mRNA_L-elsbetiae_contig11369.1202.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11369.1202.1
Unique NamemRNA_L-elsbetiae_contig11369.1202.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11369.1202.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.290e-7
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:  115 CIHSGCTTRPSYGVAGGGRPEFCSAHKKDGMVNVASKRC 231
            C H+ CT RP+YGVAG  + EFCS H +DGMVNV +KRC
Sbjct:    4 CGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
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BLAST of mRNA_L-elsbetiae_contig11369.1202.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.160e-7
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   97 GRMPRNCIHSGCTTRPSYGVAGGGRPEFCSAHKKDGMVNVASKRC 231
            G     C H  CT RP+YGVAG  + EFCS H +DGMVNV +KRC
Sbjct:   58 GSRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
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BLAST of mRNA_L-elsbetiae_contig11369.1202.1 vs. uniprot
Match: A0A6H5JGG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 6.120e-7
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  115 CIHSGCTTRPSYGVAGGGRPEFCSAHKKDGMVNVASKRC 231
            C   GCTTRPSYG AG  + EFCS HKK GM+N+ SKRC
Sbjct:   27 CQEDGCTTRPSYGNAGCKKAEFCSQHKKPGMMNLVSKRC 65
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BLAST of mRNA_L-elsbetiae_contig11369.1202.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 9.350e-7
Identity = 25/45 (55.56%), Postives = 28/45 (62.22%), Query Frame = 1 
Query:   97 GRMPRNCIHSGCTTRPSYGVAGGGRPEFCSAHKKDGMVNVASKRC 231
            G+  R C   GCT RPSYG+ G  + EFCS H K GM NV  KRC
Sbjct:   25 GKGQRCCQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKKRC 69
[Close]
BLAST of mRNA_L-elsbetiae_contig11369.1202.1 vs. uniprot
Match: A0A6H5KY67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.120e-6
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:   97 GRMPRNCIHSGCTTRPSYGVAGGGRPEFCSAHKKDGMVNVASKRC 231
            G+  R C   GCT RPSYG+ G  + EFCS H K GM+N+  KRC
Sbjct:   21 GKGNRCCQEHGCTVRPSYGIDGCKKAEFCSKHSKPGMINLTKKRC 65
[Close]
BLAST of mRNA_L-elsbetiae_contig11369.1202.1 vs. uniprot
Match: D8LDM3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM3_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 4.430e-5
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:  109 RNCIHSGCTTRPSYGV--AGGGRPEFCSAHKKDGMVNV 216
            R CIH GCT RPS+G   A   +PE+C+ HKK+GMVNV
Sbjct:   10 RGCIHPGCTKRPSFGARDAKNNKPEYCTVHKKEGMVNV 47
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11369.1202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FI73_ECTSI4.290e-764.10EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE5.160e-757.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG2_9PHAE6.120e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY22_ECTSI9.350e-755.56EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KY67_9PHAE3.120e-653.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDM3_ECTSI4.430e-560.53EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11369contigL-elsbetiae_contig11369:5568..6284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size719
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.7101433-CDS-L-elsbetiae_contig11369:5567..62841622815345.7101433-CDS-L-elsbetiae_contig11369:5567..6284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11369 5568..6284 +
1691682851.8391683-CDS-L-elsbetiae_contig11369:5567..62841691682851.8391683-CDS-L-elsbetiae_contig11369:5567..6284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11369 5568..6284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11369.1202.1prot_L-elsbetiae_contig11369.1202.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11369 5568..6284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11369.1202.1

>prot_L-elsbetiae_contig11369.1202.1 ID=prot_L-elsbetiae_contig11369.1202.1|Name=mRNA_L-elsbetiae_contig11369.1202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
CYTLALQLARGVTTSSVSPPCVLWPAEQPRKPGRMPRNCIHSGCTTRPSY
GVAGGGRPEFCSAHKKDGMVNVASKRCGQQGCTKQPSYGMGGSGEREFCS
AHKKGGMVDLKYKRRCSHQGCIKQPSYGVAGSGKPPEFCSAHKKDGMVDV
VNKRCGYQGCIKRSLYGVGGSGKPEFCSAHKKDRMVDLNNKRCGHQGCTK
QPSYGVAGSGKAEFCSAHKKEGMVNVASKRCGQQGCTKQ
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mRNA from alignment at L-elsbetiae_contig11369:5568..6284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11369.1202.1 ID=mRNA_L-elsbetiae_contig11369.1202.1|Name=mRNA_L-elsbetiae_contig11369.1202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=717bp|location=Sequence derived from alignment at L-elsbetiae_contig11369:5568..6284+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTACACACTGGCACTGCAGCTTGCACGTGGCGTGACAACATCTTCCGT
ATCACCGCCTTGTGTTTTATGGCCCGCAGAGCAGCCGAGAAAGCCAGGAA
GGATGCCACGTAATTGTATCCACAGCGGCTGCACCACACGGCCGTCATAT
GGCGTGGCCGGTGGCGGCAGGCCGGAGTTCTGCTCTGCACACAAGAAGGA
CGGGATGGTAAACGTTGCCAGTAAGAGGTGCGGCCAACAAGGTTGCACCA
AGCAGCCGTCATATGGCATGGGCGGTAGCGGCGAGCGGGAGTTTTGCTCT
GCACACAAGAAGGGCGGGATGGTGGACTTGAAATACAAGAGGAGGTGCAG
CCATCAAGGTTGCATAAAGCAGCCGTCATATGGCGTGGCCGGTAGCGGCA
AGCCACCGGAGTTCTGCTCGGCACACAAGAAGGACGGGATGGTGGACGTG
GTGAACAAGAGGTGCGGCTATCAGGGTTGCATCAAGCGGTCGTTATATGG
CGTGGGCGGTAGCGGCAAGCCGGAGTTCTGCTCTGCACACAAGAAGGACA
GGATGGTGGACTTGAACAATAAGAGGTGCGGCCATCAGGGTTGCACCAAG
CAGCCGTCATATGGCGTGGCCGGTAGCGGCAAGGCAGAGTTCTGCTCTGC
ACACAAGAAGGAAGGGATGGTGAACGTGGCCAGTAAGAGGTGCGGCCAAC
AAGGTTGCACCAAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11369:5568..6284+

>mRNA_L-elsbetiae_contig11369.1202.1 ID=mRNA_L-elsbetiae_contig11369.1202.1|Name=mRNA_L-elsbetiae_contig11369.1202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig11369:5568..6284+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTACACACTGGCACTGCAGCTTGCACGTGGCGTGACAACATCTTCCGT
ATCACCGCCTTGTGTTTTATGGCCCGCAGAGCAGCCGAGAAAGCCAGGAA
GGATGCCACGTAATTGTATCCACAGCGGCTGCACCACACGGCCGTCATAT
GGCGTGGCCGGTGGCGGCAGGCCGGAGTTCTGCTCTGCACACAAGAAGGA
CGGGATGGTAAACGTTGCCAGTAAGAGGTGCGGCCAACAAGGTTGCACCA
AGCAGCCGTCATATGGCATGGGCGGTAGCGGCGAGCGGGAGTTTTGCTCT
GCACACAAGAAGGGCGGGATGGTGGACTTGAAATACAAGAGGAGGTGCAG
CCATCAAGGTTGCATAAAGCAGCCGTCATATGGCGTGGCCGGTAGCGGCA
AGCCACCGGAGTTCTGCTCGGCACACAAGAAGGACGGGATGGTGGACGTG
GTGAACAAGAGGTGCGGCTATCAGGGTTGCATCAAGCGGTCGTTATATGG
CGTGGGCGGTAGCGGCAAGCCGGAGTTCTGCTCTGCACACAAGAAGGACA
GGATGGTGGACTTGAACAATAAGAGGTGCGGCCATCAGGGTTGCACCAAG
CAGCCGTCATATGGCGTGGCCGGTAGCGGCAAGGCAGAGTTCTGCTCTGC
ACACAAGAAGGAAGGGATGGTGAACGTGGCCAGTAAGAGGTGCGGCCAAC
AAGGTTGCACCAAGCAGTGCTACACACTGGCACTGCAGCTTGCACGTGGC
GTGACAACATCTTCCGTATCACCGCCTTGTGTTTTATGGCCCGCAGAGCA
GCCGAGAAAGCCAGGAAGGATGCCACGTAATTGTATCCACAGCGGCTGCA
CCACACGGCCGTCATATGGCGTGGCCGGTGGCGGCAGGCCGGAGTTCTGC
TCTGCACACAAGAAGGACGGGATGGTAAACGTTGCCAGTAAGAGGTGCGG
CCAACAAGGTTGCACCAAGCAGCCGTCATATGGCATGGGCGGTAGCGGCG
AGCGGGAGTTTTGCTCTGCACACAAGAAGGGCGGGATGGTGGACTTGAAA
TACAAGAGGAGGTGCAGCCATCAAGGTTGCATAAAGCAGCCGTCATATGG
CGTGGCCGGTAGCGGCAAGCCACCGGAGTTCTGCTCGGCACACAAGAAGG
ACGGGATGGTGGACGTGGTGAACAAGAGGTGCGGCTATCAGGGTTGCATC
AAGCGGTCGTTATATGGCGTGGGCGGTAGCGGCAAGCCGGAGTTCTGCTC
TGCACACAAGAAGGACAGGATGGTGGACTTGAACAATAAGAGGTGCGGCC
ATCAGGGTTGCACCAAGCAGCCGTCATATGGCGTGGCCGGTAGCGGCAAG
GCAGAGTTCTGCTCTGCACACAAGAAGGAAGGGATGGTGAACGTGGCCAG
TAAGAGGTGCGGCCAACAAGGTTGCACCAAGCAG
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