mRNA_L-elsbetiae_contig11377.1210.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11377.1210.1
Unique NamemRNA_L-elsbetiae_contig11377.1210.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11377.1210.1 vs. uniprot
Match: D7FQX1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX1_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 4.160e-19
Identity = 64/136 (47.06%), Postives = 68/136 (50.00%), Query Frame = 1 
Query:    1 VFGASDEAAGRAGAGSASIIGSVQATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDECVICLTEPKSTLLLPCRHLCVCQECFRHVDKCPVCRSPFDNYIVLSGP 408
            VFGASDEA G A  G AS IGS+QATA                                                           +ECVICLT+PK+TLLLPCRHLCVC ECFRHVDKCPVCRS FDNYIVLS P
Sbjct:  646 VFGASDEAGGAARPGLASNIGSIQATASRGAGAGGLGAGEEVP-------------------------------------------EECVICLTDPKNTLLLPCRHLCVCTECFRHVDKCPVCRSAFDNYIVLSAP 738
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BLAST of mRNA_L-elsbetiae_contig11377.1210.1 vs. uniprot
Match: A0A6H5K7X0_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X0_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 7.580e-19
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:  259 DECVICLTEPKSTLLLPCRHLCVCQECFRHVDKCPVCRSPFDNYIVLSGP 408
            +ECVICLT+PK+TLLLPCRHLCVC ECFRHVDKCPVCRS FDNYIVLS P
Sbjct:  687 EECVICLTDPKNTLLLPCRHLCVCTECFRHVDKCPVCRSAFDNYIVLSAP 736
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BLAST of mRNA_L-elsbetiae_contig11377.1210.1 vs. uniprot
Match: A0A7S2AX55_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AX55_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.270e-16
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:  259 DECVICLTEPKSTLLLPCRHLCVCQECFRHVDKCPVCRSPFDNYIVLS 402
            +EC ICLTEPK T LLPCRHLCVC  CF+ +DKCPVCR+PF+ YIV +
Sbjct:   69 EECTICLTEPKDTTLLPCRHLCVCSTCFKQIDKCPVCRAPFETYIVFN 116
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BLAST of mRNA_L-elsbetiae_contig11377.1210.1 vs. uniprot
Match: A0A835Z5X0_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5X0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.590e-16
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:  262 ECVICLTEPKSTLLLPCRHLCVCQECFRHVDKCPVCRSPFDNYIVLSGPP 411
            +CVICLTE K+ +LLPCRHLCVC+ CFRH+DKCPVCRS FDNY+ +   P
Sbjct:   17 DCVICLTEEKAFMLLPCRHLCVCKACFRHIDKCPVCRSAFDNYLQVDPAP 66
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BLAST of mRNA_L-elsbetiae_contig11377.1210.1 vs. uniprot
Match: A0A7S2SVW1_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVW1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.940e-16
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:  262 ECVICLTEPKSTLLLPCRHLCVCQECFRHVDKCPVCRSPFDNYIVLSGPP 411
            +CV+CLTE K T+LLPCRHLCVC+ CFR +DKCPVCR+PF+ Y+V +  P
Sbjct:    5 KCVVCLTEAKDTILLPCRHLCVCRHCFRQIDKCPVCRTPFETYMVFTDKP 54
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BLAST of mRNA_L-elsbetiae_contig11377.1210.1 vs. uniprot
Match: A0A7S1CHK6_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHK6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.530e-15
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:  262 ECVICLTEPKSTLLLPCRHLCVCQECFRHVDKCPVCRSPFDNYIVLSGP 408
            +C++C+TE KS +LLPCRHLCVCQECF H+DKCPVCR+ +D Y+V   P
Sbjct:  116 DCLVCMTEKKSVVLLPCRHLCVCQECFTHIDKCPVCRTVYDGYMVFQWP 164
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BLAST of mRNA_L-elsbetiae_contig11377.1210.1 vs. uniprot
Match: A0A7S2XYA7_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYA7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.140e-15
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:  259 DECVICLTEPKSTLLLPCRHLCVCQECFRHVDKCPVCRSPFDNYI 393
            DEC +CLT+PK   LLPCRH+CVC+ECFRH+ +CPVCRSPF++Y+
Sbjct:  178 DECTVCLTDPKDVALLPCRHVCVCRECFRHISRCPVCRSPFEDYL 222
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BLAST of mRNA_L-elsbetiae_contig11377.1210.1 vs. uniprot
Match: A0A7S2SWX2_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SWX2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.200e-14
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:  259 DECVICLTEPKSTLLLPCRHLCVCQECFRHVDKCPVCRSPFDNYIVLSGPP 411
            +ECV+CLTE K T+LLPCRHLCVC+ CFR +DKCPVCR+PF+ Y+V +  P
Sbjct:  471 EECVVCLTEAKDTILLPCRHLCVCRHCFRQIDKCPVCRTPFETYMVFTDKP 521
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BLAST of mRNA_L-elsbetiae_contig11377.1210.1 vs. uniprot
Match: A0A7S3C5X0_9EUKA (RING-type E3 ubiquitin transferase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C5X0_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 1.770e-12
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:  262 ECVICLTEPKSTLLLPCRHLCVCQECF-RHVDKCPVCRSPFDNYIVLSGP 408
            +CVICLTEP+ T+LLPCRHLC+CQ CF R  D+CPVCR+PF +Y+  + P
Sbjct:   86 DCVICLTEPRDTILLPCRHLCLCQACFERSDDRCPVCRAPFQSYLRFTTP 135
[Close]
BLAST of mRNA_L-elsbetiae_contig11377.1210.1 vs. uniprot
Match: A0A8J5WZS5_DIALT (RING-type E3 ubiquitin transferase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5WZS5_DIALT)

HSP 1 Score: 80.9 bits (198), Expect = 4.500e-12
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:  262 ECVICLTEPKSTLLLPCRHLCVCQECFRHVDKCPVCRSPFDNYI 393
            ECVICL+EPKS LLLPCRHLC C +CF  VDKCPVCR+ FD+++
Sbjct:  700 ECVICLSEPKSVLLLPCRHLCCCHDCFTQVDKCPVCRTEFDSFV 743
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11377.1210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQX1_ECTSI4.160e-1947.06RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5K7X0_9PHAE7.580e-1988.00RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A7S2AX55_9STRA1.270e-1670.83RING-type E3 ubiquitin transferase n=1 Tax=Dictyoc... [more]
A0A835Z5X0_9STRA1.590e-1670.00RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A7S2SVW1_9STRA1.940e-1666.00RING-type E3 ubiquitin transferase n=1 Tax=Rhizoch... [more]
A0A7S1CHK6_9STRA3.530e-1565.31RING-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]
A0A7S2XYA7_9STRA5.140e-1568.89RING-type E3 ubiquitin transferase n=1 Tax=Fibroca... [more]
A0A7S2SWX2_9STRA2.200e-1466.67RING-type E3 ubiquitin transferase n=1 Tax=Rhizoch... [more]
A0A7S3C5X0_9EUKA1.770e-1264.00RING-type E3 ubiquitin transferase n=1 Tax=Haptoli... [more]
A0A8J5WZS5_DIALT4.500e-1272.73RING-type E3 ubiquitin transferase n=1 Tax=Diacron... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11377contigL-elsbetiae_contig11377:971..3057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue1.7e-20
Seed eggNOG ortholog2880.D7FQX1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG4265@1,KOG4265@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size2089
Cds size774
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815346.2420948-CDS-L-elsbetiae_contig11377:970..17441622815346.2420948-CDS-L-elsbetiae_contig11377:970..1744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11377 971..1744 +
1691682852.220258-CDS-L-elsbetiae_contig11377:970..17441691682852.220258-CDS-L-elsbetiae_contig11377:970..1744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11377 971..1744 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815346.253335-UTR-L-elsbetiae_contig11377:1744..30571622815346.253335-UTR-L-elsbetiae_contig11377:1744..3057Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11377 1745..3057 +
1691682852.2299566-UTR-L-elsbetiae_contig11377:1744..30571691682852.2299566-UTR-L-elsbetiae_contig11377:1744..3057Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11377 1745..3057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11377.1210.1prot_L-elsbetiae_contig11377.1210.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11377 971..1744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11377.1210.1

>prot_L-elsbetiae_contig11377.1210.1 ID=prot_L-elsbetiae_contig11377.1210.1|Name=mRNA_L-elsbetiae_contig11377.1210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
VFGASDEAAGRAGAGSASIIGSVQATAGGGSSSSTAGGGGSSSSTVGTGG
NNNANGGGGRHEHEHLPSAGTGGGGGGGGGAEEDDQDECVICLTEPKSTL
LLPCRHLCVCQECFRHVDKCPVCRSPFDNYIVLSGPPEPPPPQQASAAAP
SAAVLVTGGSASGAGDELAASGLGGAGAAPPARPAAGGNSSSPSRQQPGV
GGRTSRRGSGGRASGGGGGNGEEEEGETGQDSSAELSGAVPAQRNIFAVS
RRRVAEG*
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mRNA from alignment at L-elsbetiae_contig11377:971..3057+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11377.1210.1 ID=mRNA_L-elsbetiae_contig11377.1210.1|Name=mRNA_L-elsbetiae_contig11377.1210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2087bp|location=Sequence derived from alignment at L-elsbetiae_contig11377:971..3057+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTTTGGCGCCAGCGATGAAGCGGCCGGGAGGGCGGGGGCCGGGTCCGC
CTCGATAATCGGCTCCGTCCAGGCGACGGCCGGCGGCGGCAGCAGCAGCA
GCACGGCCGGCGGCGGAGGCAGCAGCAGCAGCACGGTCGGCACCGGCGGC
AACAACAACGCGAACGGCGGCGGCGGCCGCCACGAGCACGAGCACTTGCC
GTCGGCCGGGACCGGCGGCGGCGGCGGTGGCGGGGGGGGGGCGGAAGAAG
ACGACCAGGACGAGTGCGTGATCTGTCTCACCGAGCCGAAGAGCACCCTC
CTGCTGCCGTGCCGGCACCTGTGCGTGTGCCAGGAGTGCTTCCGCCACGT
GGACAAATGCCCCGTCTGCCGGTCCCCCTTCGACAACTATATCGTGCTCT
CGGGGCCGCCCGAGCCACCACCGCCGCAGCAGGCTAGCGCGGCGGCACCA
AGTGCTGCTGTTCTTGTTACCGGCGGCAGCGCCAGCGGCGCCGGCGATGA
GCTTGCCGCGTCAGGTTTAGGCGGGGCGGGCGCGGCCCCACCGGCGCGGC
CGGCTGCCGGTGGCAACAGTAGTAGTCCGTCGCGGCAGCAGCCGGGGGTG
GGAGGAAGAACAAGCAGACGCGGCAGCGGCGGCCGGGCTAGTGGTGGTGG
TGGCGGCAACGGAGAGGAAGAGGAAGGAGAAACGGGGCAGGATTCTTCGG
CCGAGTTGAGCGGGGCTGTGCCGGCGCAGAGAAATATCTTCGCGGTTTCT
CGGCGGCGAGTTGCGGAGGGGTAAATTGAGCGTGAACGCACACGCTTGCT
GTTGCGCCGGGTGGTGGTTTCTTCAGGTCCTGATAAATATCGACGTGGGT
GTGGCGTGCCCGGGGAAATGCTGGGCGGGCGTGTGGCGGCAGTAGGTGCC
CCCCCCCCGTGTCGCAACGGGTTGGATATTTGTTTTTTGTTCAGTATTTT
TTCCGCATGTGTCTTGATCCGTTTCCGCGTTGTGGTTGTTCTATAATAGG
GAAGGCCACTTTTTTTGCAGCCCCCCCCCCTCCCGGAGGGGGGCTCCGCG
GGGTAGATGGGCGTACGTACATACCCTCATACATACCTACATTTTGTAGC
TCGCGCACGCTTTTCTGCTCCGTGTTTGTTTTTCTTGTGTTGGTGGTAGT
TTCGGATTTGGTATCCCTCTTGAATACGGACATTTTTATGCGTGTGCTTG
CGATATGTAGCCATCTGCCGCTGCCGGCGTTACTGGCGTGAGGCTTGGTG
AGACGGTACACGTTGTTTACAGCGATATTTAAGAGAAAGGCATCCGGGAA
GGGAAGGGCATGTACTTTTTCTGACACTTGGGTGGCGCGTGAAACACGAG
GTTGCCGAAAGCTGGATTGGATTGGATTGGATTGTAGTATACCGTAGGTT
GACACAAGATACCACCCCCCCCTGGACAGATTTTCAAAGATCGATTACTC
CGTAACGAAGAGGGCGCCAGCACCAAACGATATATTTTCGGACAGCCCTT
CACTAAATAGATCTCTCCAACGCCACCCCATTCCGGCACTGGCACTCTTC
TTGCTGTGGAGGAATCGAGCTTTGAAAATCTGTCCGGGGGGGGGGGGGTC
GTATCTTGTGGCATCTACCGTAGCCTACCTCGCCCGTGACAAACCGCAAC
ACGGTTGCTACTCCGCACGCGTGTACTTAAATCATTCGTGTCGTTCGAAA
CGAAGAGGCATGCCTCGAAGATAACCTAAAGTGTATGTAGCTGGTTGGTA
CACCGCCGCGGCCGCGGCCCGCTTTGGCTCAAACTCGCAGAGAGAAGAAG
AGGGAGAGATGTTTTAAGAGCAAGAGCGTCCGAAGAGGTGCGCGATGCGG
TAAGTCCTCTCTCACCCGGGTGGGGGAGATCGATGGGGCACAAGACGAGC
AAAAACAACAAAACACGCTCGTCGTCGTCGTCGTCGTCGAAAAAGACGAA
GAGTATCGTCTCAGCCGCCGTCGTAATTGCTCTGTGTAAATGGGCGGCGA
CTGACTACATTTATGTGACCACGGGAATTGACCGCATCAAGTGTTGGATT
AGTACGGACATTGAGAGGTACTGGATGGAGAGATCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11377:971..3057+

>mRNA_L-elsbetiae_contig11377.1210.1 ID=mRNA_L-elsbetiae_contig11377.1210.1|Name=mRNA_L-elsbetiae_contig11377.1210.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1548bp|location=Sequence derived from alignment at L-elsbetiae_contig11377:971..3057+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTTTGGCGCCAGCGATGAAGCGGCCGGGAGGGCGGGGGCCGGGTCCGC
CTCGATAATCGGCTCCGTCCAGGCGACGGCCGGCGGCGGCAGCAGCAGCA
GCACGGCCGGCGGCGGAGGCAGCAGCAGCAGCACGGTCGGCACCGGCGGC
AACAACAACGCGAACGGCGGCGGCGGCCGCCACGAGCACGAGCACTTGCC
GTCGGCCGGGACCGGCGGCGGCGGCGGTGGCGGGGGGGGGGCGGAAGAAG
ACGACCAGGACGAGTGCGTGATCTGTCTCACCGAGCCGAAGAGCACCCTC
CTGCTGCCGTGCCGGCACCTGTGCGTGTGCCAGGAGTGCTTCCGCCACGT
GGACAAATGCCCCGTCTGCCGGTCCCCCTTCGACAACTATATCGTGCTCT
CGGGGCCGCCCGAGCCACCACCGCCGCAGCAGGCTAGCGCGGCGGCACCA
AGTGCTGCTGTTCTTGTTACCGGCGGCAGCGCCAGCGGCGCCGGCGATGA
GCTTGCCGCGTCAGGTTTAGGCGGGGCGGGCGCGGCCCCACCGGCGCGGC
CGGCTGCCGGTGGCAACAGTAGTAGTCCGTCGCGGCAGCAGCCGGGGGTG
GGAGGAAGAACAAGCAGACGCGGCAGCGGCGGCCGGGCTAGTGGTGGTGG
TGGCGGCAACGGAGAGGAAGAGGAAGGAGAAACGGGGCAGGATTCTTCGG
CCGAGTTGAGCGGGGCTGTGCCGGCGCAGAGAAATATCTTCGCGGTTTCT
CGGCGGCGAGTTGCGGAGGGGTAAGTCTTTGGCGCCAGCGATGAAGCGGC
CGGGAGGGCGGGGGCCGGGTCCGCCTCGATAATCGGCTCCGTCCAGGCGA
CGGCCGGCGGCGGCAGCAGCAGCAGCACGGCCGGCGGCGGAGGCAGCAGC
AGCAGCACGGTCGGCACCGGCGGCAACAACAACGCGAACGGCGGCGGCGG
CCGCCACGAGCACGAGCACTTGCCGTCGGCCGGGACCGGCGGCGGCGGCG
GTGGCGGGGGGGGGGCGGAAGAAGACGACCAGGACGAGTGCGTGATCTGT
CTCACCGAGCCGAAGAGCACCCTCCTGCTGCCGTGCCGGCACCTGTGCGT
GTGCCAGGAGTGCTTCCGCCACGTGGACAAATGCCCCGTCTGCCGGTCCC
CCTTCGACAACTATATCGTGCTCTCGGGGCCGCCCGAGCCACCACCGCCG
CAGCAGGCTAGCGCGGCGGCACCAAGTGCTGCTGTTCTTGTTACCGGCGG
CAGCGCCAGCGGCGCCGGCGATGAGCTTGCCGCGTCAGGTTTAGGCGGGG
CGGGCGCGGCCCCACCGGCGCGGCCGGCTGCCGGTGGCAACAGTAGTAGT
CCGTCGCGGCAGCAGCCGGGGGTGGGAGGAAGAACAAGCAGACGCGGCAG
CGGCGGCCGGGCTAGTGGTGGTGGTGGCGGCAACGGAGAGGAAGAGGAAG
GAGAAACGGGGCAGGATTCTTCGGCCGAGTTGAGCGGGGCTGTGCCGGCG
CAGAGAAATATCTTCGCGGTTTCTCGGCGGCGAGTTGCGGAGGGGTAA
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