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Homology
BLAST of mRNA_L-elsbetiae_contig1137.1204.1 vs. uniprot
Match: A0A6H5K407_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K407_9PHAE) HSP 1 Score: 270 bits (691), Expect = 2.030e-81 Identity = 258/533 (48.41%), Postives = 299/533 (56.10%), Query Frame = 1
Query: 16 ASPTSSQGSWVVDPEEGWGGLGAV-----------PVPRSPVNPQQR--RFSPASPSS-LRGWAQVPVSPPAAEYPAMMANI-HSPPASPGSSSXXXXXXXXXXXXXXA---RAAAGEGLVALARDQDQN--------------ASLMDISXXXXXXXXXXXXXXXXXXXGVVQRSLPFETFEAFETPGTGGFGRDSGXXXXXXXXWADGARAGVEV---GVGCTTVDDVNEMEMDVADFEHADSPGEHEHAFVMRAAPGMTAAEAVEAIAEAAELRGITPTSVVLSHTQVSPSRLSSGTGGRSTSGGASPPLTPQETKETDGRAQEQEIMFRHGLG----------YRSVTPPQNPSPSSARAXXXXXXXXXGVAGVPDVDAAPIQRGSVGSGTG-TCIPMDATAVGI-VDVDVEVGGKYDGKQMDRLWRWTGLITAAKMGVIPIIVCATVAALSTQAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXTRCFSKRRPXXXXXXXXXFPDARIDRC---GMPIPYCVAPSVACA 1464
+SPTSSQGSWVVDP++GW G+ VP SP +P++ R +P SPSS LR WAQVP+SPPAAEYPAM + +SPP SPGS R+ AGEGLVALARD++ + +MD S + RSLP ETFEA E G G +G A A G + GVG T MDV+ F P + AFVM AAPGMTAAEAVEAIAEAAEL GITPTSVVLS T +SPSR SSG +G + Q + FR G +R+ P +N S S+A XXXXX GVA VPD+DA+ + +V + +G T IPMD TAVG+ VDVD +V G YD RLWRWTG +TAAKMGVIPIIVCATVAALSTQ+ G XXXXXXXXXXXXXXXXXXX TRC S+ XXXXXXX FPD RIDRC GMP+PYCVAPSVACA
Sbjct: 27 SSPTSSQGSWVVDPDDGWDDSGSTNVGPNELPPSAAVPPSPESPRREHHRRTPLSPSSPLRSWAQVPMSPPAAEYPAMTTSTANSPPPSPGSVRSLKSVGSVSSDGGGGSSRRSVAGEGLVALARDENPTLDTTGALLLTPRLASKVMDTSDSAAPTGAVSRSPAV-----LAPRSLPLETFEALEAQGFSGAWGGAG---------AGSASTGQDREVDGVGAATAG------MDVSGF-----PDPADEAFVMTAAPGMTAAEAVEAIAEAAELTGITPTSVVLSRTTMSPSRASSG-----------------RPSPNEGEEKAQGVTFRRAHGSPAATAAAARFRAREPLRNLSSSTANTAXXXXX---GVARVPDIDASRDESVTVPAASGSTYIPMD-TAVGMGVDVD-DVDGTYD-----RLWRWTGFLTAAKMGVIPIIVCATVAALSTQSSSGDRGXXXXXXXXXXXXXXXXXXXG---TRCSSRXXXXXXXXXXGCFPDVRIDRCVYGGMPMPYCVAPSVACA 504
BLAST of mRNA_L-elsbetiae_contig1137.1204.1 vs. uniprot
Match: D7FYP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP0_ECTSI) HSP 1 Score: 241 bits (614), Expect = 4.850e-70 Identity = 257/516 (49.81%), Postives = 295/516 (57.17%), Query Frame = 1
Query: 16 ASPTSSQGSWVVDPEEGWGGLGAV-----------PVPRSPVNPQQRRFSPASPSS--LRGWAQVPVSPPAAEYPAMMANI-HSPPASPGS--SSXXXXXXXXXXXXXXARAAAGEGLVALARDQDQN--------ASLMDISXXXXXXXXXXXXXXXXXXXGVVQRSLPFETFEAFETPG-TGGFGRDSGXXXXXXXXWADGARAGVEV-GVGCTTVDDVNEMEMDVADFEHADSPGEHEHAFVMRAAPGMTAAEAVEAIAEAAELRGITPTSVVLSHTQVSPSRLSSGTGGRSTSGGASPPLTPQETKETDGRAQEQEIMFRHGLGYRSVTPPQNPSPSSARAXXXXXXXXXGVAGVPDVDAAPIQRGSVGSGTG-TCIPMDATAVGIVDVDVEVG---GKYDGKQMDRLWRWTGLITAAKMGVIPIIVCATVAALSTQAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXTRCFSKRRPXXXXXXXXXFPDARIDRC---GMPIPYCVAPSVACA 1464
+SPTSSQGSWVVDP++GW G+ VP SP +P+ +PSS LR WAQVP+SPPAAEYPAM N +SPP SPGS S + AGEGLVALARD++ +++MD S +V R LPFETFEA E G +G +GR + G EV GVG T MDV+ F AD E AFVM AAPGMTAAEAVEAIAEAAEL G+TPTSVVLS T VSPSR SSG + + +T + + A R +R+ P +N S SS XXXXXXXXX VPD+D + +V + +G TCIPMD TAVG+ G YD RLWRWTG +TAAKMGVIPIIVCATVAALSTQ+ XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXX FPD RIDRC GMP+PYCVAPSVACA
Sbjct: 26 SSPTSSQGSWVVDPDDGWDDSGSANVSPNELAPSAAVPPSPESPRGEHHGRTTPSSSPLRSWAQVPMSPPAAEYPAMTTNTANSPPPSPGSVRSLKSAGSVSSGGGGSSRGSVAGEGLVALARDENPTPDTTPPLTSNVMDTSDSAAPRAVGSHSSHSPAV--LVPRLLPFETFEALEAQGFSGAWGRAGAG--------SASTGQGREVDGVGAATAG------MDVSGF--ADPADE---AFVMTAAPGMTAAEAVEAIAEAAELTGVTPTSVVLSRTTVSPSRASSGRPSPNEGEEKAEGVTFRRANSSPTAAXXXXXXXR----FRAREPLRNLSASSTANXXXXXXXXX--XRVPDIDPSRDDSVTVPAASGSTCIPMD-TAVGMXXXXXXXXXXXGTYD-----RLWRWTGFLTAAKMGVIPIIVCATVAALSTQS---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCFPDVRIDRCVYGGMPMPYCVAPSVACA 505
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-17_000180.1 |
| Exons | 2 |
| Model size | 1467 |
| Cds size | 1467 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815345.8520916-CDS-L-elsbetiae_contig1137:11908..12349 | 1622815345.8520916-CDS-L-elsbetiae_contig1137:11908..12349 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1137 11909..12349 - |
| 1691682851.9522445-CDS-L-elsbetiae_contig1137:11908..12349 | 1691682851.9522445-CDS-L-elsbetiae_contig1137:11908..12349 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1137 11909..12349 - |
| 1622815345.8619347-CDS-L-elsbetiae_contig1137:13421..14447 | 1622815345.8619347-CDS-L-elsbetiae_contig1137:13421..14447 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1137 13422..14447 - |
| 1691682851.963753-CDS-L-elsbetiae_contig1137:13421..14447 | 1691682851.963753-CDS-L-elsbetiae_contig1137:13421..14447 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1137 13422..14447 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1137.1204.1 >prot_L-elsbetiae_contig1137.1204.1 ID=prot_L-elsbetiae_contig1137.1204.1|Name=mRNA_L-elsbetiae_contig1137.1204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=489bp
MTVTAASPTSSQGSWVVDPEEGWGGLGAVPVPRSPVNPQQRRFSPASPSS LRGWAQVPVSPPAAEYPAMMANIHSPPASPGSSSSVRSVSSSGSTGSGAR AAAGEGLVALARDQDQNASLMDISDVSSSSSSSFSSSAAGAAGGVVQRSL PFETFEAFETPGTGGFGRDSGGLGRGAGAWADGARAGVEVGVGCTTVDDV NEMEMDVADFEHADSPGEHEHAFVMRAAPGMTAAEAVEAIAEAAELRGIT PTSVVLSHTQVSPSRLSSGTGGRSTSGGASPPLTPQETKETDGRAQEQEI MFRHGLGYRSVTPPQNPSPSSARASASAAAAVAGVAGVPDVDAAPIQRGS VGSGTGTCIPMDATAVGIVDVDVEVGGKYDGKQMDRLWRWTGLITAAKMG VIPIIVCATVAALSTQAGGGSGGDRGEGGRGGGGGGGGGARGGGGGTRCF SKRRPRGGGGGSGCFPDARIDRCGMPIPYCVAPSVACA* back to topmRNA from alignment at L-elsbetiae_contig1137:11909..14447- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1137.1204.1 ID=mRNA_L-elsbetiae_contig1137.1204.1|Name=mRNA_L-elsbetiae_contig1137.1204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2539bp|location=Sequence derived from alignment at L-elsbetiae_contig1137:11909..14447- (Laminarionema elsbetiae ELsaHSoW15) ATGACCGTGACGGCTGCGTCTCCCACGTCGAGTCAGGGGTCCTGGGTGGT
GGACCCGGAAGAGGGGTGGGGGGGGCTAGGCGCGGTCCCCGTGCCCCGCT
CGCCCGTTAACCCGCAGCAGCGCCGATTTTCGCCAGCGTCGCCGTCGTCG
CTTCGGGGGTGGGCACAGGTGCCGGTGTCGCCGCCCGCCGCGGAGTACCC
GGCCATGATGGCCAACATCCACAGCCCTCCGGCGTCCCCTGGCAGCAGCA
GCAGCGTGAGGAGCGTGTCCAGCAGCGGCAGCACCGGCAGCGGCGCGAGG
GCGGCGGCGGGCGAGGGTCTCGTGGCGCTGGCTCGCGACCAGGACCAGAA
CGCGAGTCTGATGGACATCTCTGACGTGTCGTCTTCGTCTTCGTCTTCGT
TTTCGTCGTCAGCCGCTGGTGCTGCGGGTGGGGTCGTGCAGCGGTCGCTG
CCGTTCGAAACGTTTGAAGCGTTCGAGACGCCCGGGACCGGAGGCTTTGG
CCGAGACTCTGGAGGGCTTGGGAGAGGTGCAGGCGCTTGGGCAGACGGGG
CGCGCGCGGGAGTAGAGGTAGGGGTGGGGTGCACCACCGTCGACGACGTG
AACGAGATGGAGATGGACGTGGCTGACTTCGAGCATGCGGACTCACCGGG
CGAGCACGAGCACGCGTTCGTGATGAGGGCGGCCCCGGGCATGACGGCAG
CGGAAGCCGTGGAGGCAATCGCCGAGGCGGCGGAGCTGAGGGGCATCACC
CCGACGTCGGTGGTTCTGTCCCACACGCAGGTGTCGCCGTCGCGCCTGTC
CAGCGGTACCGGCGGTAGATCTACCAGCGGCGGCGCCTCCCCACCCCTCA
CCCCCCAAGAGACCAAAGAGACCGACGGCCGTGCCCAAGAACAAGAAATA
ATGTTCCGCCACGGCCTCGGCTACCGATCCGTGACACCGCCGCAGAACCC
TTCGCCTTCCAGCGCTCGTGCTTCTGCTTCTGCTGCTGCCGCTGTTGCTG
GCGTGGCCGGTGTTCCTGACGTTGATGTTGCTGTTGCTGGAGTTGGCGGC
TCGAGGGTGAGTGGTGCTGTCGGAAGGTAGATGGGTACTGACTGCCGTAG
GTGACACAAGATACCACACACACACCCTGGACGGGTTTTCAAAGCTCGGT
TCCTTCCCACCAAGAAGAGTGACAGTAGTAGTGCCGGAAGGGGTGACGTG
GCTTGGAAAGATCTAGTCGAGGGCTGTCCCAAAATATGCCGTCTGGTGCT
ACAACAACAGTAGCACCTTTTTCGTTACGGAATGATCGAGCTCTAAAATT
TGGTCCAGGGGGTATGGCATCTTGTGTCACCTACGGTAAGCCCGGCGTAG
TACATGTGTGTCCGCTCTCATTGACCATACCGCTATACTGCTGCTGTACA
TATAATGCTTTCTCTTGGGGTGGGGTATGTTGGTGTTTGACGTGTCGGCC
CGGGTGGTAGACGTGCCAGCCTCTGTGTGTTTGCCCCGACTCTCCTCCTG
CGGTGCTGGTATTAAATCAACACGAGGAGGATTCACAGCAGTCCCTCCCC
TCTTTTTGGTGTACGTATTGTTGTTGTTTTCTTCACATTTGCTCGTAAAA
TAATGTATGTATGTTGTGCTGTATCCTTAGAAGTAAAGGGAAATACTTGA
GAGCTTCCCGGGTATCTTTTTATCTAGTGTATACAAATGTCAGCAGGCTA
CGTCCAGTCTTTCTGTAGGTGTATACCAATACCTGAACAAAGTTTTGTTG
AGATTCCATCGTAGTATGTAGCGGTGTGCAGTGTGCGGTGCTCATCGTCC
TGTGACCACGGGAATCGACCGCGTCAGTGTTGGATTAGCACGGGTTCATG
GAGGTACTGGATAGAGAGATCGGAACGGTTTCAAATGTGAAGACAACAAC
AACAACAATCGAACTCCGTGATCTGATATGATCCGATCGTTCGATACAGG
TTCCGACTACCGAGTTTTCGGCCGTCTGTCCAATCCCCACACCAAGTTTT
GGCCCCAGTTTCACTTGGCTTGAATTTTGACACTTGACTTGACCGCTGAT
TTGACCTCTGACTTGACCATCGACGGCTTCACTTGACTTGAGCAGGAGGC
TGCGCCTATCCAGCGTGGATCTGTCGGCAGCGGCACCGGCACGTGCATCC
CGATGGACGCCACTGCAGTCGGCATAGTAGATGTGGATGTGGAAGTGGGT
GGGAAGTACGACGGCAAGCAGATGGACAGGCTGTGGAGGTGGACGGGCCT
CATCACCGCCGCCAAGATGGGCGTGATCCCCATCATCGTCTGCGCCACCG
TCGCTGCCCTATCCACGCAAGCCGGCGGAGGAAGCGGGGGAGACCGCGGC
GAGGGCGGCAGGGGTGGTGGCGGGGGCGGGGGGGGTGGAGCAAGAGGGGG
TGGCGGGGGTACCCGGTGCTTCAGCAAGAGGCGCCCCAGGGGCGGGGGGG
GCGGGAGTGGCTGCTTCCCCGACGCCCGCATCGACCGGTGCGGCATGCCG
ATCCCCTACTGCGTGGCTCCCTCCGTCGCCTGCGCCTGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1137:11909..14447- >mRNA_L-elsbetiae_contig1137.1204.1 ID=mRNA_L-elsbetiae_contig1137.1204.1|Name=mRNA_L-elsbetiae_contig1137.1204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2934bp|location=Sequence derived from alignment at L-elsbetiae_contig1137:11909..14447- (Laminarionema elsbetiae ELsaHSoW15) ATGACCGTGACGGCTGCGTCTCCCACGTCGAGTCAGGGGTCCTGGGTGGT GGACCCGGAAGAGGGGTGGGGGGGGCTAGGCGCGGTCCCCGTGCCCCGCT CGCCCGTTAACCCGCAGCAGCGCCGATTTTCGCCAGCGTCGCCGTCGTCG CTTCGGGGGTGGGCACAGGTGCCGGTGTCGCCGCCCGCCGCGGAGTACCC GGCCATGATGGCCAACATCCACAGCCCTCCGGCGTCCCCTGGCAGCAGCA GCAGCGTGAGGAGCGTGTCCAGCAGCGGCAGCACCGGCAGCGGCGCGAGG GCGGCGGCGGGCGAGGGTCTCGTGGCGCTGGCTCGCGACCAGGACCAGAA CGCGAGTCTGATGGACATCTCTGACGTGTCGTCTTCGTCTTCGTCTTCGT TTTCGTCGTCAGCCGCTGGTGCTGCGGGTGGGGTCGTGCAGCGGTCGCTG CCGTTCGAAACGTTTGAAGCGTTCGAGACGCCCGGGACCGGAGGCTTTGG CCGAGACTCTGGAGGGCTTGGGAGAGGTGCAGGCGCTTGGGCAGACGGGG CGCGCGCGGGAGTAGAGGTAGGGGTGGGGTGCACCACCGTCGACGACGTG AACGAGATGGAGATGGACGTGGCTGACTTCGAGCATGCGGACTCACCGGG CGAGCACGAGCACGCGTTCGTGATGAGGGCGGCCCCGGGCATGACGGCAG CGGAAGCCGTGGAGGCAATCGCCGAGGCGGCGGAGCTGAGGGGCATCACC CCGACGTCGGTGGTTCTGTCCCACACGCAGGTGTCGCCGTCGCGCCTGTC CAGCGGTACCGGCGGTAGATCTACCAGCGGCGGCGCCTCCCCACCCCTCA CCCCCCAAGAGACCAAAGAGACCGACGGCCGTGCCCAAGAACAAGAAATA ATGTTCCGCCACGGCCTCGGCTACCGATCCGTGACACCGCCGCAGAACCC TTCGCCTTCCAGCGCTCGTGCTTCTGCTTCTGCTGCTGCCGCTGTTGCTG GCGTGGCCGGTGTTCCTGACGTTGATATGACCGTGACGGCTGCGTCTCCC ACGTCGAGTCAGGGGTCCTGGGTGGTGGACCCGGAAGAGGGGTGGGGGGG GCTAGGCGCGGTCCCCGTGCCCCGCTCGCCCGTTAACCCGCAGCAGCGCC GATTTTCGCCAGCGTCGCCGTCGTCGCTTCGGGGGTGGGCACAGGTGCCG GTGTCGCCGCCCGCCGCGGAGTACCCGGCCATGATGGCCAACATCCACAG CCCTCCGGCGTCCCCTGGCAGCAGCAGCAGCGTGAGGAGCGTGTCCAGCA GCGGCAGCACCGGCAGCGGCGCGAGGGCGGCGGCGGGCGAGGGTCTCGTG GCGCTGGCTCGCGACCAGGACCAGAACGCGAGTCTGATGGACATCTCTGA CGTGTCGTCTTCGTCTTCGTCTTCGTTTTCGTCGTCAGCCGCTGGTGCTG CGGGTGGGGTCGTGCAGCGGTCGCTGCCGTTCGAAACGTTTGAAGCGTTC GAGACGCCCGGGACCGGAGGCTTTGGCCGAGACTCTGGAGGGCTTGGGAG AGGTGCAGGCGCTTGGGCAGACGGGGCGCGCGCGGGAGTAGAGGTAGGGG TGGGGTGCACCACCGTCGACGACGTGAACGAGATGGAGATGGACGTGGCT GACTTCGAGCATGCGGACTCACCGGGCGAGCACGAGCACGCGTTCGTGAT GAGGGCGGCCCCGGGCATGACGGCAGCGGAAGCCGTGGAGGCAATCGCCG AGGCGGCGGAGCTGAGGGGCATCACCCCGACGTCGGTGGTTCTGTCCCAC ACGCAGGTGTCGCCGTCGCGCCTGTCCAGCGGTACCGGCGGTAGATCTAC CAGCGGCGGCGCCTCCCCACCCCTCACCCCCCAAGAGACCAAAGAGACCG ACGGCCGTGCCCAAGAACAAGAAATAATGTTCCGCCACGGCCTCGGCTAC CGATCCGTGACACCGCCGCAGAACCCTTCGCCTTCCAGCGCTCGTGCTTC TGCTTCTGCTGCTGCCGCTGTTGCTGGCGTGGCCGGTGTTCCTGACGTTG ATGCTGCGCCTATCCAGCGTGGATCTGTCGGCAGCGGCACCGGCACGTGC ATCCCGATGGACGCCACTGCAGTCGGCATAGTAGATGTGGATGTGGAAGT GGGTGGGAAGTACGACGGCAAGCAGATGGACAGGCTGTGGAGGTGGACGG GCCTCATCACCGCCGCCAAGATGGGCGTGATCCCCATCATCGTCTGCGCC ACCGTCGCTGCCCTATCCACGCAAGCCGGCGGAGGAAGCGGGGGAGACCG CGGCGAGGGCGGCAGGGGTGGTGGCGGGGGCGGGGGGGGTGGAGCAAGAG GGGGTGGCGGGGGTACCCGGTGCTTCAGCAAGAGGCGCCCCAGGGGCGGG GGGGGCGGGAGTGGCTGCTTCCCCGACGCCCGCATCGACCGGTGCGGCAT GCCGATCCCCTACTGCGTGGCTCCCTCCGTCGCCTGCGCCTGAGCTGCGC CTATCCAGCGTGGATCTGTCGGCAGCGGCACCGGCACGTGCATCCCGATG GACGCCACTGCAGTCGGCATAGTAGATGTGGATGTGGAAGTGGGTGGGAA GTACGACGGCAAGCAGATGGACAGGCTGTGGAGGTGGACGGGCCTCATCA CCGCCGCCAAGATGGGCGTGATCCCCATCATCGTCTGCGCCACCGTCGCT GCCCTATCCACGCAAGCCGGCGGAGGAAGCGGGGGAGACCGCGGCGAGGG CGGCAGGGGTGGTGGCGGGGGCGGGGGGGGTGGAGCAAGAGGGGGTGGCG GGGGTACCCGGTGCTTCAGCAAGAGGCGCCCCAGGGGCGGGGGGGGCGGG AGTGGCTGCTTCCCCGACGCCCGCATCGACCGGTGCGGCATGCCGATCCC CTACTGCGTGGCTCCCTCCGTCGCCTGCGCCTGA back to top
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