mRNA_L-elsbetiae_contig11390.1216.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig11390.1216.1 vs. uniprot
Match: A0A6H5L155_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L155_9PHAE) HSP 1 Score: 405 bits (1041), Expect = 2.140e-135 Identity = 230/285 (80.70%), Postives = 244/285 (85.61%), Query Frame = 1
Query: 1 TRHRYVWAMLMASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGVLPAASPAYDTVNQIFVPLAVPLLLFDADLQKVLRFAGTLLACFAIGAAGTVIGTAVAGAVVPLGLGSDGWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFWITKPEKQE-SLPA---GAXXXXXXXXXEPPADTSAE---VALTXXXXSPPPLAVTKEAISYALTAACALCLCGELLSNVVFGGRISAIPLVTLVTVAGATVAPSVVGRLGNVGAQVG 834
T YVWA+LMASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVG++PAASPAYDTVNQ+FVPLAVPLLLFDADLQKVLRFAGTLLACF IGAAGTVIGTA A AVVPLGLG DGWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFW+TKP++QE S PA G+ E + + A XXXX PLAVTKE ISYALTAACALCLCGELLS V FGGR+SAIPL+TLVTVAGAT APS VGRLG+VGAQ+G
Sbjct: 216 TNRWYVWAVLMASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGIIPAASPAYDTVNQVFVPLAVPLLLFDADLQKVLRFAGTLLACFVIGAAGTVIGTAAAAAVVPLGLGGDGWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFWVTKPDRQEQSAPATREGSTKAIGSAQEEAAPTATPQPLSAATXXXXXXXXPLAVTKETISYALTAACALCLCGELLSKVAFGGRVSAIPLLTLVTVAGATAAPSWVGRLGSVGAQLG 500
BLAST of mRNA_L-elsbetiae_contig11390.1216.1 vs. uniprot
Match: D8LIU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU9_ECTSI) HSP 1 Score: 379 bits (972), Expect = 5.540e-126 Identity = 217/302 (71.85%), Postives = 228/302 (75.50%), Query Frame = 1
Query: 1 TRHRYVWAMLMASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGVLPAASPAYDTVNQIFVPLAVPLLLFDADLQKVLRFAGTLLACFAIGAAGTVIGTAVAGAVVPLGLGSDGWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFWITKPEKQESLPAGAXXXXXXXXXEPPADTSAEVALTXXXXSPPPLAVTKEAIS------------------------YALTAACALCLCGELLSNVVFGGRISAIPLVTLVTVAGATVAPSVVGRLGNVGAQVG 834
T YVWA+L+ASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGV+PAASPAYDTVNQ+FVPLAVPLLLFDADLQKVLRFAGTLLACF IGAAGTVIGTA A AVVPLGLG DGWKIASALAARHIGGAVNYVAVCETLGVSADA+VAGLAADNMVVSLYFIFLFWITKP++QE EP T+ T S YALTAACALCLCGELLS V FGGR+SAIPLVTLVTVAGAT APS VGRLG+VGAQ+G
Sbjct: 157 TNRWYVWAVLIASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGVIPAASPAYDTVNQVFVPLAVPLLLFDADLQKVLRFAGTLLACFVIGAAGTVIGTAAAAAVVPLGLGGDGWKIASALAARHIGGAVNYVAVCETLGVSADAIVAGLAADNMVVSLYFIFLFWITKPDRQE---------------EPTPATTTRQGSTKAIGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYALTAACALCLCGELLSKVAFGGRVSAIPLVTLVTVAGATAAPSWVGRLGSVGAQLG 443
BLAST of mRNA_L-elsbetiae_contig11390.1216.1 vs. uniprot
Match: A0A835YW30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW30_9STRA) HSP 1 Score: 277 bits (708), Expect = 2.080e-88 Identity = 152/274 (55.47%), Postives = 194/274 (70.80%), Query Frame = 1
Query: 13 YVWAMLMASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGVLPAASPAYDTVNQIFVPLAVPLLLFDADLQKVLRFAGTLLACFAIGAAGTVIGTAVAGAVVPLGLGSDGWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFWITKPEKQESLPAGAXXXXXXXXXEPPADTSAEVALTXXXXSPPPLAVTKEAISYALTAACALCLCGELLSNVVFGGRISAIPLVTLVTVAGATVAPSVVGRLGNVGAQVG 834
Y+W LM +SS GLWSE T+WGAA+SSPLVTML+TIT CN+GVLP ASP Y VN+ VPLAVPLLL+DADL++V++++GTL+ACF +GA GTV+GT VA +VPLG+G+DGWKIA+ALA+RHIGGAVNYVAV ETL +SA+AVVAGLAADN+VV+LYF FLF++ K + + G E P+ E + P V K+ ++YAL A CAL G ++ G IS IP+ +L+TVA A+ P V+ LG GAQVG
Sbjct: 7 YLWTFLMWASSFGLWSENTKWGAALSSPLVTMLITITACNIGVLPTASPVYTCVNKYLVPLAVPLLLYDADLKRVMKYSGTLMACFMLGAVGTVLGTVVAAKLVPLGMGADGWKIAAALASRHIGGAVNYVAVAETLSMSAEAVVAGLAADNLVVALYFAFLFYMAKGDAGTAAGGG-------DAPETPSGGGGEGDMGPPTVDPASPLVGKDGLAYALAAGCALTFAGNAIAAGPLRGAISGIPITSLLTVAAASAFPKVLAPLGVAGAQVG 273
BLAST of mRNA_L-elsbetiae_contig11390.1216.1 vs. uniprot
Match: A0A7S3XZE0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZE0_HETAK) HSP 1 Score: 219 bits (557), Expect = 8.830e-65 Identity = 125/274 (45.62%), Postives = 175/274 (63.87%), Query Frame = 1
Query: 13 YVWAMLMASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGVLPAASPAYDTVNQIFVPLAVPLLLFDADLQKVLRFAGTLLACFAIGAAGTVIGTAVAGAVVPLGLGSDGWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFWITKPEKQESLPAGAXXXXXXXXXEPPADTSAEVALTXXXXSPPPLAVTKEAISYALTAACALCLCGELLSNVVFGGRISAIPLVTLVTVAGATVAPSVVGRLGNVGAQVG 834
Y+W LM S++ GLWSERT+ GA +SSPLVTM +TI +CN+G+LP+ + AYD +N+ VPLAVPLLLFDA+++ VLR G+++A F +GA GT++GT V +VPLGLG D WK+ +AL ARHIGGAVNYVAV ET+ + DA+ AGLAADN+V++LYF F+FW+ + A AD S +VA L +++S+ C LCL + + G +S IP+V++ TVA A++AP + L G ++G
Sbjct: 98 YIWTALMGSATFGLWSERTKLGATLSSPLVTMAVTILMCNLGLLPSHNAAYDVINKTLVPLAVPLLLFDANIKMVLRSTGSMMAAFLLGALGTIVGTLVGARLVPLGLGEDSWKVVAALCARHIGGAVNYVAVSETVAMGPDALTAGLAADNLVIALYFSFIFWLANKAPDDGDGAAQVSNSQGGGG---ADDSPQVAGNQFN-----LLNVMKSVSFG----CTLCLISSITKAFFYPG-LSIIPIVSVATVAAASIAPGLFRPLTLSGGKIG 358
BLAST of mRNA_L-elsbetiae_contig11390.1216.1 vs. uniprot
Match: A0A7S4D9J7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9J7_HETAK) HSP 1 Score: 209 bits (533), Expect = 6.440e-63 Identity = 99/165 (60.00%), Postives = 132/165 (80.00%), Query Frame = 1
Query: 13 YVWAMLMASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGVLPAASPAYDTVNQIFVPLAVPLLLFDADLQKVLRFAGTLLACFAIGAAGTVIGTAVAGAVVPLGLGSDGWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFWI 507
Y+W LM S++ GLWSERT+ GA +SSPLVTM +TI +CN+G+LP+ + AYD +N+ VPLAVPLLLFDA+++ VLR G+++A F +GA GT++GT V +VPLGLG D WK+ +AL ARHIGGAVNYVAV ET+ + DA+ AGLAADN+V++LYF F+FW+
Sbjct: 98 YIWTALMGSATFGLWSERTKLGATLSSPLVTMAVTILMCNLGLLPSHNAAYDVINKTLVPLAVPLLLFDANIKMVLRSTGSMMAAFLLGALGTIVGTLVGARLVPLGLGEDSWKVVAALCARHIGGAVNYVAVSETVAMGPDALTAGLAADNLVIALYFSFIFWL 262
BLAST of mRNA_L-elsbetiae_contig11390.1216.1 vs. uniprot
Match: W7TV24_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TV24_9STRA) HSP 1 Score: 205 bits (521), Expect = 3.040e-59 Identity = 127/267 (47.57%), Postives = 172/267 (64.42%), Query Frame = 1
Query: 13 YVWAMLMASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGVLPAASPAYDTVNQIFVPLAVPLLLFDADLQKVLRFAGTLLACFAIGAAGTVIGTAVAGAVVPLG----LGSDGWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFWITK---PEKQESLPAGAXXXXXXXXXEPPADTSAEVALTXXXXSPPPLAVTKEAISYALTAACALCLCGELLSNVVFGGRISAIPLVTLVTVAGATVAP 792
+VW+ML+ +S+ G+ +ERT+ GAA+SSPL+TM + + CN+G LP+A+PAY +VN+ VPLA+PLLL DA+L KVL G LL F +G+ GTV+GT +A VPLG G +GW IA+ALA+RHIGGAVN+VAV ETLG+SA+ AG+AADN+VVS YF LFW+ + PE + G EP E A T PP L K AL+ A LC+ G +S + G IS+IP+++L++VA AT+ P
Sbjct: 104 WVWSMLLLASTTGVAAERTKIGAALSSPLITMAVALVACNLGFLPSAAPAYTSVNKFLVPLAIPLLLLDANLFKVLTQTGRLLRSFVLGSIGTVLGTLIAAWFVPLGSLGAAGKEGWMIAAALASRHIGGAVNFVAVSETLGMSAELTAAGIAADNLVVSFYFGLLFWLARDLEPEDEVLHANGGGGGGPKGTREP-----VEQA-TWSATEPPSLGYLK-----ALSLASLLCMVGTWVSEGLLQGAISSIPVISLLSVATATLFP 359
BLAST of mRNA_L-elsbetiae_contig11390.1216.1 vs. uniprot
Match: B8C2C6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2C6_THAPS) HSP 1 Score: 181 bits (459), Expect = 5.960e-51 Identity = 117/279 (41.94%), Postives = 169/279 (60.57%), Query Frame = 1
Query: 7 HRYVWAMLMASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGVLPAASPAYDTVNQIFVPLAVPLLLFDADLQKVLRFAGTLLACFAIGAAGTVIGTAVAGAVVPL-GLGSDGWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFWITKPEKQESLPAGAXXXXXXXXXEPPADTSAEVALTXXXXSPP--PLAVTKEAISYALTAACALCLCGELLSNVVFGGRISAIPLVTLVTVAGATVAPSVVGRLGNVGAQVG 834
H Y W + ++T +G A+S+PLVTML+++ L NVGV+P SPAY +N+I VPLAVPL LFD+D+++V+R AG+LL F +GA TV+GT A A+VPL LG GWK+ASAL ARHIGGA+N+VAV +TL + V A +AADN+VV+LYF FLF++ ++ G + T ++ AL+ P PL +T +I+Y+L A L G L++ + +S++ + +L+TVA AT PS L + G +G
Sbjct: 23 HHYTWCGIAME-------QKTTFGKALSAPLVTMLISLCLANVGVMPFTSPAYGLINRILVPLAVPLFLFDSDIKRVVRDAGSLLMAFLVGAVSTVVGTLGALALVPLKSLGDQGWKVASALTARHIGGAINFVAVADTLSLDGGIVSAAIAADNVVVALYFAFLFYLA------TVGEGTRDNLNNESKANVSSTISDNALSEEIVIPDEKPLPITTSSIAYSLATASCLVTVGGWLTSAICP-TLSSMVITSLLTVASATAFPSWFQSLRSSGTAIG 287
BLAST of mRNA_L-elsbetiae_contig11390.1216.1 vs. uniprot
Match: A0A1Y1IFH7_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFH7_KLENI) HSP 1 Score: 181 bits (460), Expect = 2.970e-50 Identity = 124/274 (45.26%), Postives = 160/274 (58.39%), Query Frame = 1
Query: 16 VWAMLMASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGVLPAASPAYDTVNQIFVPLAVPLLLFDADLQKVLRFAGTLLACFAIGAAGTVIGTAVAGAVVPL-GLGSDGWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFWITKPEKQESLPAGAXXXXXXXXXEPPADTSAEVALTXXXXSPPPLAVTKEAISYALTAACALCLCGELLSNV----VFGGRISAIPLVTLVTVAGATVAPSVVGRLGNVG 822
VWA L+A+ +AGLWSE+T G A+S PLV+ L+ + L N+GVLPAA+PAY VN+ +PLAVPLLLF AD+++V G L F +GAA TV G+ A ++ PL LG DGWK+A+AL +RHIGGAVNYVAV E L S+ V AGLAADN++ +LYF +F +L AG +P A TS+ + T S AL + A+C G LS + V GG I P +T V VA AT+ P VG L G
Sbjct: 122 VWAFLLAAGAAGLWSEKTTLGQALSGPLVSTLIGLALSNLGVLPAAAPAYAVVNKFLLPLAVPLLLFSADIKRVFSETGRLWLAFLLGAAATVAGSFAALSLFPLRSLGEDGWKMAAALMSRHIGGAVNYVAVSEALQTSSSMVAAGLAADNLICALYFTLVF---------ALAAGIPPD------QPSAATSSPITSAALPPEEGKSTFTVLEGSTALALSAAICAVGSRLSKLPALRVLGGGI---PCMTAVVVALATLLPKQVGALAPAG 377
BLAST of mRNA_L-elsbetiae_contig11390.1216.1 vs. uniprot
Match: A0A1E7EVM0_9STRA (DUF819-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVM0_9STRA) HSP 1 Score: 177 bits (450), Expect = 6.300e-50 Identity = 108/260 (41.54%), Postives = 154/260 (59.23%), Query Frame = 1
Query: 61 ERTRWGAAVSSPLVTMLLTITLCNVGVLPAASPAYDTVNQIFVPLAVPLLLFDADLQKVLRFAGTLLACFAIGAAGTVIGTAVAGAVVPL-GLGSD-GWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFWITKPEKQESLPAGAXXXXXXXXXEPPADTSAEVALTXXXXSPPPLAVTKEAISYALTAACALCLCGELLSNVVFGGRISAIPLVTLVTVAGATVAPSVVGRLGNVGAQVG 834
RT G A+S+PL TM + + N+G++P SP Y VN+ FVPLA+PLLLFD+DL++V++ GTLL F +GA TV T + ++PL LG D GW++A ALAARHIGGA+N+VAV ETL + DAV A +AADN+VV+LYF FLF I K + + E T +EVA+ P ++T ++ +L+ A +L G L+ V+ +S++PL++ +TV AT P L G +G
Sbjct: 17 RRTMIGKALSAPLATMAIALIFANIGIIPFQSPIYTIVNRFFVPLAIPLLLFDSDLKRVIKDTGTLLTAFGVGAFATVFATIITFPIIPLKSLGGDVGWRVACALAARHIGGAINFVAVAETLNIGGDAVAAAIAADNVVVALYFAFLFSIAKADNPKD----------DDDDEAQQFTISEVAVEDGK----PSSITLPTLAISLSVASSLVTAGTFLTKVLLPAGVSSLPLISTLTVIAATAFPKFFSSLSETGTALG 262
BLAST of mRNA_L-elsbetiae_contig11390.1216.1 vs. uniprot
Match: A0A7S3PV23_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV23_9STRA) HSP 1 Score: 178 bits (451), Expect = 8.300e-50 Identity = 113/276 (40.94%), Postives = 164/276 (59.42%), Query Frame = 1
Query: 13 YVWAMLMASSSAGLWSER-TRWGAAVSSPLVTMLLTITLCNVGVLPAASPAYDTVNQIFVPLAVPLLLFDADLQKVLRFAGTLLACFAIGAAGTVIGTAVAGAVVPL-GLGSDGWKIASALAARHIGGAVNYVAVCETLGVSADAVVAGLAADNMVVSLYFIFLFWITKPEKQESLPAGAXXXXXXXXXEPPADTSAEVALTXXXXSPPPLAVTKEAISYALTAACALCLCGELLSNVVFGGRISAIPLVTLVTVAGATVAPSVVGRLGNVGAQVG 834
YV ++M S+ G+ ER T +G A+S+PLVTM + + NVGV+P SP Y +N V LAVPLLLFD++L+ ++ GTLL CF +GA T+IGT + ++PL LG +GWKIASALAARHIGGA+N+VAV ETLG++ AV A +AADN+VV+LYF LF++ P E EP + + S + +T ++S ++ AA L G++ + +S++PL+++ TV GAT+ P+ L G +G
Sbjct: 14 YVLTVIMILSTVGINLERKTAFGKALSAPLVTMGMALITANVGVVPFKSPIYTFINANLVALAVPLLLFDSNLRTLVNDTGTLLLCFIVGAISTIIGTVLTFPLLPLRSLGGNGWKIASALAARHIGGAINFVAVSETLGITGSAVSAAIAADNVVVALYFAILFYLAVPGDGEE---------DAKLDEPKEQVQLKTPIDPEDISVDGVGITLPSLSTSMAAASCLVALGKIATAAFCRTGMSSLPLISMFTVIGATIFPTFFSTLTITGTTIG 280 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11390.1216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11390.1216.1 >prot_L-elsbetiae_contig11390.1216.1 ID=prot_L-elsbetiae_contig11390.1216.1|Name=mRNA_L-elsbetiae_contig11390.1216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=270bp MLMASSSAGLWSERTRWGAAVSSPLVTMLLTITLCNVGVLPAASPAYDTVback to top mRNA from alignment at L-elsbetiae_contig11390:287..5361- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig11390.1216.1 ID=mRNA_L-elsbetiae_contig11390.1216.1|Name=mRNA_L-elsbetiae_contig11390.1216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5075bp|location=Sequence derived from alignment at L-elsbetiae_contig11390:287..5361- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig11390:287..5361- >mRNA_L-elsbetiae_contig11390.1216.1 ID=mRNA_L-elsbetiae_contig11390.1216.1|Name=mRNA_L-elsbetiae_contig11390.1216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1620bp|location=Sequence derived from alignment at L-elsbetiae_contig11390:287..5361- (Laminarionema elsbetiae ELsaHSoW15)back to top |