mRNA_L-elsbetiae_contig11409.1235.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11409.1235.1
Unique NamemRNA_L-elsbetiae_contig11409.1235.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11409.1235.1 vs. uniprot
Match: A0A6H5JZZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.000e-26
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 ITLLNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMMMDMPLDGRDQMTPR 162
            ITL NLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMMMDMPLDGR+QMTPR
Sbjct:  457 ITLQNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMMMDMPLDGREQMTPR 510          
BLAST of mRNA_L-elsbetiae_contig11409.1235.1 vs. uniprot
Match: A0A836CG63_9STRA (Calcium-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG63_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 7.410e-10
Identity = 26/41 (63.41%), Postives = 36/41 (87.80%), Query Frame = 1
Query:    1 ITLLNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMMM 123
            IT+ NL+KIFG+EEHAREIMGDV+++ +G I Y+EF+ MM+
Sbjct:  444 ITVDNLIKIFGSEEHAREIMGDVDINSDGVIEYEEFRQMML 484          
BLAST of mRNA_L-elsbetiae_contig11409.1235.1 vs. uniprot
Match: D8LI14_ECTSI (Calcium-dependent protein kinase, isoform 2 (CDPK 2) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI14_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 9.990e-10
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1
Query:    1 ITLLNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMM 120
            ITL NLV IFG+E+HAREI+GD++L G+G I++DEF+ MM
Sbjct:  333 ITLANLVSIFGSEDHAREIVGDIDLDGDGEISFDEFRQMM 372          
BLAST of mRNA_L-elsbetiae_contig11409.1235.1 vs. uniprot
Match: A0A6H5L236_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L236_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.010e-9
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1
Query:    1 ITLLNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMM 120
            ITL NLV IFG+E+HAREI+GD++L G+G I++DEF+ MM
Sbjct:  459 ITLANLVSIFGSEDHAREIVGDIDLDGDGEISFDEFRQMM 498          
BLAST of mRNA_L-elsbetiae_contig11409.1235.1 vs. uniprot
Match: A0A7S4D8Z4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8Z4_HETAK)

HSP 1 Score: 52.8 bits (125), Expect = 1.340e-6
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   16 LVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMMMDMPLDGRDQMTP 159
            LV IFG+ EHARE +G++++ G G+I YDEFK MM+ + L   +   P
Sbjct:  279 LVAIFGSLEHAREAVGEIDIDGNGSIEYDEFKEMMLQVNLASAEAPAP 326          
BLAST of mRNA_L-elsbetiae_contig11409.1235.1 vs. uniprot
Match: A0A418E6X0_9STRA (EF-hand domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E6X0_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.840e-6
Identity = 24/54 (44.44%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 ITLLNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMMMDMPLDGRDQMTPR 162
            IT  +LV+  G+E+HA+E+M +++ +G+GAI++DEF  MM    L   D+ TPR
Sbjct:   12 ITKDDLVRFMGSEDHAQEVMDEIDTNGDGAISFDEFCAMMQHKNLG--DEGTPR 63          
BLAST of mRNA_L-elsbetiae_contig11409.1235.1 vs. uniprot
Match: A0A3L6V6M5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V6M5_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 3.980e-6
Identity = 24/54 (44.44%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 ITLLNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMMMDMPLDGRDQMTPR 162
            IT  +LV+  G+E+HA+E+M +++ +G+GAI++DEF  MM    L   D+ TPR
Sbjct:   50 ITKDDLVRFMGSEDHAQEVMDEIDTNGDGAISFDEFCAMMQHKNLG--DEGTPR 101          
BLAST of mRNA_L-elsbetiae_contig11409.1235.1 vs. uniprot
Match: A0A7S1B6U7_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6U7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.760e-6
Identity = 19/40 (47.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    1 ITLLNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMM 120
            IT  +++++FG+E+ A+E+MGD++L G+G I+Y EF +MM
Sbjct:  586 ITRNDMIRVFGSEKQAQEVMGDIDLDGDGVISYKEFSSMM 625          
BLAST of mRNA_L-elsbetiae_contig11409.1235.1 vs. uniprot
Match: A0A7S3YAY0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAY0_HETAK)

HSP 1 Score: 49.7 bits (117), Expect = 9.940e-6
Identity = 22/42 (52.38%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    1 ITLLNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMMMD 126
            IT  +LV+IFG+EE A +I+GDV+   +G I+Y+EFK MM++
Sbjct:   96 ITREDLVRIFGSEEQAHQILGDVDRDQDGQISYEEFKRMMVE 137          
BLAST of mRNA_L-elsbetiae_contig11409.1235.1 vs. uniprot
Match: A0A3R7XZJ6_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7XZJ6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.660e-5
Identity = 24/54 (44.44%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 ITLLNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMMMDMPLDGRDQMTPR 162
            IT  +LV+  G+E+HA+E+M +++ +G+GAI++DEF  MM    L   D+ TPR
Sbjct:  466 ITKDDLVRFMGSEDHAQEVMDEIDTNGDGAISFDEFCAMMQHKNLG--DEGTPR 517          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11409.1235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JZZ8_9PHAE3.000e-2696.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CG63_9STRA7.410e-1063.41Calcium-dependent protein kinase n=1 Tax=Tribonema... [more]
D8LI14_ECTSI9.990e-1065.00Calcium-dependent protein kinase, isoform 2 (CDPK ... [more]
A0A6H5L236_9PHAE1.010e-965.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4D8Z4_HETAK1.340e-647.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A418E6X0_9STRA1.840e-644.44EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A3L6V6M5_9STRA3.980e-644.44Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S1B6U7_9STRA4.760e-647.50Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S3YAY0_HETAK9.940e-652.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A3R7XZJ6_9STRA1.660e-544.44Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11409contigL-elsbetiae_contig11409:5735..5896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815348.9239805-CDS-L-elsbetiae_contig11409:5734..58961622815348.9239805-CDS-L-elsbetiae_contig11409:5734..5896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11409 5735..5896 -
1691682853.9522796-CDS-L-elsbetiae_contig11409:5734..58961691682853.9522796-CDS-L-elsbetiae_contig11409:5734..5896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11409 5735..5896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11409.1235.1prot_L-elsbetiae_contig11409.1235.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11409 5735..5896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11409.1235.1

>prot_L-elsbetiae_contig11409.1235.1 ID=prot_L-elsbetiae_contig11409.1235.1|Name=mRNA_L-elsbetiae_contig11409.1235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
ITLLNLVKIFGAEEHAREIMGDVNLSGEGAINYDEFKTMMMDMPLDGRDQ
MTPR
back to top

mRNA from alignment at L-elsbetiae_contig11409:5735..5896-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11409.1235.1 ID=mRNA_L-elsbetiae_contig11409.1235.1|Name=mRNA_L-elsbetiae_contig11409.1235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=162bp|location=Sequence derived from alignment at L-elsbetiae_contig11409:5735..5896- (Laminarionema elsbetiae ELsaHSoW15)
ATTACCCTCCTGAACCTGGTGAAAATCTTCGGCGCGGAAGAGCACGCGCG TGAGATAATGGGCGACGTGAACCTGTCCGGCGAGGGAGCGATCAACTACG ACGAGTTCAAGACCATGATGATGGACATGCCGCTCGATGGGAGAGACCAG ATGACGCCCCGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11409:5735..5896-

>mRNA_L-elsbetiae_contig11409.1235.1 ID=mRNA_L-elsbetiae_contig11409.1235.1|Name=mRNA_L-elsbetiae_contig11409.1235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig11409:5735..5896- (Laminarionema elsbetiae ELsaHSoW15)
ATTACCCTCCTGAACCTGGTGAAAATCTTCGGCGCGGAAGAGCACGCGCG
TGAGATAATGGGCGACGTGAACCTGTCCGGCGAGGGAGCGATCAACTACG
ACGAGTTCAAGACCATGATGATGGACATGCCGCTCGATGGGAGAGACCAG
ATGACGCCCCGCATTACCCTCCTGAACCTGGTGAAAATCTTCGGCGCGGA
AGAGCACGCGCGTGAGATAATGGGCGACGTGAACCTGTCCGGCGAGGGAG
CGATCAACTACGACGAGTTCAAGACCATGATGATGGACATGCCGCTCGAT
GGGAGAGACCAGATGACGCCCCGC
back to top