mRNA_L-elsbetiae_contig1141.1238.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1141.1238.1
Unique NamemRNA_L-elsbetiae_contig1141.1238.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: D7FSF7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF7_ECTSI)

HSP 1 Score: 455 bits (1171), Expect = 1.350e-155
Identity = 247/270 (91.48%), Postives = 260/270 (96.30%), Query Frame = 1
Query:    1 GQINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLET-AGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 807
            G++NAAKYLSY MFG+CVVWALLMLWFRKRIKMAIAITKEA+RAVN MKLLILFPVVQSAALL+FLLPWVT++LYLASSGEITT   ET AG TITVK+FKYTDNIRY+ALY LFAYFWTSEFIVAMGQIVVAMAVA+WYFCRDK+TIGSGTV+ SVKTSLFYHSGTAAFGSLIIAIIKTIRA+VAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCT AKKAFFLIARNIMRVMAVGVVSEVVLILGKV
Sbjct:  249 GEVNAAKYLSYIMFGMCVVWALLMLWFRKRIKMAIAITKEASRAVNDMKLLILFPVVQSAALLIFLLPWVTFVLYLASSGEITTEQWETGAGTTITVKQFKYTDNIRYTALYFLFAYFWTSEFIVAMGQIVVAMAVASWYFCRDKSTIGSGTVLSSVKTSLFYHSGTAAFGSLIIAIIKTIRAIVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTAAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 518          
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A835Z9G9_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G9_9STRA)

HSP 1 Score: 340 bits (872), Expect = 2.370e-110
Identity = 181/268 (67.54%), Postives = 222/268 (82.84%), Query Frame = 1
Query:    4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 807
            +  A  Y SY +F L  +WALL+LW RKRI  AI +TKEAARAVN+M LL+ FP++Q+  LL+FL+PW  Y++YLASSG IT   +ET  G  TVK F Y+DN RY+ LYL+F YFWTSE+I+A+GQIVVAM+VATWYF R+K +IGS TV+ S+ ++L+YH+GTAAFGSL+IAIIKTIR V+AY+QKK KD+HNK+L A+LCC XXXXXXXEKCMKFLNKNAYIQTAIFGYSFC  A+KAFFLIARNI+RV AVG+VSE+V ILG +
Sbjct:  284 EAKALLYFSYVLFALGGLWALLLLWLRKRINTAICVTKEAARAVNSMPLLLFFPIIQTLGLLIFLVPWAIYVVYLASSGTITP--VETPSGA-TVKAFSYSDNDRYAGLYLIFCYFWTSEYILALGQIVVAMSVATWYFTREKGSIGSRTVLRSIGSTLYYHAGTAAFGSLVIAIIKTIRTVIAYLQKKAKDSHNKLLSALLCCXXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCKAARKAFFLIARNILRVAAVGMVSELVAILGLI 548          
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A7S2V489_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V489_9STRA)

HSP 1 Score: 306 bits (785), Expect = 6.330e-100
Identity = 157/267 (58.80%), Postives = 214/267 (80.15%), Query Frame = 1
Query:    4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGK 804
            ++   K   Y +  +  ++ L ++  RKRIK+A+ I KEA++A++AMK+++ FPV+QS  +L FL+PW+ Y++YLASSGE+ T  +  +G  + VK+F+YTD++RY+AL+LLF++FWTS+FI+A+GQ+VVAMAV+ WYF ++K++IGS TV  S+K S++YHSGT AFGSLIIAIIKTIRAVV+YIQKK   + NKI  A+LCC+ XXXXX EKCMKFLNKNAYIQTAI+GYSFC  A+KAFFLIARNI+R+ AV +V   VL +GK
Sbjct:   23 EVKGLKVFGYVLVAIGALFFLFIVCMRKRIKLAVGIVKEASKAISAMKVIVFFPVIQSIGVLCFLIPWIIYVVYLASSGEMVTYEVPASG--VMVKKFEYTDSMRYAALFLLFSWFWTSQFIIALGQLVVAMAVSMWYFTKNKSSIGSSTVFKSIKMSMWYHSGTCAFGSLIIAIIKTIRAVVSYIQKKAAKSGNKIAVALLCCIQXXXXXIEKCMKFLNKNAYIQTAIYGYSFCKAARKAFFLIARNILRITAVALVGNYVLFIGK 287          
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A7S3Y650_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y650_HETAK)

HSP 1 Score: 309 bits (791), Expect = 9.310e-98
Identity = 167/268 (62.31%), Postives = 214/268 (79.85%), Query Frame = 1
Query:    4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 807
            +     Y SYA+F +  +W LL+L  RKRI++A+ ITK+A+RAV AMKLL+++PV+Q+  +L+FL+PW  Y LYLASSGE+T         T T+K F Y DNIRY+ LYLLF +FWTS+FI+AMGQ+VVAMA++ WYF  D++ IG+GTV+ +++ S++YH GTAAFGSLIIAIIKTIRA++AY+QKK K + NKILQAVLC  XXXXXXX KCMKFLNKNAYIQTAIFG SFC+ AK AFFLIARNI+R+ AV +V + VL+LGK+
Sbjct:  291 EAKGLLYFSYALFVVFGLWLLLILVLRKRIQLALRITKQASRAVAAMKLLMVWPVIQTLGVLVFLIPWTIYALYLASSGEVT------VDSTGTIKTFTYDDNIRYAGLYLLFCWFWTSQFIIAMGQVVVAMAISFWYFTLDRSKIGNGTVLKAIRQSMWYHMGTAAFGSLIIAIIKTIRAIIAYLQKKAKKSGNKILQAVLCXXXXXXXXXXKCMKFLNKNAYIQTAIFGKSFCSAAKAAFFLIARNILRIAAVSMVGDFVLLLGKI 552          
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A7S2Y2B5_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2B5_9STRA)

HSP 1 Score: 301 bits (771), Expect = 4.490e-95
Identity = 158/261 (60.54%), Postives = 212/261 (81.23%), Query Frame = 1
Query:   22 YLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGK 804
            Y  Y +  + V++ L +L  RKRIK+A+ I KEA++A++AMK+++LFPV+QS  +L FL+PWV Y++YLASSGEI   T+E   G   VK+F+YTDN+RY+AL+LLF++FWTS+F+VA+GQ+VVAMAV+ WYF ++K +IG+ TV  +++ S++YHSGT AFGSLIIAIIKTIRAV++Y+QKK   + NK+ QAVLCC+ XXXXXX   MKFLNKNAYIQTAI+GYSFC  A+KAFFLIARNI+RV+AV +V   +L +GK
Sbjct:  264 YFGYVLIAIGVLFFLFILCMRKRIKLAVGIVKEASKAISAMKIIVLFPVIQSLGVLCFLIPWVIYVVYLASSGEI--VTIEMPNGA-QVKQFQYTDNMRYAALFLLFSWFWTSQFVVALGQLVVAMAVSMWYFTKEKGSIGNLTVFKAIRVSMWYHSGTCAFGSLIIAIIKTIRAVISYLQKKAAQSGNKLAQAVLCCIQXXXXXXXXXMKFLNKNAYIQTAIYGYSFCKAARKAFFLIARNILRVVAVALVGNYILFIGK 521          
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A7S3Y6D2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6D2_HETAK)

HSP 1 Score: 296 bits (758), Expect = 1.730e-92
Identity = 156/268 (58.21%), Postives = 200/268 (74.63%), Query Frame = 1
Query:    4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 807
            + N+ KY SY +F L  VW LLML  RKRI++A+ ITKEA++AV +MKLL+++PV+Q+  +L FL+PW+ Y+LYLASSG     T+E   G   +K F Y+DNIRY+ LYLLF +FWTSEF++AMGQIVVAMAV+ WYF  D+++IG              H+GTAAFGSLIIAIIKTIRAV+AY+QKK K + NK+ Q VLC +       EKCMKFLNKNAYIQTAIFG SFC+ AK AFFLIARNI+R+ AV +V + VL++G++
Sbjct:  334 EANSLKYFSYFLFALTGVWLLLMLVLRKRIQLALKITKEASKAVASMKLLLIWPVIQTLGVLCFLIPWIIYVLYLASSG-----TVEVNNG---IKTFTYSDNIRYAGLYLLFCWFWTSEFVIAMGQIVVAMAVSFWYFTMDRSSIGXXXXXXXXXXXXXXHTGTAAFGSLIIAIIKTIRAVIAYMQKKAKQSGNKLAQIVLCVIQCCMWCLEKCMKFLNKNAYIQTAIFGKSFCSAAKAAFFLIARNILRIAAVSLVGDFVLLIGRI 593          
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A7S2D002_9STRA (Choline transporter-like protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D002_9STRA)

HSP 1 Score: 281 bits (718), Expect = 3.060e-86
Identity = 148/261 (56.70%), Postives = 196/261 (75.10%), Query Frame = 1
Query:   25 LSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATL-ETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGK 804
            L+Y + G+  +WA ++   R RI +A+ IT+EAARAV AM  LI FP+VQ+A LL+F +PWV + +YLASSG +   T+  T    I VK F+Y+D    + LY+LF +FWT++FI+A+GQ+V+A+AV+ WYF RDK+TIG+ TV  SV+ +  YH G+AAFGSLIIAIIKTIRAV+ Y+Q K     N++  AVLCC+   XXX EKCMKF+NKNAYIQ AIFGYSFC  A+KAF+LI RNI+R+ AVG+VSE+V I+GK
Sbjct:  331 LAYILLGIAALWACVICCLRSRIMLALGITQEAARAVAAMPFLIFFPLVQAAGLLVFFIPWVIFSIYLASSGTVVAETVCYTTSTCIQVKNFEYSDEQLGAGLYMLFIWFWTTQFIIAIGQLVIALAVSQWYFTRDKSTIGNVTVFDSVRMAFRYHMGSAAFGSLIIAIIKTIRAVIMYLQGKAAKAKNRLASAVLCCIQCCXXXVEKCMKFINKNAYIQIAIFGYSFCKAARKAFWLILRNILRIAAVGIVSEIVSIMGK 591          
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A8J2WZ97_9STRA (Choline transporter-like protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZ97_9STRA)

HSP 1 Score: 276 bits (705), Expect = 1.820e-84
Identity = 153/271 (56.46%), Postives = 193/271 (71.22%), Query Frame = 1
Query:    4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHN----KILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGK 804
            Q N   YL+Y    LC +WA  +   RKRI +AI ITKEAA+ +  M ++I+FPVVQ  AL++F++PW  Y L+LASSGE     +ET  G    ++  Y +    +  Y++F YFW+SEFI+A+GQI++A+AV+TWYF RDK  IG+ TVI S +   +YH GTAAFGSLIIAIIKTIRA++ YIQKK K+  N    KI  AVLCC+  XXXX EKCMKF+NKNAYIQTAIFGY FC  AK AFFLI RNI R+MA+ +VS  VL+LGK
Sbjct:  341 QANGMLYLAYFCAALCALWACTICCLRKRIALAIGITKEAAKCIATMPIIIVFPVVQVMALIVFVIPWFIYCLFLASSGE-----METVKG---ARQMVYDETTFKAGWYMIFVYFWSSEFIIALGQIILALAVSTWYFTRDKGKIGNSTVIWSFRQGAWYHWGTAAFGSLIIAIIKTIRAMIKYIQKKCKNIKNPVAKKIAMAVLCCIDCXXXXIEKCMKFINKNAYIQTAIFGYHFCKAAKCAFFLILRNIARIMALSIVSGFVLLLGK 603          
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A812RYG8_SYMMI (Choline transporter-like protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RYG8_SYMMI)

HSP 1 Score: 265 bits (676), Expect = 1.670e-82
Identity = 143/268 (53.36%), Postives = 189/268 (70.52%), Query Frame = 1
Query:    4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITT-ATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGK 804
            ++   + LS   F L  ++  L+   RKRI +A+ I KEA+RA+ AM +L+L PV Q+ A+++FL+PW  Y +YLASSG+I    T +T G     K  +Y  N R + LYLLF +FWTSEFI+A+GQI  AMA++ WYF RDK + G+GTVI + +T+ FYH GTAAFGSLIIAIIKTIRA++AY+QKK K + N++   VL  +       EKCM+FLNKNAYIQTAI+GYSFC   + AFFLIARN++RV+AV  V + VL LGK
Sbjct:  121 EVRTLQALSIIGFVLTGLYVCLLCVMRKRIVLALGIVKEASRALAAMPILVLMPVFQALAIVVFLVPWTIYAIYLASSGDIEVHETSDTPGDETQYKTMEYDQNTRLAFLYLLFCWFWTSEFILAVGQITSAMAISAWYFTRDKKSEGNGTVIWAFRTTCFYHLGTAAFGSLIIAIIKTIRAILAYLQKKAKKSGNQLALCVLRMLQCCMWCVEKCMRFLNKNAYIQTAIYGYSFCKACRSAFFLIARNVLRVIAVSYVGDFVLFLGK 388          
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: B8C577_THAPS (Choline transporter-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C577_THAPS)

HSP 1 Score: 254 bits (648), Expect = 1.840e-80
Identity = 134/248 (54.03%), Postives = 187/248 (75.40%), Query Frame = 1
Query:   64 LLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 807
            LL L+ RKRI++A+   KE ++A+ AM  +I+FPV+Q   L++F++ W  Y+ +LAS G+ +T+  +     I+V+ F++++ ++    YLLF +FWTS+FI+AMG+I+ AM+V+ WYF RDK+ IGS TV  S+ TS++YHSGTAAFGSLIIAIIK IR+ +AY+Q+K ++  + I +AVLCC  XXXXX EKCM+FLNKNAYIQTAIFG SFCT AK+AFFLI RN  R+ A+  VS  V+ +GKV
Sbjct:    4 LLFLFMRKRIQLAMGCVKETSKAITAMPGIIVFPVIQGLGLMVFMIAWCVYVAHLASMGDFSTSQYDAGPIKISVRTFEFSNFVKQCGWYLLFCFFWTSQFILAMGEIIFAMSVSKWYFSRDKSNIGSATVWTSIATSMWYHSGTAAFGSLIIAIIKMIRSFLAYLQRKAEEMDSSIAKAVLCCFQXXXXXLEKCMRFLNKNAYIQTAIFGSSFCTSAKEAFFLILRNAARIAAITYVSGGVMFIGKV 251          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSF7_ECTSI1.350e-15591.48Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A835Z9G9_9STRA2.370e-11067.54Choline transporter-like protein n=1 Tax=Tribonema... [more]
A0A7S2V489_9STRA6.330e-10058.80Choline transporter-like protein n=1 Tax=Fibrocaps... [more]
A0A7S3Y650_HETAK9.310e-9862.31Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A7S2Y2B5_9STRA4.490e-9560.54Choline transporter-like protein n=1 Tax=Fibrocaps... [more]
A0A7S3Y6D2_HETAK1.730e-9258.21Choline transporter-like protein n=1 Tax=Heterosig... [more]
A0A7S2D002_9STRA3.060e-8656.70Choline transporter-like protein n=1 Tax=Florencie... [more]
A0A8J2WZ97_9STRA1.820e-8456.46Choline transporter-like protein n=1 Tax=Pelagomon... [more]
A0A812RYG8_SYMMI1.670e-8253.36Choline transporter-like protein n=1 Tax=Symbiodin... [more]
B8C577_THAPS1.840e-8054.03Choline transporter-like protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1141contigL-elsbetiae_contig1141:4577..7345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score454.1
Seed ortholog evalue4.4e-125
Seed eggNOG ortholog2880.D7FSF7
KEGG koko:K06515,ko:K15377
KEGG TC2.A.92.1,2.A.92.1.1
KEGG Pathwayko05231,map05231
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Ec32 ortholog descriptionCholine transporter-like
Ec32 orthologEc-04_000670.1
Exons6
Model size810
Cds size810
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1141.1238.1prot_L-elsbetiae_contig1141.1238.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1141 4577..7345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815349.1666944-CDS-L-elsbetiae_contig1141:4576..46191622815349.1666944-CDS-L-elsbetiae_contig1141:4576..4619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 4577..4619 +
1691682854.0113726-CDS-L-elsbetiae_contig1141:4576..46191691682854.0113726-CDS-L-elsbetiae_contig1141:4576..4619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 4577..4619 +
1622815349.1817288-CDS-L-elsbetiae_contig1141:5183..52871622815349.1817288-CDS-L-elsbetiae_contig1141:5183..5287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 5184..5287 +
1691682854.0216186-CDS-L-elsbetiae_contig1141:5183..52871691682854.0216186-CDS-L-elsbetiae_contig1141:5183..5287Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 5184..5287 +
1622815349.1915674-CDS-L-elsbetiae_contig1141:5587..56831622815349.1915674-CDS-L-elsbetiae_contig1141:5587..5683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 5588..5683 +
1691682854.031808-CDS-L-elsbetiae_contig1141:5587..56831691682854.031808-CDS-L-elsbetiae_contig1141:5587..5683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 5588..5683 +
1622815349.2314103-CDS-L-elsbetiae_contig1141:5965..61061622815349.2314103-CDS-L-elsbetiae_contig1141:5965..6106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 5966..6106 +
1691682854.042801-CDS-L-elsbetiae_contig1141:5965..61061691682854.042801-CDS-L-elsbetiae_contig1141:5965..6106Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 5966..6106 +
1622815349.2434504-CDS-L-elsbetiae_contig1141:6636..68521622815349.2434504-CDS-L-elsbetiae_contig1141:6636..6852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 6637..6852 +
1691682854.0547729-CDS-L-elsbetiae_contig1141:6636..68521691682854.0547729-CDS-L-elsbetiae_contig1141:6636..6852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 6637..6852 +
1622815349.25512-CDS-L-elsbetiae_contig1141:7135..73451622815349.25512-CDS-L-elsbetiae_contig1141:7135..7345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 7136..7345 +
1691682854.0687034-CDS-L-elsbetiae_contig1141:7135..73451691682854.0687034-CDS-L-elsbetiae_contig1141:7135..7345Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1141 7136..7345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1141.1238.1

>prot_L-elsbetiae_contig1141.1238.1 ID=prot_L-elsbetiae_contig1141.1238.1|Name=mRNA_L-elsbetiae_contig1141.1238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=270bp
GQINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKL
LILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFK
YTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSG
TVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQ
AVLCCVQCCLWCLEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNI
MRVMAVGVVSEVVLILGKV*
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mRNA from alignment at L-elsbetiae_contig1141:4577..7345+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1141.1238.1 ID=mRNA_L-elsbetiae_contig1141.1238.1|Name=mRNA_L-elsbetiae_contig1141.1238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2769bp|location=Sequence derived from alignment at L-elsbetiae_contig1141:4577..7345+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCAGATCAACGCTGCGAAGTACCTCTCCTACGCTATGTTCGGTGAGAT ATGACGTCACGAGTGTCTCTCGGTTTGTTTTATGATTTTTTTGGGGGCGT GGGGGTAGGGGAGCTTGTGCGTAAAGGTTGCAGTCGGTGCGGATCGCTCA TGGTTGCAGTATAAATAGAGCCGTGAGTGCACACGATGAGGGTGGTGGGG GTGGGGGTGGTGGGACAACAGGAGTATCGAAGATGGACACGTTGAACGCC CCTGAAGTTGTCTTCGGTGCCATGAGTGTTTCGACTGAGCTTTCGAATTG GAACAAATTTTATGTGCCTTTGAATGCGGCGTTGATAGGGGAAACGAGTG AACAGATAAAATCATTGCGGCAAATACCCCAAAAGTGAAACAGCACTCAA CGTCGCCAACAAAATCAACATTTTTCTACCCAAGCTGCTACAAATGCAGA AGCGCAGTGACGCGTAGCGCTCGCAAAGACAAGGCCTGGGTGTTTCATTC CCACAGCATTCGCAGACCGCTAACGCCCAGCGACCCGCCATTGGTCATAA GGTACAAGTGTTTGATGCAGCGCTTATGTTTACTTTTTGATGTCTGCATT GTATCAGGGCTGTGCGTCGTGTGGGCTCTGCTGATGCTGTGGTTCCGGAA GCGGATTAAGATGGCGATTGCTATCACCAAAGAGGCCGCCAGAGCCGTCA ACGCCATGAAGGTATTTATTGACAAAGTGAAGCATATTAACTGGTTAATT ATTGCTGAAAGCCACGACGCCCCCCGAAAACAAATTGAGTCAAAATACAT GTTTTTTCGACGTTTCACGTGTAGATGTTGAGTATACGGGTTGGTTTTGG ATCCTGTCCCCTCTCCATCGCAACTCTGACGCGCCGCATTGTTTTGTGCC ACATAAATACCCTGCTTTGCGGTGAACCGGGGATCAAAGTGTAAACTGAA CGAGTACATGCCTCCTTATTCTTGCTCGTTTCCTTCGTGCCGGCACTTGT GCGTGCAACAGCTGCTGATCCTGTTCCCGGTGGTGCAGTCGGCGGCTCTA CTGCTATTCTTGCTCCCGTGGGTGACGTACATCCTCTACTTGGCTTCCAG TGGAGAGGTACATGCGAGAGAGGGACACCTAGAAAAAAACTACCTCCAGT CAAAAACCATCCGATCGGAACCTGGAAAATCTCGTCCCAGCGAAACCGAT CAAGCTGCTGTGTATCGCTTATTTTCAATACGCATCTTGGCCTATGCCGG TGGGATACTTTCCCTCCCATCGAGTAAGAGACACCGCACATGCAAGTAGT GTTGAATAGTACGACGGAAATGCAAGGTAATGCACCAAGAAGCTCGGCGG GTCTTGACGCGAGCGCGTGTAACCGGCGCTTGCTCCCAGATAACCACAGC AACCTTGGAGACGGCGGGGGGCACGATCACGGTGAAAGAGTTCAAGTACA CCGACAACATCCGCTACAGCGCGCTCTACCTTCTCTTCGCCTACTTCTGG ACGAGCGAGTTCATCGTCGCCATGGGACAGGTACTTATTACAACTGCTGT GTAGCTGTTTCCCTCCGTACAACGACCCCAGCCCCATATTTCTCCTGAGC GCCGCGAGCGCCTTTCTGGCCTAGGAGCCGTCCACTAGGGCAGTGTTTAC GGGGGCCGGTGACCGACTTTTGCCTTGAAGAACAAGTTTGGTCATTGTCA AGGGGGAGTACATATAGTCTATAGATCCGAAAGGAACGTTTGGCACTATG TATGTGGAAAACCCCATGTTGAGAGCTGTGTCGGTATGCAGTGCAACTGC TTCGAGGCTAATGTGCTTGAAATCATCCAAGGAGGCGCGTGTTCTTGAGA TTGTTTTATGGCTACGCTCGTGTACGCAGTCTCGAGTGTTTTTCATCCCT CTGGAATCAATGCGTGTTCCGTTGAAATCCGCATCAACCCTCTCCCTCAG AGCTAATATGTTACCCACACATAACGAACTAGAAAATGCTATTTCTAATA GCGCAGTCACAATACCTCCCTGCTTGCCCTTGTTGGCGCTTGGGTGCGTG TCTGCGACAGATCGTGGTGGCTATGGCGGTGGCAACATGGTACTTCTGCC GCGACAAGAATACAATCGGGAGCGGGACCGTGATTTGCTCTGTTAAGACG TCTCTCTTCTACCATTCCGGCACGGCGGCCTTCGGCTCGCTCATCATCGC CATCATCAAGACTATCCGGGCCGTCGTAGCGTACATCCAGAAGAAGACCA AGGATACGCACAACAAGATCCTGCAGGTGCGTAATTCATCCATCTGCAGT TCTTTGTCGCTTGCGTGCGGAAACCATTCCGTCTCGCACGTCTTTTCTTG CGGTTTAGTGGTAGAAGTGGCAGGAGCGAAAGTCGGATGTGATACGATAA ACCTGCGTCTCTGGGCAATACCACGGAACGGCGCCTCCTGTCGATTCTCA ACACGGAAGAGCAGAATCAAGGGCTGAGGCTAACGCATGAACACCTCGTC CGACTCGTGAGATTCCCGTACCCCCCACCCCGGTCGGTCTTGCTCGTGCC AAACGATAGGCGGTCCTGTGCTGCGTGCAGTGCTGCCTATGGTGTCTGGA GAAGTGCATGAAATTCCTCAACAAGAACGCCTACATACAAACGGCCATCT TCGGATACAGCTTCTGCACCGGCGCAAAGAAAGCCTTCTTCCTCATCGCC CGCAACATCATGCGGGTCATGGCGGTTGGAGTCGTCTCCGAGGTCGTCTT GATCCTCGGCAAGGTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1141:4577..7345+

>mRNA_L-elsbetiae_contig1141.1238.1 ID=mRNA_L-elsbetiae_contig1141.1238.1|Name=mRNA_L-elsbetiae_contig1141.1238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1620bp|location=Sequence derived from alignment at L-elsbetiae_contig1141:4577..7345+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCAGATCAACGCTGCGAAGTACCTCTCCTACGCTATGTTCGGGCCAGA
TCAACGCTGCGAAGTACCTCTCCTACGCTATGTTCGGGCTGTGCGTCGTG
TGGGCTCTGCTGATGCTGTGGTTCCGGAAGCGGATTAAGATGGCGATTGC
TATCACCAAAGAGGCCGCCAGAGCCGTCAACGCCATGAAGGGCTGTGCGT
CGTGTGGGCTCTGCTGATGCTGTGGTTCCGGAAGCGGATTAAGATGGCGA
TTGCTATCACCAAAGAGGCCGCCAGAGCCGTCAACGCCATGAAGCTGCTG
ATCCTGTTCCCGGTGGTGCAGTCGGCGGCTCTACTGCTATTCTTGCTCCC
GTGGGTGACGTACATCCTCTACTTGGCTTCCAGTGGAGAGCTGCTGATCC
TGTTCCCGGTGGTGCAGTCGGCGGCTCTACTGCTATTCTTGCTCCCGTGG
GTGACGTACATCCTCTACTTGGCTTCCAGTGGAGAGATAACCACAGCAAC
CTTGGAGACGGCGGGGGGCACGATCACGGTGAAAGAGTTCAAGTACACCG
ACAACATCCGCTACAGCGCGCTCTACCTTCTCTTCGCCTACTTCTGGACG
AGCGAGTTCATCGTCGCCATGGGACAGATAACCACAGCAACCTTGGAGAC
GGCGGGGGGCACGATCACGGTGAAAGAGTTCAAGTACACCGACAACATCC
GCTACAGCGCGCTCTACCTTCTCTTCGCCTACTTCTGGACGAGCGAGTTC
ATCGTCGCCATGGGACAGATCGTGGTGGCTATGGCGGTGGCAACATGGTA
CTTCTGCCGCGACAAGAATACAATCGGGAGCGGGACCGTGATTTGCTCTG
TTAAGACGTCTCTCTTCTACCATTCCGGCACGGCGGCCTTCGGCTCGCTC
ATCATCGCCATCATCAAGACTATCCGGGCCGTCGTAGCGTACATCCAGAA
GAAGACCAAGGATACGCACAACAAGATCCTGCAGATCGTGGTGGCTATGG
CGGTGGCAACATGGTACTTCTGCCGCGACAAGAATACAATCGGGAGCGGG
ACCGTGATTTGCTCTGTTAAGACGTCTCTCTTCTACCATTCCGGCACGGC
GGCCTTCGGCTCGCTCATCATCGCCATCATCAAGACTATCCGGGCCGTCG
TAGCGTACATCCAGAAGAAGACCAAGGATACGCACAACAAGATCCTGCAG
GCGGTCCTGTGCTGCGTGCAGTGCTGCCTATGGTGTCTGGAGAAGTGCAT
GAAATTCCTCAACAAGAACGCCTACATACAAACGGCCATCTTCGGATACA
GCTTCTGCACCGGCGCAAAGAAAGCCTTCTTCCTCATCGCCCGCAACATC
ATGCGGGTCATGGCGGTTGGAGTCGTCTCCGAGGTCGTCTTGATCCTCGG
CAAGGTGTGAGCGGTCCTGTGCTGCGTGCAGTGCTGCCTATGGTGTCTGG
AGAAGTGCATGAAATTCCTCAACAAGAACGCCTACATACAAACGGCCATC
TTCGGATACAGCTTCTGCACCGGCGCAAAGAAAGCCTTCTTCCTCATCGC
CCGCAACATCATGCGGGTCATGGCGGTTGGAGTCGTCTCCGAGGTCGTCT
TGATCCTCGGCAAGGTGTGA
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