mRNA_L-elsbetiae_contig11395.1218.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11395.1218.1
Unique NamemRNA_L-elsbetiae_contig11395.1218.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig11395.1218.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.730e-23
Identity = 69/169 (40.83%), Postives = 95/169 (56.21%), Query Frame = 1 
Query:  427 CLSAFLAVLRDTGDDGNQHWITSIKELQMASLLFCAACRDVPTRRLGVSRRIPSHLLSAADDGDTAAMKIPFSLGDEGSEKKGWSRVPRLRARAVTWRLQSPAALTRPMLAVRDAEEIRF--IFDCRFNDGSSSLANTAWPRQLRVLEF--HEFFNQAIEGVEFPPSLE 921
            CLS+ +  L +T D  +  W TS KELQ ASL FC ACR+ P   L V  +IP +LL+AAD    A    P  L         W+RVPRLRAR+VTW +++ A L  P+ A+ D + + F   FD        SL    WPR+L+++EF     FNQ +E +++P SL+
Sbjct:   14 CLSSLIVALNETCDGTS--WYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAAD----APPPHPKRLC--------WTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFD-------GSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQ 161
[Close]
BLAST of mRNA_L-elsbetiae_contig11395.1218.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.950e-21
Identity = 70/167 (41.92%), Postives = 90/167 (53.89%), Query Frame = 1 
Query:  427 CLSAFLAVLRDTGDDGNQHWITSIKELQMASLLFCAACRDVPTRRLGVSRRIPSHLLSAADDGDTAAMKIPFSLGDEGSEKKGWSRVPRLRARAVTWRLQSPAALTRPMLAVRDAEEIRFIFDCRFNDGSSSLANTAWPRQLRVLEFHEF--FNQAIEGVEFPPSLE 921
            CL A +  L +T D   + W TS KELQ+ASL FC ACR+  T  L V  +IP  LL++AD    A    P  L         W+RVPRLR+R VTW + + A L  P+ A+ D E + F     F D   SL    WP  LR +EFH    F+Q IE V++PP L+
Sbjct:   51 CLEALIVALNETCD--GKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASAD----APPPHPKRLC--------WTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEF--GDAFGD---SLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQ 198
[Close]
BLAST of mRNA_L-elsbetiae_contig11395.1218.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.650e-18
Identity = 69/177 (38.98%), Postives = 93/177 (52.54%), Query Frame = 1 
Query:  427 CLSAFLAVLRDTGDDGNQHWITSIKELQMASLLFCAACRDVPTRRLGVSRRIPSHLLSAADDGDTAAMKIPFSLGDEGSEKKGWSRVPRLRARAVTWRLQSPAALTRPMLAVRDAEEIRFIFDCRFNDGSSSLANTAWPRQLRVLE---------FHE--FFNQAIEGVEFPPSLEK 924
            CL+A +  L +T D   + W TS KE Q+ASL FC ACR+  T  L V  R P  LL+AAD    A    P  L          +RVPRLRAR VTW + + A L   + ++ DA+ + F+    F D   SL   AWPR+L+ +E         FH+   F+Q I GV +P +LE+
Sbjct:   12 CLNAIIVALNETSD--GKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAAD----APPPHPKRLCG--------TRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVR--AFED---SLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQ 169
[Close]
BLAST of mRNA_L-elsbetiae_contig11395.1218.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.610e-17
Identity = 69/171 (40.35%), Postives = 89/171 (52.05%), Query Frame = 1 
Query:  427 CLSAFLAVLRDTGDDGNQHWITSIKELQMASLLFCAACRDVPTRRLGVSRRIPSHLLSAADDGDTAAMKIPFSLGDEGSEKKGWSRVPRLRARAVTWRLQSPAALTRPMLAVRDAEEIRFIFDCRFNDGSS---SLANTAWPRQLRVLEFHEF--FNQAIEGVEFPPSLEK 924
            CL+A    L +T D   + W TS KELQ+ASL FC ACR   T  L V  RIP  LL+AAD       + P  L           RVPRLRAR VTW + + A L  P+ A+ D + + F        GS+   SL    WPR+L  + FH F  FN  I+ V++P SL++
Sbjct:   36 CLNAIYVALGETRD--GKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAAD----GPPQHPKRLSRR--------RVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDF--------GSAFEGSLEAVTWPRRLESIAFHNFSPFNTPIDLVKWPASLKR 184
[Close]
BLAST of mRNA_L-elsbetiae_contig11395.1218.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.880e-14
Identity = 61/170 (35.88%), Postives = 82/170 (48.24%), Query Frame = 1 
Query:  421 SRCLSAFLAVLRDTGDDGNQHWITSIKELQMASLLFCAACRDVPTRRLGVSRRIPSHLLSAADDGDTAAMKIPFSLGDEGSEKKGWSRVPRLRARAVTWRLQSPAALTRPMLAVRDAEEIRFIFDCRFNDGSSSLANTAWPRQLRVLEFHEF--FNQAIEGVEFPPSLEK 924
            S CL      L +T D   + W TS KELQ+ASL  C ACR   T  L V    P  LL+AAD    A    P  L          +RVPRLRAR  TW + + + +   + A  D + + F     F+    SL    WPR+L+ +EF +    N+ ++GV +P SL K
Sbjct:  134 SSCLKTLTVALNETCD--GKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAAD----APSPHPKRLCG--------TRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEF--GQAFH---GSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRK 284
[Close]
BLAST of mRNA_L-elsbetiae_contig11395.1218.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.150e-12
Identity = 72/245 (29.39%), Postives = 109/245 (44.49%), Query Frame = 1 
Query:  226 AEGTSQQYRETVKISTHSARESCIVPMGQDSRALEHVACLDRGSKDFEGSSRNQPLDPFALAIHDSR--CLSAFLAVLRDTGDDGNQHWITSIKELQMASLLFCAACRDVPTRRLGVSRRIPSHLLSAADD---------GDTAAMKIPFSLGDEGSEKKGWSRVPRLRARAVTWRLQSPAALTRPMLAVRDAEEIRFIFDCRFNDGSSSLANTAWPRQLRVLEFHEF--FNQAIEGVEFPPSLE 921
            A G + +  E V + + S  E  +      S A   V+ L++  +D   +S + PL   + A    R  CL+A +  L +T D   + W TS KELQ+ASL FC ACR+  T  L V   IP  LL+AAD           DT A     S   E ++  G               ++ P  +     A+ D + + F +D   N     L   AWPR L+ ++ H +  F + I+ +E+P SL+
Sbjct:   75 ASGAATKLAELVLVWSVSKPERAL------SIARTCVSLLEK--EDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCD--GKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSG---------------IEEPCTV----FAMTDVDHLEFGWDFEGN-----LEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQ 285
[Close]
BLAST of mRNA_L-elsbetiae_contig11395.1218.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 5.810e-12
Identity = 56/152 (36.84%), Postives = 78/152 (51.32%), Query Frame = 1 
Query:  340 CLDRGSKDFEGSSRNQPLDPFALAIHD---SRCLSAFLAVLRDTGDDGNQHWITSIKELQMASLLFCAACRDVPTRRLGVSRRIPSHLLSAADDGDTAAMKIPFSLGDEGSEKKGWSRVPRLRARAVTWRLQSPAALTRPMLAVRDAEEIRF 786
            C+    K+F  S+   P  P    +     S CL+A +  L +T +   + W TS KELQ+ASL FC ACR+  T  L V  +IP  LL+ AD    A    P  L          +RVPRLRAR VTW ++  A L+ P+ A+ D + ++F
Sbjct:   81 CVSLLEKEFAFSAPAFPAVPLLPTMPGPSRSSCLNALVIALNETCN--GESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARAD----APPPHPELLCR--------TRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKF 218
[Close]
BLAST of mRNA_L-elsbetiae_contig11395.1218.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 6.040e-11
Identity = 55/145 (37.93%), Postives = 68/145 (46.90%), Query Frame = 1 
Query:  421 SRCLSAFLAVLRDT-GDDGNQHWITSIKELQMASLLFCAACRDVPTRRLGVSRRIPSHLLSAADDGDTAAMKIPFSLGDEGSEKKGWSRVPRLRARAVTWRLQSPAALTRPMLAVRDAEEIRFIFDCRFNDGSSSLANTAWPRQL 852
            SR L   + VL    GD G +HW  S KELQ+ASL  C ACRD     L V+   P  LL+ AD         P    +EG+      RVPRLRAR V+W L S   L+  + A+  A+   F F    N   + L    WP  L
Sbjct:   27 SRFLDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADS--------PSDGSEEGT------RVPRLRAREVSWDLTSADRLSSSIYALASAQV--FTFSDSLN---AVLDAVVWPTSL 152
[Close]
BLAST of mRNA_L-elsbetiae_contig11395.1218.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.220e-9
Identity = 53/155 (34.19%), Postives = 73/155 (47.10%), Query Frame = 1 
Query:  469 DGNQHWITSIKELQMASLLFCAACRDVPTRRLGVSRRIPSHLLSAADDGDTAAMKIPFSLGDEGSEKKGWSRVPRLRARAVTWRLQSPAALTRPMLAVRDAEEIRF--IFDCRFNDGSSSLANTAWPRQLR-VLEFHEFFNQAIEGVEFPPSLEK 924
            DG + W TS KELQ+ASL FC ACR      L V  + P +LL+A D                 +++   +RVPRLRAR V W + +   L   M A++D   +RF  +F+        SL    WP  L+ ++ F   FNQ         SL+K
Sbjct:   30 DGKR-WYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVD------------APPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFN-------GSLEAVVWPPPLKQIIFFSSEFNQXXXXXXXXASLQK 164
[Close]
BLAST of mRNA_L-elsbetiae_contig11395.1218.1 vs. uniprot
Match: D7FUL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL9_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.860e-7
Identity = 46/122 (37.70%), Postives = 55/122 (45.08%), Query Frame = 1 
Query:  421 SRCLSAFLAVLRDT-GDDGNQHWITSIKELQMASLLFCAACRDVPTRRLGVSRRIPSHLLSAADDGDTAAMKIPFSLGDEGSEKKGWSRVPRLRARAVTWRLQSPAALTRPMLAVRDAEEIR 783
            SR L   + VL    GD G +HW  S KELQ+ASL  C ACRD     L V    P  L + AD           S  D+  E    +RVPRLRAR    +L       RP+ AV     +R
Sbjct:   27 SRFLDVAIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVDTSTPLRLFAPAD-----------SPSDDSEED---TRVPRLRARE---QLTFGRRFNRPLEAVSFPASLR 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11395.1218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FH81_ECTSI5.730e-2340.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRF9_9PHAE1.950e-2141.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE2.650e-1838.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE1.610e-1740.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE2.880e-1435.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI4.150e-1229.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI5.810e-1236.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0U4_9PHAE6.040e-1137.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE2.220e-934.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL9_ECTSI4.860e-737.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11395contigL-elsbetiae_contig11395:384..5322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size3390
Cds size2196
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11395.1218.1prot_L-elsbetiae_contig11395.1218.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11395 1241..4431 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815347.2220805-UTR-L-elsbetiae_contig11395:383..6471622815347.2220805-UTR-L-elsbetiae_contig11395:383..647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11395 384..647 +
1691682852.7384038-UTR-L-elsbetiae_contig11395:383..6471691682852.7384038-UTR-L-elsbetiae_contig11395:383..647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11395 384..647 +
1622815347.2334538-UTR-L-elsbetiae_contig11395:1201..12401622815347.2334538-UTR-L-elsbetiae_contig11395:1201..1240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11395 1202..1240 +
1691682852.7532387-UTR-L-elsbetiae_contig11395:1201..12401691682852.7532387-UTR-L-elsbetiae_contig11395:1201..1240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11395 1202..1240 +
1622815347.2801523-UTR-L-elsbetiae_contig11395:4431..53221622815347.2801523-UTR-L-elsbetiae_contig11395:4431..5322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11395 4432..5322 +
1691682852.7889209-UTR-L-elsbetiae_contig11395:4431..53221691682852.7889209-UTR-L-elsbetiae_contig11395:4431..5322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11395 4432..5322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815347.2480347-CDS-L-elsbetiae_contig11395:1240..13041622815347.2480347-CDS-L-elsbetiae_contig11395:1240..1304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11395 1241..1304 +
1691682852.7636507-CDS-L-elsbetiae_contig11395:1240..13041691682852.7636507-CDS-L-elsbetiae_contig11395:1240..1304Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11395 1241..1304 +
1622815347.2614393-CDS-L-elsbetiae_contig11395:1641..19471622815347.2614393-CDS-L-elsbetiae_contig11395:1641..1947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11395 1642..1947 +
1691682852.7718306-CDS-L-elsbetiae_contig11395:1641..19471691682852.7718306-CDS-L-elsbetiae_contig11395:1641..1947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11395 1642..1947 +
1622815347.2706866-CDS-L-elsbetiae_contig11395:2605..44311622815347.2706866-CDS-L-elsbetiae_contig11395:2605..4431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11395 2606..4431 +
1691682852.780222-CDS-L-elsbetiae_contig11395:2605..44311691682852.780222-CDS-L-elsbetiae_contig11395:2605..4431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11395 2606..4431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11395.1218.1

>prot_L-elsbetiae_contig11395.1218.1 ID=prot_L-elsbetiae_contig11395.1218.1|Name=mRNA_L-elsbetiae_contig11395.1218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=732bp
MGQDSRALEHVACLDRGSKDFEGSSRNQPLDPFALAIHDSRCLSAFLAVL
RDTGDDGNQHWITSIKELQMASLLFCAACRDVPTRRLGVSRRIPSHLLSA
ADDGDTAAMKIPFSLGDEGSEKKGWSRVPRLRARAVTWRLQSPAALTRPM
LAVRDAEEIRFIFDCRFNDGSSSLANTAWPRQLRVLEFHEFFNQAIEGVE
FPPSLEKCFFGNAFNQPIARAAFPESLRVAAFGNAFNQPIEGAKFPESLR
EVDFGHAFDQPVESVVWPSGLQEMVFGHSFNQPLARAAWPASLRRFVIIQ
RAPTGHHGQQRFCQPIETISWPETLEQLEFGAWFCLPTAGVVWPPSLVRL
VGANPVSVEFGTEAWVPWPASLQHLTFGNDFHESLSGATFPASLKELNLG
NNFDEPLHEVVEWPLCLEKLTLGRAFDRPLEGVVWPVRLKHLKFGENFDQ
PIVGVSWPPRLTHLTFGEWFNQPIMGVSWPPYLTHLCFGKYFDQPIDGAV
WPPALQELGLGGHVFWSRFDQPRWPASLQHLRLRGPDWYGPYFKAVWPSS
LASITIHSPYLNAIEEVRWPSYLRQLSLVGEKLYQEQFFQRRHSIQIGRF
KWPRSLRRLSFTDVHFEAIGDVRWPSHLRSLDLGDGFNQPLHKTSWPSSL
RHLLLGRGFKHPLDGLGAWMPGLVDCTFMFAPPESQYLLLLAGITWPFKL
RRLTVDSRACLSRPSIPPSVKVVYRVSRSLL*
back to top

mRNA from alignment at L-elsbetiae_contig11395:384..5322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11395.1218.1 ID=mRNA_L-elsbetiae_contig11395.1218.1|Name=mRNA_L-elsbetiae_contig11395.1218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4939bp|location=Sequence derived from alignment at L-elsbetiae_contig11395:384..5322+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCACCACAATTCATCGCCGCGGCTTCACAAAGCCTTCACCGTCTCCAT
TCGTTTATAGCTGATCTACCCACTGCCGTTGCTGGACTTTTTACGTGGTG
CGGGATCATACGCGCGTGCGTCCATCTTGCAGCGTGCGTCCATCCTGCAG
CGTACATACCCCGAGAGTGGTGTGCTACAGGACATTTTTGAACCCCATCA
CTGCTTGGTTCAGAAGCTCGTGAGAGCAGAAGGAACATCTCAACAGTACA
GAGAAACAGTGAAGGTGAACATTTTCACAAGAGAGCTGACATTGCTGGTT
CTGTACTGCTGGGCTTGTGGCGTGTACATGTATCATCGGTAGAATATCTC
GTCTGCTGAATGAACTCGTTCGTGCTGCTGTGGAATGCACCGCACCTGAT
GGAGGTTCAAATATAATTTCTGTCACGCGTTTCGCAGCCCTGCCTCTCTG
CATGATACCGCGTCTTGTCTTTACCAACTACAATGTATCTGAGGTGTTGT
GCAAGCACACACGCGCCTCTTGTGGTGAGTGCGGAAAGAGAGAAAAGAGC
TCTCCGCTCTCCGGAAGTTTCTCGGACAGTTTTTCTCAGAACATTGTGCT
AAAAACAAAACGCTTCCTTGTTTGCTTCTCGTGAACGGACAGTCCCGCCA
GGATTGTTATTTTACTCTCTTTCCCCCTCCGTTGCTCCTCTCCCAGTAAA
GACCCCTCCCTCGATGTTGAGGGGTAGATATCATTTTCGCTTCATCATTC
AAAGTGTACATTTCCCCTGCCAATAGTCTAGACTATATTCATCCGTGCCC
ACTGATGACTTTTTCCAGATTTCAACACATTCGGCACGAGAGAGCTGCAT
CGTGCCCATGGGACAAGACAGCCGTGCTCTTGAGCACGTTGCCTGCCTAG
ACAGGGGAAGCAAAGACTTCGGTGAGTAGTCATACTTTCTGGATTTCTGT
AAAATGTAGAAAATGTCAGAAAGTGGAATAACAATACACGTGCCACACAA
GACACGGCGGTACGTACATAGCCTACTACGTGTCGTTCTATGTAAATACC
TGGACAGCAGATGGCGAAACAATCCTACCGCAGCTCACTCAACAAAAAGG
AAAAGTAATGGTTGTTTCAACTTGCGATCACTGTTGTTGACCGGCTATGA
TCCCCTCTCGATGCTGCGTCATCCTTCGTCCTTACCGCGGCGATCGATCC
GCTCTGCTTGCATGTATCTAACTCTGTTTATTAAATGCCCGTCCCCCCCG
GCGGGTAGAAGGGTCGTCTCGAAACCAGCCGCTGGACCCCTTCGCCCTGG
CCATACACGACAGCAGATGCCTGAGCGCCTTCCTCGCCGTGCTTCGAGAC
ACCGGGGACGACGGAAATCAGCACTGGATAACGTCGATCAAGGAGCTGCA
GATGGCGTCGTTGCTGTTTTGCGCCGCCTGCCGGGACGTGCCGACTCGCC
GTCTTGGGGTTTCCAGACGCATCCCCTCGCACCTCTTGTCCGCGGCCGAT
GACGGTGATACCGCCGCCATGAAAATACCTTTTTCGCTCGGAGACGAGGG
CTCCGAAAAAAAAGGTTCGCTCGAAAAACAATTTGCGAGGTACATTGAAA
GGAGACATCCCACAGCTGCTGCTCAGATGGTGTGGGCAATCTCCAATTTT
CAGAGTGCCTCTTAAACGAAGCTTAACAGGGCTGTCCGCACTATTTAGCA
TATGCTTTTCTTGCCACTGCCTTACACCCATCGATAAATACTCTCGAAAA
TTAGCAAGGCAAGAATTGCGAGAAACAGAGGAGCACACGATTGCTCTTTC
GCTCGGATAGGGACTTGGAACTCTCAGCCATCTAGATAAGACGAGATGTG
TTTGTTTGTTTGTTTGATTGATTTTACTTATTCCCGGTTGTGCGTACCTG
CACGATCCACACCTTTCCAAATAAAAATGTCTCTCCCAGGCCTTTGCTCG
CTCAAGAAGTCGTGACATTGTTGTTGTTGTTGTTGTTGTTGTTTCTCACA
TTTTTAGCTCTCTAGTCCAAAACATCATTGGGGGCCCGTGGTCGTGACAT
GTGAATTGCTGTCACATATGTACTCGCCATTGGAAAGATTCGTCTCGACC
CAGGTTCGTGAAGACCGACAGCTTCGTCCAGGAAGTCTCTGAAAAGGCTT
CGAATATTGGAACATATGAAAACAAAAACGACAGCAATGACAACAAATAC
CACCGATTTACTGACCCTCCAGGTTGGTCACGCGTGCCACGGCTTCGAGC
GCGTGCCGTCACGTGGAGGCTGCAGTCTCCGGCGGCACTGACCCGTCCTA
TGCTCGCCGTTAGGGACGCAGAAGAGATCCGCTTTATCTTCGACTGCAGG
TTCAACGACGGCAGCAGCAGCTTAGCGAACACGGCGTGGCCGCGCCAACT
GAGAGTACTGGAATTCCACGAATTTTTCAATCAGGCCATTGAGGGGGTGG
AGTTTCCCCCGTCCCTCGAGAAATGCTTTTTTGGAAACGCGTTTAACCAA
CCCATCGCACGCGCTGCCTTCCCGGAGTCGCTACGAGTGGCTGCCTTCGG
GAACGCGTTCAACCAACCAATCGAAGGCGCAAAGTTTCCGGAGTCACTGC
GAGAGGTGGACTTCGGGCACGCTTTCGACCAGCCGGTGGAGAGCGTAGTG
TGGCCGTCAGGTCTCCAGGAAATGGTATTTGGGCATAGTTTCAACCAGCC
GCTGGCGCGAGCGGCGTGGCCAGCATCGCTCCGTCGCTTTGTTATCATCC
AGCGGGCTCCTACCGGCCACCATGGCCAGCAACGTTTCTGCCAGCCGATC
GAGACGATATCGTGGCCCGAAACGCTGGAGCAGCTAGAGTTCGGCGCCTG
GTTCTGCCTACCTACCGCCGGAGTAGTATGGCCGCCGTCGCTAGTGCGGC
TTGTAGGTGCAAACCCTGTGAGCGTGGAGTTCGGGACCGAAGCATGGGTC
CCGTGGCCGGCATCTCTGCAGCACCTGACGTTCGGGAATGACTTCCATGA
GTCCCTGAGTGGCGCTACCTTTCCGGCATCATTGAAGGAGCTCAACTTGG
GGAACAACTTCGACGAACCACTTCACGAGGTGGTGGAATGGCCGCTCTGC
CTGGAGAAGTTGACGCTCGGGCGTGCTTTCGACCGACCGCTAGAAGGAGT
CGTGTGGCCGGTGCGTTTGAAGCATCTCAAGTTTGGGGAGAATTTCGACC
AGCCGATCGTCGGGGTCAGCTGGCCGCCGCGCTTGACACACTTGACCTTT
GGCGAATGGTTCAACCAGCCGATTATGGGCGTCAGCTGGCCACCATATTT
GACACACTTATGCTTTGGCAAATACTTCGACCAGCCGATCGACGGAGCCG
TGTGGCCGCCGGCCCTCCAGGAGCTTGGGCTTGGGGGGCACGTGTTTTGG
AGCAGGTTTGATCAGCCAAGGTGGCCTGCATCTCTGCAGCATCTTCGTCT
GCGTGGGCCTGACTGGTACGGCCCGTATTTCAAGGCAGTGTGGCCCTCAT
CGTTGGCAAGCATTACTATCCACTCACCATATTTGAATGCCATTGAAGAG
GTCAGGTGGCCCAGCTACCTCCGGCAACTGTCGCTCGTCGGCGAAAAACT
TTATCAAGAACAATTTTTTCAACGGAGACATAGTATTCAAATTGGCCGCT
TCAAGTGGCCACGTTCACTGCGGCGGCTTTCGTTTACGGATGTCCATTTT
GAGGCGATTGGTGACGTGCGCTGGCCTTCACATCTACGAAGCCTTGACTT
GGGTGATGGCTTTAACCAGCCGCTCCACAAGACGTCGTGGCCTTCATCTC
TGCGCCACTTGCTCCTAGGGAGAGGGTTTAAGCATCCCTTGGATGGATTA
GGTGCCTGGATGCCAGGCCTCGTGGATTGTACTTTCATGTTCGCCCCTCC
GGAGAGCCAGTATCTCCTGCTCTTGGCAGGTATCACGTGGCCTTTTAAGC
TTCGACGGCTGACTGTAGACAGCCGTGCATGTTTGAGCCGGCCGTCGATC
CCCCCAAGCGTCAAAGTGGTTTACCGAGTTTCTCGTTCTCTGTTGTAAAG
AGGGGGAGATGGCCAGGTAGTCGTTCCTTGACTGAGTCTACTTGGGTGCA
AAGGTATAGATAGCTATGGAGGTGTACATATGCTGCAGAGGCGGGTGTCG
AATGCATTGCATATACTTCGAAGTGTATGTTTTTTTTGTGGGCTTTGTTT
GCCAAACTGGAATCTGTCATGGATACGGCAGGGGCTGAGCGTGCTCTATA
TGCAGGTCGAGTCGCCCGCATGTCTGGGAAGGGTGGAAGGTAGATCACAG
TTGGGGCGGATCAAGAAAATGTAGGTCCTTTCGTGCCGTCTTGAGCATCT
GTATCGAACGAACCTCAGTCATAAACGATACCTGGGGAAACTTTGCTCCA
GAGGGTTGGGCAATGGTGGCAACCTTTGGAGGTGCCTTTGGCGCTATGCC
TTAAAACGGTCAAGAACACACACGGGAGTAATTGTTTTTCGGAACATTTC
AGATTGTAGCTATTCAGATTGTTGCGGGCCTCGGGTCTATAGAAGCCGAG
ATCAAATTACTAGACCAGTTTGCGCTGACTGGTCTAATGGTTTGAATCGG
CTTCTATATTATTAGTCGTGGGGTTGAAATGACCCGACACTTTTCACTTC
CGAGGAGAGTGACTCCCCTAGTCAGCGTTGGCTGGTCTAATGGTTTGATT
TCGGCTTTTATTGATTTCGGCTTCTTACATGGGCCTCAGAGCTTGTGTGC
GTCTGAGTGGCGTCGGTTTCAAGTTATGGCACATAACTTACCACTCAGTT
CCGATGCCGGCCGCGGGCGGAGTCTTGCTCTATGCTCGGCTATGTAGCTT
GATGTTCCCCTATAGGAGGCACCCCTCGAGGTCCATCACAGTCACAAAAC
CTGCTTGCCGATACAACCGTGACAGGCCGTCCGTGGTTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11395:384..5322+

>mRNA_L-elsbetiae_contig11395.1218.1 ID=mRNA_L-elsbetiae_contig11395.1218.1|Name=mRNA_L-elsbetiae_contig11395.1218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4392bp|location=Sequence derived from alignment at L-elsbetiae_contig11395:384..5322+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGACAAGACAGCCGTGCTCTTGAGCACGTTGCCTGCCTAGACAGGGG
AAGCAAAGACTTCGATGGGACAAGACAGCCGTGCTCTTGAGCACGTTGCC
TGCCTAGACAGGGGAAGCAAAGACTTCGAAGGGTCGTCTCGAAACCAGCC
GCTGGACCCCTTCGCCCTGGCCATACACGACAGCAGATGCCTGAGCGCCT
TCCTCGCCGTGCTTCGAGACACCGGGGACGACGGAAATCAGCACTGGATA
ACGTCGATCAAGGAGCTGCAGATGGCGTCGTTGCTGTTTTGCGCCGCCTG
CCGGGACGTGCCGACTCGCCGTCTTGGGGTTTCCAGACGCATCCCCTCGC
ACCTCTTGTCCGCGGCCGATGACGGTGATACCGCCGCCATGAAAATACCT
TTTTCGCTCGGAGACGAGGGCTCCGAAAAAAAAGAAGGGTCGTCTCGAAA
CCAGCCGCTGGACCCCTTCGCCCTGGCCATACACGACAGCAGATGCCTGA
GCGCCTTCCTCGCCGTGCTTCGAGACACCGGGGACGACGGAAATCAGCAC
TGGATAACGTCGATCAAGGAGCTGCAGATGGCGTCGTTGCTGTTTTGCGC
CGCCTGCCGGGACGTGCCGACTCGCCGTCTTGGGGTTTCCAGACGCATCC
CCTCGCACCTCTTGTCCGCGGCCGATGACGGTGATACCGCCGCCATGAAA
ATACCTTTTTCGCTCGGAGACGAGGGCTCCGAAAAAAAAGGTTGGTCACG
CGTGCCACGGCTTCGAGCGCGTGCCGTCACGTGGAGGCTGCAGTCTCCGG
CGGCACTGACCCGTCCTATGCTCGCCGTTAGGGACGCAGAAGAGATCCGC
TTTATCTTCGACTGCAGGTTCAACGACGGCAGCAGCAGCTTAGCGAACAC
GGCGTGGCCGCGCCAACTGAGAGTACTGGAATTCCACGAATTTTTCAATC
AGGCCATTGAGGGGGTGGAGTTTCCCCCGTCCCTCGAGAAATGCTTTTTT
GGAAACGCGTTTAACCAACCCATCGCACGCGCTGCCTTCCCGGAGTCGCT
ACGAGTGGCTGCCTTCGGGAACGCGTTCAACCAACCAATCGAAGGCGCAA
AGTTTCCGGAGTCACTGCGAGAGGTGGACTTCGGGCACGCTTTCGACCAG
CCGGTGGAGAGCGTAGTGTGGCCGTCAGGTCTCCAGGAAATGGTATTTGG
GCATAGTTTCAACCAGCCGCTGGCGCGAGCGGCGTGGCCAGCATCGCTCC
GTCGCTTTGTTATCATCCAGCGGGCTCCTACCGGCCACCATGGCCAGCAA
CGTTTCTGCCAGCCGATCGAGACGATATCGTGGCCCGAAACGCTGGAGCA
GCTAGAGTTCGGCGCCTGGTTCTGCCTACCTACCGCCGGAGTAGTATGGC
CGCCGTCGCTAGTGCGGCTTGTAGGTGCAAACCCTGTGAGCGTGGAGTTC
GGGACCGAAGCATGGGTCCCGTGGCCGGCATCTCTGCAGCACCTGACGTT
CGGGAATGACTTCCATGAGTCCCTGAGTGGCGCTACCTTTCCGGCATCAT
TGAAGGAGCTCAACTTGGGGAACAACTTCGACGAACCACTTCACGAGGTG
GTGGAATGGCCGCTCTGCCTGGAGAAGTTGACGCTCGGGCGTGCTTTCGA
CCGACCGCTAGAAGGAGTCGTGTGGCCGGTGCGTTTGAAGCATCTCAAGT
TTGGGGAGAATTTCGACCAGCCGATCGTCGGGGTCAGCTGGCCGCCGCGC
TTGACACACTTGACCTTTGGCGAATGGTTCAACCAGCCGATTATGGGCGT
CAGCTGGCCACCATATTTGACACACTTATGCTTTGGCAAATACTTCGACC
AGCCGATCGACGGAGCCGTGTGGCCGCCGGCCCTCCAGGAGCTTGGGCTT
GGGGGGCACGTGTTTTGGAGCAGGTTTGATCAGCCAAGGTGGCCTGCATC
TCTGCAGCATCTTCGTCTGCGTGGGCCTGACTGGTACGGCCCGTATTTCA
AGGCAGTGTGGCCCTCATCGTTGGCAAGCATTACTATCCACTCACCATAT
TTGAATGCCATTGAAGAGGTCAGGTGGCCCAGCTACCTCCGGCAACTGTC
GCTCGTCGGCGAAAAACTTTATCAAGAACAATTTTTTCAACGGAGACATA
GTATTCAAATTGGCCGCTTCAAGTGGCCACGTTCACTGCGGCGGCTTTCG
TTTACGGATGTCCATTTTGAGGCGATTGGTGACGTGCGCTGGCCTTCACA
TCTACGAAGCCTTGACTTGGGTGATGGCTTTAACCAGCCGCTCCACAAGA
CGTCGTGGCCTTCATCTCTGCGCCACTTGCTCCTAGGGAGAGGGTTTAAG
CATCCCTTGGATGGATTAGGTGCCTGGATGCCAGGCCTCGTGGATTGTAC
TTTCATGTTCGCCCCTCCGGAGAGCCAGTATCTCCTGCTCTTGGCAGGTA
TCACGTGGCCTTTTAAGCTTCGACGGCTGACTGTAGACAGCCGTGCATGT
TTGAGCCGGCCGTCGATCCCCCCAAGCGTCAAAGTGGTTTACCGAGTTTC
TCGTTCTCTGTTGTAAGTTGGTCACGCGTGCCACGGCTTCGAGCGCGTGC
CGTCACGTGGAGGCTGCAGTCTCCGGCGGCACTGACCCGTCCTATGCTCG
CCGTTAGGGACGCAGAAGAGATCCGCTTTATCTTCGACTGCAGGTTCAAC
GACGGCAGCAGCAGCTTAGCGAACACGGCGTGGCCGCGCCAACTGAGAGT
ACTGGAATTCCACGAATTTTTCAATCAGGCCATTGAGGGGGTGGAGTTTC
CCCCGTCCCTCGAGAAATGCTTTTTTGGAAACGCGTTTAACCAACCCATC
GCACGCGCTGCCTTCCCGGAGTCGCTACGAGTGGCTGCCTTCGGGAACGC
GTTCAACCAACCAATCGAAGGCGCAAAGTTTCCGGAGTCACTGCGAGAGG
TGGACTTCGGGCACGCTTTCGACCAGCCGGTGGAGAGCGTAGTGTGGCCG
TCAGGTCTCCAGGAAATGGTATTTGGGCATAGTTTCAACCAGCCGCTGGC
GCGAGCGGCGTGGCCAGCATCGCTCCGTCGCTTTGTTATCATCCAGCGGG
CTCCTACCGGCCACCATGGCCAGCAACGTTTCTGCCAGCCGATCGAGACG
ATATCGTGGCCCGAAACGCTGGAGCAGCTAGAGTTCGGCGCCTGGTTCTG
CCTACCTACCGCCGGAGTAGTATGGCCGCCGTCGCTAGTGCGGCTTGTAG
GTGCAAACCCTGTGAGCGTGGAGTTCGGGACCGAAGCATGGGTCCCGTGG
CCGGCATCTCTGCAGCACCTGACGTTCGGGAATGACTTCCATGAGTCCCT
GAGTGGCGCTACCTTTCCGGCATCATTGAAGGAGCTCAACTTGGGGAACA
ACTTCGACGAACCACTTCACGAGGTGGTGGAATGGCCGCTCTGCCTGGAG
AAGTTGACGCTCGGGCGTGCTTTCGACCGACCGCTAGAAGGAGTCGTGTG
GCCGGTGCGTTTGAAGCATCTCAAGTTTGGGGAGAATTTCGACCAGCCGA
TCGTCGGGGTCAGCTGGCCGCCGCGCTTGACACACTTGACCTTTGGCGAA
TGGTTCAACCAGCCGATTATGGGCGTCAGCTGGCCACCATATTTGACACA
CTTATGCTTTGGCAAATACTTCGACCAGCCGATCGACGGAGCCGTGTGGC
CGCCGGCCCTCCAGGAGCTTGGGCTTGGGGGGCACGTGTTTTGGAGCAGG
TTTGATCAGCCAAGGTGGCCTGCATCTCTGCAGCATCTTCGTCTGCGTGG
GCCTGACTGGTACGGCCCGTATTTCAAGGCAGTGTGGCCCTCATCGTTGG
CAAGCATTACTATCCACTCACCATATTTGAATGCCATTGAAGAGGTCAGG
TGGCCCAGCTACCTCCGGCAACTGTCGCTCGTCGGCGAAAAACTTTATCA
AGAACAATTTTTTCAACGGAGACATAGTATTCAAATTGGCCGCTTCAAGT
GGCCACGTTCACTGCGGCGGCTTTCGTTTACGGATGTCCATTTTGAGGCG
ATTGGTGACGTGCGCTGGCCTTCACATCTACGAAGCCTTGACTTGGGTGA
TGGCTTTAACCAGCCGCTCCACAAGACGTCGTGGCCTTCATCTCTGCGCC
ACTTGCTCCTAGGGAGAGGGTTTAAGCATCCCTTGGATGGATTAGGTGCC
TGGATGCCAGGCCTCGTGGATTGTACTTTCATGTTCGCCCCTCCGGAGAG
CCAGTATCTCCTGCTCTTGGCAGGTATCACGTGGCCTTTTAAGCTTCGAC
GGCTGACTGTAGACAGCCGTGCATGTTTGAGCCGGCCGTCGATCCCCCCA
AGCGTCAAAGTGGTTTACCGAGTTTCTCGTTCTCTGTTGTAA
back to top