mRNA_L-elsbetiae_contig11371.1207.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11371.1207.1
Unique NamemRNA_L-elsbetiae_contig11371.1207.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11371.1207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11371contigL-elsbetiae_contig11371:146..3214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score61.6
Seed ortholog evalue7.3e-07
Seed eggNOG ortholog185453.XP_006878390.1
Preferred nameTTLL6
KEGG koko:K16582
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003352,GO:0003353,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006464,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0008092,GO:0008150,GO:0008152,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0016874,GO:0016879,GO:0016881,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0032879,GO:0032886,GO:0036064,GO:0036211,GO:0042995,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051013,GO:0051270,GO:0051272,GO:0060632,GO:0065007,GO:0070739,GO:0070740,GO:0071704,GO:0071840,GO:0120025,GO:0120038,GO:0140096,GO:1901564
EggNOG free text desc.Tubulin-tyrosine ligase family
EggNOG OGs34ZE6@311790,38BCD@33154,3BBGM@33208,3CXIW@33213,3J28X@40674,48601@7711,492EW@7742,KOG2158@1,KOG2158@2759
COG Functional cat.O
Best tax levelAfrotheria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04812
Exons2
Model size2005
Cds size921
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11371.1207.1prot_L-elsbetiae_contig11371.1207.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11371 390..2374 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815346.0484087-UTR-L-elsbetiae_contig11371:145..3891622815346.0484087-UTR-L-elsbetiae_contig11371:145..389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11371 146..389 +
1691682852.1033752-UTR-L-elsbetiae_contig11371:145..3891691682852.1033752-UTR-L-elsbetiae_contig11371:145..389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11371 146..389 +
1622815346.0831234-UTR-L-elsbetiae_contig11371:2374..32141622815346.0831234-UTR-L-elsbetiae_contig11371:2374..3214Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11371 2375..3214 +
1691682852.137012-UTR-L-elsbetiae_contig11371:2374..32141691682852.137012-UTR-L-elsbetiae_contig11371:2374..3214Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11371 2375..3214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815346.0576928-CDS-L-elsbetiae_contig11371:389..5121622815346.0576928-CDS-L-elsbetiae_contig11371:389..512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11371 390..512 +
1691682852.1171546-CDS-L-elsbetiae_contig11371:389..5121691682852.1171546-CDS-L-elsbetiae_contig11371:389..512Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11371 390..512 +
1622815346.069304-CDS-L-elsbetiae_contig11371:1576..23741622815346.069304-CDS-L-elsbetiae_contig11371:1576..2374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11371 1577..2374 +
1691682852.1285439-CDS-L-elsbetiae_contig11371:1576..23741691682852.1285439-CDS-L-elsbetiae_contig11371:1576..2374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11371 1577..2374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11371.1207.1

>prot_L-elsbetiae_contig11371.1207.1 ID=prot_L-elsbetiae_contig11371.1207.1|Name=mRNA_L-elsbetiae_contig11371.1207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
MWLTLALGKLGASKKNVISDKKLWMTVWEDAHPAQFAQMKQYLPRTWVDI
ASFENEMDESDLYVYKPVLGFGGEGISFERGDELARHLREQEPARDWIVQ
EFINPFLFHGRKTHMRPITLFIAQPDGTREFFIYNKMRVFTAAQDFDEDR
LLEGGENSFMLLSNMHQNKLLFESDPGNAGKKFEATECVLDAETVLSSAD
SNLSFDKVFSDSKEMHSIIYSIIGDLLECQGTSESLYNNACFHIMASDVA
FDKHGKPYFLEMNTAMAYSDVWTDDEQSEFFDGAAALIKGTASPYKVVDS
SMWERL*
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mRNA from alignment at L-elsbetiae_contig11371:146..3214+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11371.1207.1 ID=mRNA_L-elsbetiae_contig11371.1207.1|Name=mRNA_L-elsbetiae_contig11371.1207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3069bp|location=Sequence derived from alignment at L-elsbetiae_contig11371:146..3214+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCTTTGGCGTGATTGGCGTCGTTCCTGCCTCTCCTGCTCCTGCTCCTC
AGCCGACCAGTGGGGTTGTCCCAGACCCCACGAAGGCCGAGCTGGAGCGT
ATCGGGGACCTGCTGGAGCTTGCCACGGCGGGAAAGTACCCCGGGACGGA
CCACGTCCGCCCCGGTAGGCGCGGCGACATTCCAGTCTGGTCTCAAAGAA
CGGCGGTGCTGTACTACAATCGCCGCCAGGCCGGAGGGGCCCTCATGTGG
CTGACGCTCGCCCTGGGAAAGCTCGGGGCTTCAAAGAAGAACGTGATCTC
CGACAAGAAGCTGTGGATGACCGTGTGGGAGGACGCCCACCCCGCCCAGT
TCGCTCAAATGAAGCAGGTGAGCGGGTGCGGGGGGGTTCTCAAGTCGGGG
GAATGGAATGGAATGGGCTTTTAAGAAGGAGTTGTGGGATCGAGGAAGCA
GGAGTGAGAGGCGATTGAGAGAGTGTTCGGCAAAAGGGAGAAGAGGGAGG
GGGGAGTGCGGAAGGCATAGGTAGGGGCCGGAATATTCTTTGACTGCTCG
CCTTAGCCGCGCAGCATTCCCACGCATCGGAGGAAGCCGTTTCCTCTCCT
GTTCGCGTCGGGCTCTCAACGTTACCGCCACACCTACATACACAACGCGC
TTTGCGGCTTCTTGTACGACTACACTCTTTCTACCTGGCCGGAGGAGAAG
GAAAGTGGGAGGCGGAACGTCGACCATAAAACCCCTCGGTTTCCCCCGGG
AAACGGTGACCCCCCCCCCCGCCATCCACTTTTCGACCGAGCAGCGTTAA
TCAGGTGTTCCCCAGAGGTATTGTGTATCTAAACCAGTACCCCTCGCGAT
AGTTGTTTCCCCTACAGCTTCGCATACCATGTGCTTTTCATCACAGGGTA
TTGAATGAGAACAAATCTCGGGGCTGAATACCTCGTCTGTGAGACTCTGC
ACTACAAATGTGTGATATCCCCTTGAAATTTTATTGGTGCACATATGCTG
GCTAAATTAGGCCCGACATCGCCGCTTGTAAGAGAAAGGTTAGGCTCGGC
CAATCTTTTTGCCGCCGCCCCCCGCCCGCCCCCCAGGCAGCATTCCTCTT
GGCTTAGCTCAAAACACATGGGCTTATCTTCCCTTTCCTGAGCTACCCCC
GAGGGGGCTGTATTTCAACAAAGCAAGAAATCGATGGGTTTGACGAGACG
CTGTGGCAAGCCCTTCCCAAAACCAATGTTCATGCGTGCTAGACCTGCTT
TGCGCTTTTGACTGTCTCCTATCGACCTTGCGTTTAGTTTCTTCTGCCTC
TGACAGCTGTAGCGTACAGACAGCCATTTTTCTCTGCGTTTAGTGTTCTC
GCTGAAATGGCATCTACAGCTGCTCTTGTTTTATTCTCAAGCGGGAACAC
CACATCCATACCCCCGTTTTTTTGTTTTTAGTACTTGCCCAGGACGTGGG
TTGATATCGCTTCGTTTGAGAATGAGATGGACGAGAGCGACCTGTACGTC
TACAAGCCGGTTCTCGGGTTCGGGGGAGAAGGAATCTCGTTCGAGCGCGG
CGATGAACTGGCGCGACACCTTCGGGAGCAGGAGCCGGCTCGCGACTGGA
TCGTGCAGGAGTTCATAAACCCGTTTCTCTTCCACGGGAGGAAAACGCAC
ATGCGGCCCATCACACTGTTCATCGCTCAGCCCGACGGCACGAGAGAGTT
CTTCATCTACAACAAGATGAGGGTGTTCACCGCGGCCCAGGACTTCGATG
AGGATCGGCTGCTGGAGGGCGGGGAAAACTCTTTCATGCTCTTGAGCAAC
ATGCACCAGAACAAGCTCCTGTTCGAGAGCGATCCCGGGAATGCGGGGAA
GAAGTTCGAGGCCACCGAGTGCGTCCTGGACGCGGAAACCGTCTTGAGCT
CTGCCGACAGCAATCTTTCTTTCGACAAGGTGTTTAGCGATTCGAAGGAG
ATGCACTCCATCATTTATTCCATCATTGGGGACCTGCTCGAGTGCCAGGG
GACGAGCGAATCTCTCTACAATAATGCCTGTTTCCACATCATGGCCTCGG
ACGTGGCGTTTGACAAACACGGCAAACCCTACTTTTTGGAGATGAACACC
GCCATGGCCTATTCTGACGTCTGGACAGACGACGAGCAGTCCGAGTTCTT
TGATGGGGCTGCGGCTCTGATTAAAGGCACGGCCTCGCCCTACAAGGTGG
TTGATTCTTCCATGTGGGAGAGATTGTAAAGGTACTGACTAGACTGCTGG
CTGTAGATGAGAAGCCCTAGTCTAATTGAGTCCTCTGGCTCCCTCCCGCC
TGGGACGCAAAGAAGACAGGTCGTTTTTCGTGCAGGGTCAGTCCAACACC
TCACGATCGTTTCGTGTGCTATTTATTTGTAGATACGCCAGAAGGTTGCC
GGACGAACGAGCAATAAACAGCGAGTGCCTTACTAAATGGCATGAGGCCG
GGTGTGCAGCGTAGGCTCGATCATCATATTGGTCAGCGACGAACTTGAAT
GGTATTTGAAGGACGCATTCCGCAACAAACTGTCAAATATGTACTTCGTA
TATACTGTACAAGTCTTTTTTCGGAGAAAACGTTCCAGGATAGGCTTTCC
AACGCGCACTTCTTTTTTGAGGCTCGATAGGGCAGTAGATGTCGCCAAGA
GACGTCGGTCCTTCAGGCTGGTCGAGATAAAGGAGAAGTCGTGTCCAGAT
GAAGTGCGGAGTCTACCTACGTATTGCGTATATTATTGATGTATAGATGG
CCTGGGCTGGTAGGTTGCCCAGGTTGCTTCCTTAAAGTTGTTTTCAGTTA
GTTGTGCGGGCTCTCGTGATGACTACCATACTACAGTAAAGGGCGGATGG
GGAGATGCTCGCTCGGTAGCATTTGTGCCCGCGCGTGTGTTTCGTGTGAA
TTGTATCTAGATGCGAGTGTGGGTCACGGCTGTTGATTCTTCGTTTTTGG
GGAGGACCTGGTCATTCCACATGATCATACGTCGAGTTTGTTACTCGGCG
CCATTCTGCATAGCCGAATCGCCGTCACCGTCAAGAGACGATACGCTTGA
TTCATCCTTCACACCTGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11371:146..3214+

>mRNA_L-elsbetiae_contig11371.1207.1 ID=mRNA_L-elsbetiae_contig11371.1207.1|Name=mRNA_L-elsbetiae_contig11371.1207.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1842bp|location=Sequence derived from alignment at L-elsbetiae_contig11371:146..3214+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGCTGACGCTCGCCCTGGGAAAGCTCGGGGCTTCAAAGAAGAACGT
GATCTCCGACAAGAAGCTGTGGATGACCGTGTGGGAGGACGCCCACCCCG
CCCAGTTCGCTCAAATGAAGCAGATGTGGCTGACGCTCGCCCTGGGAAAG
CTCGGGGCTTCAAAGAAGAACGTGATCTCCGACAAGAAGCTGTGGATGAC
CGTGTGGGAGGACGCCCACCCCGCCCAGTTCGCTCAAATGAAGCAGTACT
TGCCCAGGACGTGGGTTGATATCGCTTCGTTTGAGAATGAGATGGACGAG
AGCGACCTGTACGTCTACAAGCCGGTTCTCGGGTTCGGGGGAGAAGGAAT
CTCGTTCGAGCGCGGCGATGAACTGGCGCGACACCTTCGGGAGCAGGAGC
CGGCTCGCGACTGGATCGTGCAGGAGTTCATAAACCCGTTTCTCTTCCAC
GGGAGGAAAACGCACATGCGGCCCATCACACTGTTCATCGCTCAGCCCGA
CGGCACGAGAGAGTTCTTCATCTACAACAAGATGAGGGTGTTCACCGCGG
CCCAGGACTTCGATGAGGATCGGCTGCTGGAGGGCGGGGAAAACTCTTTC
ATGCTCTTGAGCAACATGCACCAGAACAAGCTCCTGTTCGAGAGCGATCC
CGGGAATGCGGGGAAGAAGTTCGAGGCCACCGAGTGCGTCCTGGACGCGG
AAACCGTCTTGAGCTCTGCCGACAGCAATCTTTCTTTCGACAAGGTGTTT
AGCGATTCGAAGGAGATGCACTCCATCATTTATTCCATCATTGGGGACCT
GCTCGAGTGCCAGGGGACGAGCGAATCTCTCTACAATAATGCCTGTTTCC
ACATCATGGCCTCGGACGTGGCGTTTGACAAACACGGCAAACCCTACTTT
TTGGAGATGAACACCGCCATGGCCTATTCTGACGTCTGGACAGACGACGA
GCAGTCCGAGTTCTTTGATGGGGCTGCGGCTCTGATTAAAGGCACGGCCT
CGCCCTACAAGGTGGTTGATTCTTCCATGTGGGAGAGATTGTAATACTTG
CCCAGGACGTGGGTTGATATCGCTTCGTTTGAGAATGAGATGGACGAGAG
CGACCTGTACGTCTACAAGCCGGTTCTCGGGTTCGGGGGAGAAGGAATCT
CGTTCGAGCGCGGCGATGAACTGGCGCGACACCTTCGGGAGCAGGAGCCG
GCTCGCGACTGGATCGTGCAGGAGTTCATAAACCCGTTTCTCTTCCACGG
GAGGAAAACGCACATGCGGCCCATCACACTGTTCATCGCTCAGCCCGACG
GCACGAGAGAGTTCTTCATCTACAACAAGATGAGGGTGTTCACCGCGGCC
CAGGACTTCGATGAGGATCGGCTGCTGGAGGGCGGGGAAAACTCTTTCAT
GCTCTTGAGCAACATGCACCAGAACAAGCTCCTGTTCGAGAGCGATCCCG
GGAATGCGGGGAAGAAGTTCGAGGCCACCGAGTGCGTCCTGGACGCGGAA
ACCGTCTTGAGCTCTGCCGACAGCAATCTTTCTTTCGACAAGGTGTTTAG
CGATTCGAAGGAGATGCACTCCATCATTTATTCCATCATTGGGGACCTGC
TCGAGTGCCAGGGGACGAGCGAATCTCTCTACAATAATGCCTGTTTCCAC
ATCATGGCCTCGGACGTGGCGTTTGACAAACACGGCAAACCCTACTTTTT
GGAGATGAACACCGCCATGGCCTATTCTGACGTCTGGACAGACGACGAGC
AGTCCGAGTTCTTTGATGGGGCTGCGGCTCTGATTAAAGGCACGGCCTCG
CCCTACAAGGTGGTTGATTCTTCCATGTGGGAGAGATTGTAA
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