFID
VSDFVGYTGEENFEANRVKAAEANDQYSQCTPDLDEYTKEPPPLPPHLRH
IILNKNPPANDPSALPVPQHVALNHLYCTAIKDGMMVLGMTERYKQKFVT
TVYYSTMPG*
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mRNA from alignment at L-elsbetiae_contig11430:2038..5640+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11430.1249.1 ID=mRNA_L-elsbetiae_contig11430.1249.1|Name=mRNA_L-elsbetiae_contig11430.1249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3603bp|location=Sequence derived from alignment at L-elsbetiae_contig11430:2038..5640+ (Laminarionema elsbetiae ELsaHSoW15)
AGTTGGTACCCACAGTATTTCGATGGGAGCACGGAGGGCGCCAGGTGTAC
ATCACGGGGACTTTCAACAATTGGGAAAAGCAGATCCCGATGCACAGGAG
CGGCAACGACTTCACGTACATCCATACGTTGAAGGTGAGAAGAGCCCCCC
CCCCCCCCCCCCCCCGTTTTTTTTTTGGGGGGGGGGCGCGGGGGGGGGGG
CGGGGGGGGGGGGGGGGTTGGAGGAGTGTGTTTTTGGGTTTTGTATGCGG
CGGGTGCCCCGATAGGTATCGGCGAGAGGCTAGTTTTGTAAGATAGATGC
TATTGTAAGAAGCGCTCATTGCGTGTATTTACGTCACGTCTGTACTTTTG
ACGTATTGTCGGGGCGGGTTTGCGTGTGTAGGTAGCTCTCATGTGTCTGT
ATTCCTGTACAGAAGACACGCCAACCCAACCCTCCCTCATTGCCCTAGAC
TACAGGCACAAACTCCCTCACCGCCCTATAGGGGTCCCTCCCACACCAGT
AATTGGTTTTTTCTCCCGCTAAATATCATATGCTGGATGTTAAGTGTTGT
TGCGATTTTTGCGTCGAATGGCGGCTGTCGGAGCACAGGCAATAAAAAGA
CGCCCGCGCTGAACAGCAGGTGTGGCAAGTGTATCGTGCTCGGCAACCAC
AGCATTTTTTTTTTTTGTGTCACCGGCTGCTTCCGCAGGCTGTTTCCTGC
TTCCCCCCTCCCCCCCGAAGACGTGAATTGAATTAATCCCCTAACAGCTT
AAATAGCCTGGTTTCCATATGGTGGCGTCTGTGTTGCCTCTCAGCCAAAG
ACAAGGTGTCGTGGAGATGTGAATAGAGAGGGCTCCAATCGAGCCCTCCC
CGACCACATTCGGGCGGGAGATAAAGTCTCCCCGCTATTCCTTCCGAAAA
TACAGAAACTCAACGGTCACGGACGGTATATCTAAAAGATACGGAGTATA
CAGTACCCGTCATATGCTAGAACTTGTACCCCTCTAGAGCTAGATATCCA
ATACAGCTGTACTGCTCTGAGGACTAGGTATCTAATACCATAACATGCGG
CTGCTGTTGCCTTTTCCTGTGGGTGCTGGCTGCGCTGCTCTCGGTCGAAA
AAATAAATCACGTTCTTCGTGGACGACCAGTGTTGAATCCATGCCTGTCC
CTTCTACGCAGCTGCTGTGCGATCGGATCGCATCTCCACACCGCGTTACG
CACGGACGCACGCACGCACGCACGACGGTGCCCCTAACCAGCCTCTCCCC
CCCCCTCCCACCACGACCACGACCCCCCTTGTTTGTTTCCTCTCTCTTCT
CCGCGTGTGTCCCTGCCTTTTTGGGCGGTTGGTGCCGTGCGCGCCGGGGG
AGCAGAAGGGGAAGCACGCGTTCAAGTTCATCGTTGATGACGAGTGGCGA
TTCGCGCCGGACCAGCCGACGGTCGCCGACATCGAGGGCAGGGTGAACAA
CTTCATCGACGTCAGCGACTTCGTGGGCTACACGGGGGAGGAGAACTTCG
AGGCAAACCGAGTGAAGGTGTGTGCGCGCGCTTGTGTGTACTGTACACGC
CAGAGGGAGAAAGAGAGAGAGAGAGAGAGTGTACATATGGGTGTGTGTGT
GGGTGTTTGTTTTTACATGGTAGAAAGCAGCAACAACAGCTTTTGCTCGG
CCACTCCAGGTGTCTTCACGAGGGGAGGGGGAGGGGGGAGGAGAGGGGGC
TACGAAAGTTCCTTCAAATATCTCCCTTTGACTGCTTCCCGCCATTTCTT
GAAAAGACTGGAACTATTCTTCGAAATACTGGAGCTCTATGTACATCTAT
AATGCCGTTGATAAACCTATTTTTGCACCAATGCGCAGCACCCAGTGCGC
ACGTAACGGTGGTTTGAGCGGGGATGGAGACCTTGCTCTACGCAGGGTGT
TTGTTTTTCCGAGCGCGTTTTCTGCGGTGATGTGGGTGAGTGTGACGCGG
AGGGCTCCCGCTCCGCTTTTCCCCTGTATGCCTCTTGGTTTTTGCGCCCC
GTCCCCCCCCGTCCCTTCTATCGACCTTCTGCCAGTCTGGCGTCGTGGTC
GTCGTCGTTGTTGTTGTTATTGTAGTTGTAGTTGTAGTTGTCGTTGATTG
TTTCTCTCTGGCTCGACCTCACCCAAACTCCCCTGTTGGATGTCGTTCTT
CTTCCTCCTTTCTTCTGGCACTACATGCATATATGTACGTACATACACGC
ATGCTGTCTCACTCGACGCTCGCTTTTTCTGCCTTCCTCGACGGGACGAA
GCGCAGGCGGCGGAGGCGAACGATCAGTATAGCCAGTGCACGCCAGATCT
GGACGAGTATACGAAGGAGCCACCCCCGCTTCCCCCCCACCTGAGACATA
TCATTCTCAACAAGAACCCCCCGGCGAACGACCCCTCGGCGCTCCCGGTG
CCGCAGCACGTGGTGAGTTGGTTCATGCCGTGCCGTGTGTGTTTGTGTGT
TTTTTTTTATCGAATTTGTTTCCCGCTGCTGCATATCTCCCTCCAAGACG
GTTATTTTTTTATTTTTTTGGAACACCGGCGCCATGGATGCACGTGCGGA
GGACGTCGGATGCAGTAGTCTACTCTTTCTTCCCTGTCTGTGTGCGCGGA
GGGAGGTACTTGTGTGCGGAGAAAGTTTGTTGTTTTCTCGTGCGGCGCGT
GCTTCGGCGCGTGCTTCCGCAGCGCGTCTGCGTGAAAGTTGCGCAGGTCT
CGCGTGGGATGATGCCGGTTGGTTTTTGTACGTGGGGGCTCTTTTCCAGC
CGCAGCATTTCCGGCGAGCACCCACCCCGTAATGTTAAGACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAAACCCCGCTC
TCGCGCGACGAGGAACTTTTCGCTCGTGTAGGAAGCACTCCACCAGCTCC
ACTGCTGCGTTATATACGGCAGCACAGATAATCTCGACGCAGGGGCACAG
ATCATCACAATCTCGGACCCGAGACACGATGCGCCCGGTCCGTAGACACG
AGATGAAACCGAGAAATTCACCATCTCAACTAAGAAATTCGTTATCTCAA
CACCACTTTCGTGCCTACTATACTGCCACCTACAAGTTTGACAAAAGTTC
GTTCCACTTCCAAACCCGACCCCTGGGTGGGGGGGGGGGGGGGGGGGCCC
GAATCGGGGCCCCCCGGCGCGCCCGCACCAGGAAAGAGCGGACGCGCGCC
CCGCAGGGCCCGAGCGGANNNNNNNNNNGCGGCCGCGGCCACGTGCGGCC
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCACAGGACGACACACCCACA
CACACACATGCATTTCCGATCGCCCGCCCCCGATCACGCACCGCCGCAGG
CACTGAACCACCTGTACTGCACGGCCATCAAGGACGGCATGATGGTGCTG
GGGATGACGGAGCGATACAAGCAGAAGTTCGTCACCACTGTATACTACAG
CACCATGCCGGGATAACAAAATCAGGCCCGCCCCGCAGCGTGTGCTGGTT
TGGACCGGGAAAAAGTGGGGAGGTGGGGGCGGCCCGAATCGGGGGCCCGC
GGCGTGCCTGAACCAGGAAAAGTCGGGAGCGGGGGGTAGGCGGCCAGGAG
CGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11430:2038..5640+

>mRNA_L-elsbetiae_contig11430.1249.1 ID=mRNA_L-elsbetiae_contig11430.1249.1|Name=mRNA_L-elsbetiae_contig11430.1249.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig11430:2038..5640+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACAGGAGCGGCAACGACTTCACGTACATCCATACGTTGAAGATGCA
CAGGAGCGGCAACGACTTCACGTACATCCATACGTTGAAGAAGGGGAAGC
ACGCGTTCAAGTTCATCGTTGATGACGAGTGGCGATTCGCGCCGGACCAG
CCGACGGTCGCCGACATCGAGGGCAGGGTGAACAACTTCATCGACGTCAG
CGACTTCGTGGGCTACACGGGGGAGGAGAACTTCGAGGCAAACCGAGTGA
AGAAGGGGAAGCACGCGTTCAAGTTCATCGTTGATGACGAGTGGCGATTC
GCGCCGGACCAGCCGACGGTCGCCGACATCGAGGGCAGGGTGAACAACTT
CATCGACGTCAGCGACTTCGTGGGCTACACGGGGGAGGAGAACTTCGAGG
CAAACCGAGTGAAGGCGGCGGAGGCGAACGATCAGTATAGCCAGTGCACG
CCAGATCTGGACGAGTATACGAAGGAGCCACCCCCGCTTCCCCCCCACCT
GAGACATATCATTCTCAACAAGAACCCCCCGGCGAACGACCCCTCGGCGC
TCCCGGTGCCGCAGCACGTGGCGGCGGAGGCGAACGATCAGTATAGCCAG
TGCACGCCAGATCTGGACGAGTATACGAAGGAGCCACCCCCGCTTCCCCC
CCACCTGAGACATATCATTCTCAACAAGAACCCCCCGGCGAACGACCCCT
CGGCGCTCCCGGTGCCGCAGCACGTGGCACTGAACCACCTGTACTGCACG
GCCATCAAGGACGGCATGATGGTGCTGGGGATGACGGAGCGATACAAGCA
GAAGTTCGTCACCACTGTATACTACAGCACCATGCCGGGATAAGCACTGA
ACCACCTGTACTGCACGGCCATCAAGGACGGCATGATGGTGCTGGGGATG
ACGGAGCGATACAAGCAGAAGTTCGTCACCACTGTATACTACAGCACCAT
GCCGGGATAA
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