mRNA_L-elsbetiae_contig1141.1238.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: D7FSF7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF7_ECTSI) HSP 1 Score: 455 bits (1171), Expect = 1.350e-155 Identity = 247/270 (91.48%), Postives = 260/270 (96.30%), Query Frame = 1
Query: 1 GQINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLET-AGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 807
G++NAAKYLSY MFG+CVVWALLMLWFRKRIKMAIAITKEA+RAVN MKLLILFPVVQSAALL+FLLPWVT++LYLASSGEITT ET AG TITVK+FKYTDNIRY+ALY LFAYFWTSEFIVAMGQIVVAMAVA+WYFCRDK+TIGSGTV+ SVKTSLFYHSGTAAFGSLIIAIIKTIRA+VAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCT AKKAFFLIARNIMRVMAVGVVSEVVLILGKV
Sbjct: 249 GEVNAAKYLSYIMFGMCVVWALLMLWFRKRIKMAIAITKEASRAVNDMKLLILFPVVQSAALLIFLLPWVTFVLYLASSGEITTEQWETGAGTTITVKQFKYTDNIRYTALYFLFAYFWTSEFIVAMGQIVVAMAVASWYFCRDKSTIGSGTVLSSVKTSLFYHSGTAAFGSLIIAIIKTIRAIVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTAAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 518
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A835Z9G9_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G9_9STRA) HSP 1 Score: 340 bits (872), Expect = 2.370e-110 Identity = 181/268 (67.54%), Postives = 222/268 (82.84%), Query Frame = 1
Query: 4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 807
+ A Y SY +F L +WALL+LW RKRI AI +TKEAARAVN+M LL+ FP++Q+ LL+FL+PW Y++YLASSG IT +ET G TVK F Y+DN RY+ LYL+F YFWTSE+I+A+GQIVVAM+VATWYF R+K +IGS TV+ S+ ++L+YH+GTAAFGSL+IAIIKTIR V+AY+QKK KD+HNK+L A+LCC XXXXXXXEKCMKFLNKNAYIQTAIFGYSFC A+KAFFLIARNI+RV AVG+VSE+V ILG +
Sbjct: 284 EAKALLYFSYVLFALGGLWALLLLWLRKRINTAICVTKEAARAVNSMPLLLFFPIIQTLGLLIFLVPWAIYVVYLASSGTITP--VETPSGA-TVKAFSYSDNDRYAGLYLIFCYFWTSEYILALGQIVVAMSVATWYFTREKGSIGSRTVLRSIGSTLYYHAGTAAFGSLVIAIIKTIRTVIAYLQKKAKDSHNKLLSALLCCXXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCKAARKAFFLIARNILRVAAVGMVSELVAILGLI 548
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A7S2V489_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V489_9STRA) HSP 1 Score: 306 bits (785), Expect = 6.330e-100 Identity = 157/267 (58.80%), Postives = 214/267 (80.15%), Query Frame = 1
Query: 4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGK 804
++ K Y + + ++ L ++ RKRIK+A+ I KEA++A++AMK+++ FPV+QS +L FL+PW+ Y++YLASSGE+ T + +G + VK+F+YTD++RY+AL+LLF++FWTS+FI+A+GQ+VVAMAV+ WYF ++K++IGS TV S+K S++YHSGT AFGSLIIAIIKTIRAVV+YIQKK + NKI A+LCC+ XXXXX EKCMKFLNKNAYIQTAI+GYSFC A+KAFFLIARNI+R+ AV +V VL +GK
Sbjct: 23 EVKGLKVFGYVLVAIGALFFLFIVCMRKRIKLAVGIVKEASKAISAMKVIVFFPVIQSIGVLCFLIPWIIYVVYLASSGEMVTYEVPASG--VMVKKFEYTDSMRYAALFLLFSWFWTSQFIIALGQLVVAMAVSMWYFTKNKSSIGSSTVFKSIKMSMWYHSGTCAFGSLIIAIIKTIRAVVSYIQKKAAKSGNKIAVALLCCIQXXXXXIEKCMKFLNKNAYIQTAIYGYSFCKAARKAFFLIARNILRITAVALVGNYVLFIGK 287
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A7S3Y650_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y650_HETAK) HSP 1 Score: 309 bits (791), Expect = 9.310e-98 Identity = 167/268 (62.31%), Postives = 214/268 (79.85%), Query Frame = 1
Query: 4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 807
+ Y SYA+F + +W LL+L RKRI++A+ ITK+A+RAV AMKLL+++PV+Q+ +L+FL+PW Y LYLASSGE+T T T+K F Y DNIRY+ LYLLF +FWTS+FI+AMGQ+VVAMA++ WYF D++ IG+GTV+ +++ S++YH GTAAFGSLIIAIIKTIRA++AY+QKK K + NKILQAVLC XXXXXXX KCMKFLNKNAYIQTAIFG SFC+ AK AFFLIARNI+R+ AV +V + VL+LGK+
Sbjct: 291 EAKGLLYFSYALFVVFGLWLLLILVLRKRIQLALRITKQASRAVAAMKLLMVWPVIQTLGVLVFLIPWTIYALYLASSGEVT------VDSTGTIKTFTYDDNIRYAGLYLLFCWFWTSQFIIAMGQVVVAMAISFWYFTLDRSKIGNGTVLKAIRQSMWYHMGTAAFGSLIIAIIKTIRAIIAYLQKKAKKSGNKILQAVLCXXXXXXXXXXKCMKFLNKNAYIQTAIFGKSFCSAAKAAFFLIARNILRIAAVSMVGDFVLLLGKI 552
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A7S2Y2B5_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2B5_9STRA) HSP 1 Score: 301 bits (771), Expect = 4.490e-95 Identity = 158/261 (60.54%), Postives = 212/261 (81.23%), Query Frame = 1
Query: 22 YLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGK 804
Y Y + + V++ L +L RKRIK+A+ I KEA++A++AMK+++LFPV+QS +L FL+PWV Y++YLASSGEI T+E G VK+F+YTDN+RY+AL+LLF++FWTS+F+VA+GQ+VVAMAV+ WYF ++K +IG+ TV +++ S++YHSGT AFGSLIIAIIKTIRAV++Y+QKK + NK+ QAVLCC+ XXXXXX MKFLNKNAYIQTAI+GYSFC A+KAFFLIARNI+RV+AV +V +L +GK
Sbjct: 264 YFGYVLIAIGVLFFLFILCMRKRIKLAVGIVKEASKAISAMKIIVLFPVIQSLGVLCFLIPWVIYVVYLASSGEI--VTIEMPNGA-QVKQFQYTDNMRYAALFLLFSWFWTSQFVVALGQLVVAMAVSMWYFTKEKGSIGNLTVFKAIRVSMWYHSGTCAFGSLIIAIIKTIRAVISYLQKKAAQSGNKLAQAVLCCIQXXXXXXXXXMKFLNKNAYIQTAIYGYSFCKAARKAFFLIARNILRVVAVALVGNYILFIGK 521
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A7S3Y6D2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6D2_HETAK) HSP 1 Score: 296 bits (758), Expect = 1.730e-92 Identity = 156/268 (58.21%), Postives = 200/268 (74.63%), Query Frame = 1
Query: 4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 807
+ N+ KY SY +F L VW LLML RKRI++A+ ITKEA++AV +MKLL+++PV+Q+ +L FL+PW+ Y+LYLASSG T+E G +K F Y+DNIRY+ LYLLF +FWTSEF++AMGQIVVAMAV+ WYF D+++IG H+GTAAFGSLIIAIIKTIRAV+AY+QKK K + NK+ Q VLC + EKCMKFLNKNAYIQTAIFG SFC+ AK AFFLIARNI+R+ AV +V + VL++G++
Sbjct: 334 EANSLKYFSYFLFALTGVWLLLMLVLRKRIQLALKITKEASKAVASMKLLLIWPVIQTLGVLCFLIPWIIYVLYLASSG-----TVEVNNG---IKTFTYSDNIRYAGLYLLFCWFWTSEFVIAMGQIVVAMAVSFWYFTMDRSSIGXXXXXXXXXXXXXXHTGTAAFGSLIIAIIKTIRAVIAYMQKKAKQSGNKLAQIVLCVIQCCMWCLEKCMKFLNKNAYIQTAIFGKSFCSAAKAAFFLIARNILRIAAVSLVGDFVLLIGRI 593
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A7S2D002_9STRA (Choline transporter-like protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D002_9STRA) HSP 1 Score: 281 bits (718), Expect = 3.060e-86 Identity = 148/261 (56.70%), Postives = 196/261 (75.10%), Query Frame = 1
Query: 25 LSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATL-ETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGK 804
L+Y + G+ +WA ++ R RI +A+ IT+EAARAV AM LI FP+VQ+A LL+F +PWV + +YLASSG + T+ T I VK F+Y+D + LY+LF +FWT++FI+A+GQ+V+A+AV+ WYF RDK+TIG+ TV SV+ + YH G+AAFGSLIIAIIKTIRAV+ Y+Q K N++ AVLCC+ XXX EKCMKF+NKNAYIQ AIFGYSFC A+KAF+LI RNI+R+ AVG+VSE+V I+GK
Sbjct: 331 LAYILLGIAALWACVICCLRSRIMLALGITQEAARAVAAMPFLIFFPLVQAAGLLVFFIPWVIFSIYLASSGTVVAETVCYTTSTCIQVKNFEYSDEQLGAGLYMLFIWFWTTQFIIAIGQLVIALAVSQWYFTRDKSTIGNVTVFDSVRMAFRYHMGSAAFGSLIIAIIKTIRAVIMYLQGKAAKAKNRLASAVLCCIQCCXXXVEKCMKFINKNAYIQIAIFGYSFCKAARKAFWLILRNILRIAAVGIVSEIVSIMGK 591
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A8J2WZ97_9STRA (Choline transporter-like protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZ97_9STRA) HSP 1 Score: 276 bits (705), Expect = 1.820e-84 Identity = 153/271 (56.46%), Postives = 193/271 (71.22%), Query Frame = 1
Query: 4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHN----KILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGK 804
Q N YL+Y LC +WA + RKRI +AI ITKEAA+ + M ++I+FPVVQ AL++F++PW Y L+LASSGE +ET G ++ Y + + Y++F YFW+SEFI+A+GQI++A+AV+TWYF RDK IG+ TVI S + +YH GTAAFGSLIIAIIKTIRA++ YIQKK K+ N KI AVLCC+ XXXX EKCMKF+NKNAYIQTAIFGY FC AK AFFLI RNI R+MA+ +VS VL+LGK
Sbjct: 341 QANGMLYLAYFCAALCALWACTICCLRKRIALAIGITKEAAKCIATMPIIIVFPVVQVMALIVFVIPWFIYCLFLASSGE-----METVKG---ARQMVYDETTFKAGWYMIFVYFWSSEFIIALGQIILALAVSTWYFTRDKGKIGNSTVIWSFRQGAWYHWGTAAFGSLIIAIIKTIRAMIKYIQKKCKNIKNPVAKKIAMAVLCCIDCXXXXIEKCMKFINKNAYIQTAIFGYHFCKAAKCAFFLILRNIARIMALSIVSGFVLLLGK 603
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: A0A812RYG8_SYMMI (Choline transporter-like protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RYG8_SYMMI) HSP 1 Score: 265 bits (676), Expect = 1.670e-82 Identity = 143/268 (53.36%), Postives = 189/268 (70.52%), Query Frame = 1
Query: 4 QINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITT-ATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGK 804
++ + LS F L ++ L+ RKRI +A+ I KEA+RA+ AM +L+L PV Q+ A+++FL+PW Y +YLASSG+I T +T G K +Y N R + LYLLF +FWTSEFI+A+GQI AMA++ WYF RDK + G+GTVI + +T+ FYH GTAAFGSLIIAIIKTIRA++AY+QKK K + N++ VL + EKCM+FLNKNAYIQTAI+GYSFC + AFFLIARN++RV+AV V + VL LGK
Sbjct: 121 EVRTLQALSIIGFVLTGLYVCLLCVMRKRIVLALGIVKEASRALAAMPILVLMPVFQALAIVVFLVPWTIYAIYLASSGDIEVHETSDTPGDETQYKTMEYDQNTRLAFLYLLFCWFWTSEFILAVGQITSAMAISAWYFTRDKKSEGNGTVIWAFRTTCFYHLGTAAFGSLIIAIIKTIRAILAYLQKKAKKSGNQLALCVLRMLQCCMWCVEKCMRFLNKNAYIQTAIYGYSFCKACRSAFFLIARNVLRVIAVSYVGDFVLFLGK 388
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Match: B8C577_THAPS (Choline transporter-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C577_THAPS) HSP 1 Score: 254 bits (648), Expect = 1.840e-80 Identity = 134/248 (54.03%), Postives = 187/248 (75.40%), Query Frame = 1
Query: 64 LLMLWFRKRIKMAIAITKEAARAVNAMKLLILFPVVQSAALLLFLLPWVTYILYLASSGEITTATLETAGGTITVKEFKYTDNIRYSALYLLFAYFWTSEFIVAMGQIVVAMAVATWYFCRDKNTIGSGTVICSVKTSLFYHSGTAAFGSLIIAIIKTIRAVVAYIQKKTKDTHNKILQAVLCCVXXXXXXXEKCMKFLNKNAYIQTAIFGYSFCTGAKKAFFLIARNIMRVMAVGVVSEVVLILGKV 807
LL L+ RKRI++A+ KE ++A+ AM +I+FPV+Q L++F++ W Y+ +LAS G+ +T+ + I+V+ F++++ ++ YLLF +FWTS+FI+AMG+I+ AM+V+ WYF RDK+ IGS TV S+ TS++YHSGTAAFGSLIIAIIK IR+ +AY+Q+K ++ + I +AVLCC XXXXX EKCM+FLNKNAYIQTAIFG SFCT AK+AFFLI RN R+ A+ VS V+ +GKV
Sbjct: 4 LLFLFMRKRIQLAMGCVKETSKAITAMPGIIVFPVIQGLGLMVFMIAWCVYVAHLASMGDFSTSQYDAGPIKISVRTFEFSNFVKQCGWYLLFCFFWTSQFILAMGEIIFAMSVSKWYFSRDKSNIGSATVWTSIATSMWYHSGTAAFGSLIIAIIKMIRSFLAYLQRKAEEMDSSIAKAVLCCFQXXXXXLEKCMRFLNKNAYIQTAIFGSSFCTSAKEAFFLILRNAARIAAITYVSGGVMFIGKV 251 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1141.1238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1141.1238.1 >prot_L-elsbetiae_contig1141.1238.1 ID=prot_L-elsbetiae_contig1141.1238.1|Name=mRNA_L-elsbetiae_contig1141.1238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=270bp GQINAAKYLSYAMFGLCVVWALLMLWFRKRIKMAIAITKEAARAVNAMKLback to top mRNA from alignment at L-elsbetiae_contig1141:4577..7345+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1141.1238.1 ID=mRNA_L-elsbetiae_contig1141.1238.1|Name=mRNA_L-elsbetiae_contig1141.1238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2769bp|location=Sequence derived from alignment at L-elsbetiae_contig1141:4577..7345+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1141:4577..7345+ >mRNA_L-elsbetiae_contig1141.1238.1 ID=mRNA_L-elsbetiae_contig1141.1238.1|Name=mRNA_L-elsbetiae_contig1141.1238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1620bp|location=Sequence derived from alignment at L-elsbetiae_contig1141:4577..7345+ (Laminarionema elsbetiae ELsaHSoW15)back to top |