mRNA_L-elsbetiae_contig11396.1219.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11396.1219.1
Unique NamemRNA_L-elsbetiae_contig11396.1219.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11396.1219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11396contigL-elsbetiae_contig11396:805..5159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size329
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815347.4193528-CDS-L-elsbetiae_contig11396:804..10921622815347.4193528-CDS-L-elsbetiae_contig11396:804..1092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11396 805..1092 +
1691682852.798364-CDS-L-elsbetiae_contig11396:804..10921691682852.798364-CDS-L-elsbetiae_contig11396:804..1092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11396 805..1092 +
1622815347.4294806-CDS-L-elsbetiae_contig11396:5120..51591622815347.4294806-CDS-L-elsbetiae_contig11396:5120..5159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11396 5121..5159 +
1691682852.8112097-CDS-L-elsbetiae_contig11396:5120..51591691682852.8112097-CDS-L-elsbetiae_contig11396:5120..5159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11396 5121..5159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11396.1219.1prot_L-elsbetiae_contig11396.1219.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11396 805..5159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11396.1219.1

>prot_L-elsbetiae_contig11396.1219.1 ID=prot_L-elsbetiae_contig11396.1219.1|Name=mRNA_L-elsbetiae_contig11396.1219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
SQRVLLRHPPWPGESSVWIFCPVGGRREREGSRFRKKAERRQQGQGQGGC
RICQHLAAGTLCCASTTAVVVLEVYKTAERGVARGSRGSSGLSASQGRYG
TPSTKTRRH
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mRNA from alignment at L-elsbetiae_contig11396:805..5159+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11396.1219.1 ID=mRNA_L-elsbetiae_contig11396.1219.1|Name=mRNA_L-elsbetiae_contig11396.1219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4355bp|location=Sequence derived from alignment at L-elsbetiae_contig11396:805..5159+ (Laminarionema elsbetiae ELsaHSoW15)
TCACAGAGGGTATTGCTACGGCACCCACCCTGGCCGGGAGAGTCATCGGT
TTGGATCTTTTGTCCGGTGGGTGGCAGGCGGGAGAGAGAGGGGAGCAGAT
TTCGGAAGAAAGCCGAGAGGAGACAACAAGGACAAGGGCAGGGGGGCTGC
CGTATTTGTCAACACCTTGCTGCAGGCACCCTTTGCTGTGCCTCAACTAC
TGCTGTGGTGGTGTTGGAGGTGTATAAGACGGCGGAGCGGGGCGTTGCTC
GAGGGTCACGAGGGTCGTCTGGCTTGAGCGCATCACAGGTGAGAGCGAGA
GAAACGTTGTGGAGCCATGCGCGCTTTTGAAAAATGGATGGAGATTAGGC
CGAGATTTTCGGTGACAAAACGATTATGCAATATCCCGGTGCGGTCGGTT
ACTGTGTGTATAGGTGGCCGGTAGTCGGCATAAAACCTTACATTCCGGTC
GCCACCCAGCGGGGTGGCAGCATACAGGTCGGGCGCTGATGACGGTGTCG
GTGTCGGCGTGCGGGTGAAAACAACGAACTCAGAAATATGACTGCTGGAA
AATCATCCGTCCGAAGTTCGTTGTGAGCGCAACAGGCAGCAGCAGCAGAC
CGTTGATCAGTTGATCATCCACCCTCTCCCTCTCTCGTGAGTCAACATGG
CTATAAATGAGGTCCGCGCTTGCTGTGTGAAATGCAGAAAAGCCGGTTGG
CATGCCTACCTTCAACGTGTCCACAGGAGAGAAAGAACAGAGATGCATTT
TTTCTTTTCGCGGCGTGTGACGCGTGACGAAGTGTTTTTCCGGAGAGAGA
ACCAACCGATCGCCGCTTGGCGATCGAGCTTACACCTGTGTCGGCTTCTA
TCTAGTCTACTTTATGTCCTTGGTACACATGTGTGTACCACCACCACACT
TCTTGCCACGCAAGAGATTGAGGAGATTTTTGATAAGCCTTCCCTGAAAA
TGGCGATCAAGTAGCTTGCCACCCCTTTTGATTGTATGCTCTTCTGCGTT
GTGGGAAGACAGATAGATACCATATCGTACAATACATGCGAAGAGTTTCC
CCTCTTCAATCGCAATGCAGTTTTTTGAGCCAGTCGAGATCGAGCGTGGA
ACACAAAGAAAACGAGGTGGGGTGGAGGAAAAGTTGTGTATTTTCCCCAG
CTTCTCCAGAAGCAAGCAAACCACATGTCGTCGGCCCCTCGTATCTCCAG
GACACACATATGGTACATACATATGTACATACATACGTACCACACGTCCG
AAAATGTGTTGTTCCTCTCGTAATAAATGCGAGTCATCGCGCCCCCCCCG
TCTCGGTTTTTTTCAAAGGTCGATTAGTCCTCCGCGAAAAAAGGGTGCAA
CACCCAAACGGCTACAACGGCTACAATACACGCGTCCAAAAACTGACGGC
AGGCGGTATGTACTGGGTATTTTCCACATGACAATAATGGGGGTACGGGC
CGGGCCATACAAAGTGGGCATTTTACATACGCTCGAAATACTGGCGGGTG
CGGGGTGTAGTGGCCCCCCTTGGTAGGCATGGCGATGACGAGCAGCGGCC
CAAGCCTATCCTCAAGACCACAAAGAGTACCCGAGACATAAATACGCACA
CCTGTGAAACAGAGTGCCATGTCTTCATACCTGACGTGTCCTCCCAAAAA
CAAAAAATTGACAACATTACAACATCAACACCCACATGTACAAGTAAGTG
GTTGGGCCTGCTGTTTGGCTTCGGAGAGAATGGGCAGCAGAGACCCAATG
CCCCCTGTGTGAAGGGGGTTCAGAACCAGCGCTGTGTTCCGAGAAGCAGC
AAAGGAGACACATCTGTGGCGCTTGGTGGCAGAAGAGAGGCACTCGCTAC
ATACCGTCCGTAACAGACCTAACTCCGTATTTCGTGGCTGGGCCGTTATT
TTTATTTTCCCCGCCGGATATGAGTTGGCTACGGCGGGGTTTATTGACGC
TTGCGCACTTCCAGCACGGTTCTGTACTCGTGCATCGGGCTCAGCAACAC
CAACGACAGCAGAGGAGATACCACCAACGTCGACAACCACAGCAAAAGCA
ACACCAACATCAACAACAGCAACCACAGCAATAACACCACCAACACCACC
AACAACAACAACAACAGCAAAAACAAAAGCAACAACCACTACAACAAACA
ACAACAACAACAGCAGCAGCAAAAACAACGACAACAACAACAACAACAAC
AACAACAACACAAACCGTGGACAACAGAAAACCACGAAGTGGTTATGCGG
CTTGCTGATTTTGTGCCAGTAGTACGGGCGGTGAGGGAGGATTGGTGGGT
CTACAGCAGAAGTCCCCCTGGAGGAACGCCTCTTTTCATTTTTCACAGGT
AGAACGCCTATTTCCTTTTTTACAGGTTGAACGTACAATAGAGCGCTCGA
CATTTGTAGATAATTATTTTTAATCAGTATCACCAACAACCTAACCAATT
CAACCAGCAAGCACACGGACGACGGCGAGACAACCCCCGCCCAAACCCGC
CCCGCCCTTCGATTCATTCGGTAGAACTAGACGCTCTGCACACGCGGCTT
CTTTTATATTCACACGGCGGGGCACCGGAGTGAGCGAGATCACGCACACA
CATACCTACGCATGGGGCCCCGTGGCGAATATCTTCATGTGTACCAGTGT
TACTGGAACTAAATTTCAAGGGGGCGCATATGCGGGAGAATTTCAACGGG
GCGCATTCTGTCACGGGCCAAAGGCACAGGGCCTCAGTATACCCACGCAT
AAAGAAGCCGATATCTCAGCTTGCAGGAAGTGATCCAAAACGCGACTTTG
AGGCTGTGTAGTAGGCATGTGTGGCTACAGAGCGGGCCAAAAATCTAGGT
GACAGCTTTTGCTTGGCATTTAGAGGTGGCATCGCAAACAAATGAAGCGG
AAGAGAGACGGAGAGCCGAAAAAAAGAGAGCCAGCTGCGAGACAGACGAG
CACGATTCCCATACGAAACGCAGCTTCTTGATCCCTAAAGAAATCCACCG
CAAGACCGCGTACGTCGGCAAGAATAGGGTCTCAGATGTGCAGAGCACCC
ACTGAAGTGAGCTAAATCGTTGCTCGGTAATTATTATACGTGCTGCTGCC
GTCTGCTCCTGCTGGCCTGGCCGAGGGCACTAACGTGTGTCGGAAGGCAG
CTCTGATTCGACACTCACAGAGCAATTCTGAGTTTAAAATCTGCACCGGC
ACTAGCTGTGAGCAGTATATCGCACCCCCTCTAGTTTGTATGGTCTGGGA
TAAGTTATGTGAACTCCTAGGGCTGGCACAGTGGTGCCAGGCTGGACCGG
AGGGGGCCGGGGCTTTTGGTGGTGGGTCTTTAATGCGCGTGCTTTTTGTC
TGCGAGTCCCCGACGAACTTGTGATCGGTGTAAATCATCCCCACGCCGTG
GCTGGAGCATCGGTTTGCTTCGTTCTTTTTCCTACACCCTCGAGAAGTGC
AGGAGCTACAGACCTGTTATTTCCTCACCCCCAACACGCCACTCTGCAGC
GAGAACCCCAAGTAAAGGAGCGCAACAAGTGCCCCCTTAAAAAGCTAATC
CAAGTAACACTGGTACACACCCCGCCGGACTGCAAAAAATACCACCCATG
CGCACGTCAAGCAGGGTTCCCCCCCCAAGCAATCTAACAAACAAGCGACG
AGACTTTTGAACGCACTCCGGGTTTTGTGCCACTGCTGTCCGGGGCGGTG
AGGGAGAATTAGTGTTTTCTACATATGTACATACAAAGAGTCTACCCCCC
GCCGGAACAACTTCTTCACAGGAAGGACTACCGTAGGTGACACAAGATAC
CACACCCCCTTGGCCGAATTTTAGAGCTTCATTATTCCGTAACGAAGACG
GCGCCAGCACCAAACGACAGCTTTTCGAACAGCCCTCGACTAGATCTTTC
CAACGCCACCCCTTCCGGCGCTGGCACCCTCTTCACCACGGAGTCATGCA
GCTCTAAAATTCGGTCCGGGGGGTGTGGTATCTTGTGTCACATACGGTAC
TTCTGCTGTCGGACTTGTCAGGATAATTTTGTCTCTGGGGCTGACGACAC
CAAGGGGCCTTGACTCCGATTTCCCTGGTTTTGGGATCCTTACTCTTCTG
GCATTGCTAAAAGAGAATTTACCCGCTCTCAAGTCTTTCGAAGTTTTATC
TACCCAATGCAGTCCCGAGACCGTAATAAATCGTTAAAATAGTACTCCAA
TGTATGTACAGCAGTAGTAGAGCTTCCAGCCGTGGCGCCAAATATTACGT
TTTTTTGTTTTCCCTCTGACCCGAAACCCCCCTGTGTCCCCGTGGATCAT
CGTGCGCTGCTGGCAGGGTAGGTACGGTACCCCGAGCACAAAAACGAGGC
GGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11396:805..5159+

>mRNA_L-elsbetiae_contig11396.1219.1 ID=mRNA_L-elsbetiae_contig11396.1219.1|Name=mRNA_L-elsbetiae_contig11396.1219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig11396:805..5159+ (Laminarionema elsbetiae ELsaHSoW15)
TCACAGAGGGTATTGCTACGGCACCCACCCTGGCCGGGAGAGTCATCGGT
TTGGATCTTTTGTCCGGTGGGTGGCAGGCGGGAGAGAGAGGGGAGCAGAT
TTCGGAAGAAAGCCGAGAGGAGACAACAAGGACAAGGGCAGGGGGGCTGC
CGTATTTGTCAACACCTTGCTGCAGGCACCCTTTGCTGTGCCTCAACTAC
TGCTGTGGTGGTGTTGGAGGTGTATAAGACGGCGGAGCGGGGCGTTGCTC
GAGGGTCACGAGGGTCGTCTGGCTTGAGCGCATCACAGTCACAGAGGGTA
TTGCTACGGCACCCACCCTGGCCGGGAGAGTCATCGGTTTGGATCTTTTG
TCCGGTGGGTGGCAGGCGGGAGAGAGAGGGGAGCAGATTTCGGAAGAAAG
CCGAGAGGAGACAACAAGGACAAGGGCAGGGGGGCTGCCGTATTTGTCAA
CACCTTGCTGCAGGCACCCTTTGCTGTGCCTCAACTACTGCTGTGGTGGT
GTTGGAGGTGTATAAGACGGCGGAGCGGGGCGTTGCTCGAGGGTCACGAG
GGTCGTCTGGCTTGAGCGCATCACAGGGTAGGTACGGTACCCCGAGCACA
AAAACGAGGCGGCACGGTAGGTACGGTACCCCGAGCACAAAAACGAGGCG
GCAC
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