mRNA_L-elsbetiae_contig11387.1214.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11387.1214.1
Unique NamemRNA_L-elsbetiae_contig11387.1214.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11387.1214.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.370e-9
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 2 
Query:  197 EEKLRAMRSGCTIDVVRYKGIFVGVEGGGAKGRE 298
            EEKLRAMRSGCTID VRYKG+FV VEGGG KGRE
Sbjct:  276 EEKLRAMRSGCTIDGVRYKGMFVRVEGGGGKGRE 309
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BLAST of mRNA_L-elsbetiae_contig11387.1214.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.500e-5
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 2 
Query:  215 MRSGCTIDVVRYKGIFVGVEGGGAKGRE 298
            MRSGCTID VRYKG+FV VEGGG KGRE
Sbjct:    1 MRSGCTIDGVRYKGMFVRVEGGGGKGRE 28
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11387.1214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDE8_ECTSI4.370e-988.24RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J790_9PHAE1.500e-585.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11387contigL-elsbetiae_contig11387:1796..2093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size299
Cds size105
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815346.7562606-UTR-L-elsbetiae_contig11387:1795..19881622815346.7562606-UTR-L-elsbetiae_contig11387:1795..1988Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11387 1796..1988 +
1691682852.4374332-UTR-L-elsbetiae_contig11387:1795..19881691682852.4374332-UTR-L-elsbetiae_contig11387:1795..1988Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11387 1796..1988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815346.7665262-CDS-L-elsbetiae_contig11387:1988..20931622815346.7665262-CDS-L-elsbetiae_contig11387:1988..2093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11387 1989..2093 +
1691682852.4529097-CDS-L-elsbetiae_contig11387:1988..20931691682852.4529097-CDS-L-elsbetiae_contig11387:1988..2093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11387 1989..2093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11387.1214.1prot_L-elsbetiae_contig11387.1214.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11387 1989..2093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11387.1214.1

>prot_L-elsbetiae_contig11387.1214.1 ID=prot_L-elsbetiae_contig11387.1214.1|Name=mRNA_L-elsbetiae_contig11387.1214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=35bp
MEEKLRAMRSGCTIDVVRYKGIFVGVEGGGAKGRE
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mRNA from alignment at L-elsbetiae_contig11387:1796..2093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11387.1214.1 ID=mRNA_L-elsbetiae_contig11387.1214.1|Name=mRNA_L-elsbetiae_contig11387.1214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=298bp|location=Sequence derived from alignment at L-elsbetiae_contig11387:1796..2093+ (Laminarionema elsbetiae ELsaHSoW15)
ATCAGCACTTGGGAATATAGATGGCACTGCTAGCTTCTTTTTAGATCCGG
GTCCGAGTGCTGAGTTGTGCCCGAAGAGGCTACAAAGTTCGTCACAGCTG
CTGTGATGACAGCAGTAGGCCTGGTGGGCCGTTTTGTTTGGTCACGGTTT
ATTTTTTTATGGTGGATCGTTTCTGCTTCACCGCGCAGGTAAAATGGAAG
AGAAGCTGAGGGCTATGCGGAGCGGCTGCACCATCGACGTAGTCCGGTAC
AAGGGCATATTCGTGGGAGTCGAGGGGGGCGGCGCCAAGGGGAGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11387:1796..2093+

>mRNA_L-elsbetiae_contig11387.1214.1 ID=mRNA_L-elsbetiae_contig11387.1214.1|Name=mRNA_L-elsbetiae_contig11387.1214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=210bp|location=Sequence derived from alignment at L-elsbetiae_contig11387:1796..2093+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGAGAAGCTGAGGGCTATGCGGAGCGGCTGCACCATCGACGTAGT
CCGGTACAAGGGCATATTCGTGGGAGTCGAGGGGGGCGGCGCCAAGGGGA
GGGAGATGGAAGAGAAGCTGAGGGCTATGCGGAGCGGCTGCACCATCGAC
GTAGTCCGGTACAAGGGCATATTCGTGGGAGTCGAGGGGGGCGGCGCCAA
GGGGAGGGAG
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