mRNA_L-elsbetiae_contig11409.1234.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11409.1234.1
Unique NamemRNA_L-elsbetiae_contig11409.1234.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11409.1234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11409contigL-elsbetiae_contig11409:1154..2005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size708
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11409.1234.1prot_L-elsbetiae_contig11409.1234.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11409 1319..1720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815348.8487155-UTR-L-elsbetiae_contig11409:1153..13181622815348.8487155-UTR-L-elsbetiae_contig11409:1153..1318Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11409 1154..1318 +
1691682853.8970394-UTR-L-elsbetiae_contig11409:1153..13181691682853.8970394-UTR-L-elsbetiae_contig11409:1153..1318Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11409 1154..1318 +
1622815348.8722396-UTR-L-elsbetiae_contig11409:1720..17971622815348.8722396-UTR-L-elsbetiae_contig11409:1720..1797Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11409 1721..1797 +
1691682853.92532-UTR-L-elsbetiae_contig11409:1720..17971691682853.92532-UTR-L-elsbetiae_contig11409:1720..1797Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11409 1721..1797 +
1622815348.8915293-UTR-L-elsbetiae_contig11409:1941..20051622815348.8915293-UTR-L-elsbetiae_contig11409:1941..2005Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11409 1942..2005 +
1691682853.9397986-UTR-L-elsbetiae_contig11409:1941..20051691682853.9397986-UTR-L-elsbetiae_contig11409:1941..2005Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11409 1942..2005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815348.860541-CDS-L-elsbetiae_contig11409:1318..17201622815348.860541-CDS-L-elsbetiae_contig11409:1318..1720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11409 1319..1720 +
1691682853.9122534-CDS-L-elsbetiae_contig11409:1318..17201691682853.9122534-CDS-L-elsbetiae_contig11409:1318..1720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11409 1319..1720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11409.1234.1

>prot_L-elsbetiae_contig11409.1234.1 ID=prot_L-elsbetiae_contig11409.1234.1|Name=mRNA_L-elsbetiae_contig11409.1234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MRNERQRFQPQNRFSSHQHSARRRVHTALTTATHLYYSRSTDQVKTTVIS
VDDGKLNPTQYVPSHTASTVCIMRVHVYYYFRSIVLRKKYPATTVSSVRR
CSLTYVLTSEKRNERKNLDDRRAPRTDENNAQT*
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mRNA from alignment at L-elsbetiae_contig11409:1154..2005+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11409.1234.1 ID=mRNA_L-elsbetiae_contig11409.1234.1|Name=mRNA_L-elsbetiae_contig11409.1234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig11409:1154..2005+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGAAGGGTTTGGCAGTGCGATGCCGAGATCGAGCAAATAAATTAGGGC
CGAGAGACACAGCCGTTGAAGAGGAAGAGCGGCACGGGCTTTTTTTGTTC
ACTGCATGCTTCTCGTATGAATGTAAATAGGACATTACATTTCACAACTC
CGTATTGTAGTCGGAATGCGGAACGAACGCCAACGCTTCCAGCCGCAGAA
TCGTTTCTCGTCTCACCAACACTCTGCAAGAAGAAGAGTTCATACCGCAT
TAACAACAGCAACTCATCTATATTATAGTCGATCGACAGATCAGGTGAAG
ACCACTGTTATATCAGTCGATGACGGGAAACTCAACCCCACGCAATACGT
ACCATCGCATACCGCATCTACCGTGTGCATCATGCGTGTGCATGTGTACT
ACTACTTTCGAAGCATAGTTCTAAGGAAAAAGTACCCTGCTACTACCGTT
TCCTCTGTGAGGCGGTGCTCACTCACGTACGTACTTACTTCAGAAAAACG
TAACGAGAGAAAGAACCTAGATGACCGGCGAGCCCCAAGAACAGACGAAA
ATAATGCACAGACATAAATAGAATGCACAAACAACTCCATGAGGCGGGCG
CCCACGCGTGGTTCCGACACACACCAGGTGAACCACCCCCCCCCGCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTC
CACCCCCCCCAACCCNNNNNGAATTCTCAAACTCGGAAAAACAAGAATCC
AATACAATCGTGACCATTAAACCAAAAACACTATTGAGTATCTTCACCGA
TCAATTCATCATGCATCCCATCAGCTCATTTTACTCCATTTGCGTCGGAA
AA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11409:1154..2005+

>mRNA_L-elsbetiae_contig11409.1234.1 ID=mRNA_L-elsbetiae_contig11409.1234.1|Name=mRNA_L-elsbetiae_contig11409.1234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig11409:1154..2005+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAACGAACGCCAACGCTTCCAGCCGCAGAATCGTTTCTCGTCTCA
CCAACACTCTGCAAGAAGAAGAGTTCATACCGCATTAACAACAGCAACTC
ATCTATATTATAGTCGATCGACAGATCAGGTGAAGACCACTGTTATATCA
GTCGATGACGGGAAACTCAACCCCACGCAATACGTACCATCGCATACCGC
ATCTACCGTGTGCATCATGCGTGTGCATGTGTACTACTACTTTCGAAGCA
TAGTTCTAAGGAAAAAGTACCCTGCTACTACCGTTTCCTCTGTGAGGCGG
TGCTCACTCACGTACGTACTTACTTCAGAAAAACGTAACGAGAGAAAGAA
CCTAGATGACCGGCGAGCCCCAAGAACAGACGAAAATAATGCACAGACAT
AAATGCGGAACGAACGCCAACGCTTCCAGCCGCAGAATCGTTTCTCGTCT
CACCAACACTCTGCAAGAAGAAGAGTTCATACCGCATTAACAACAGCAAC
TCATCTATATTATAGTCGATCGACAGATCAGGTGAAGACCACTGTTATAT
CAGTCGATGACGGGAAACTCAACCCCACGCAATACGTACCATCGCATACC
GCATCTACCGTGTGCATCATGCGTGTGCATGTGTACTACTACTTTCGAAG
CATAGTTCTAAGGAAAAAGTACCCTGCTACTACCGTTTCCTCTGTGAGGC
GGTGCTCACTCACGTACGTACTTACTTCAGAAAAACGTAACGAGAGAAAG
AACCTAGATGACCGGCGAGCCCCAAGAACAGACGAAAATAATGCACAGAC
ATAA
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