mRNA_L-elsbetiae_contig11368.1201.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11368.1201.1
Unique NamemRNA_L-elsbetiae_contig11368.1201.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11368.1201.1 vs. uniprot
Match: D7FTS8_ECTSI (SOS2 (SALT OVERLY SENSITIVE 2) kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS8_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 4.820e-24
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 2 
Query:  164 MLTGVPPFEIALPSQDRRCEMVAVEERLGRLLSAWGVSLSSDAVCLIQSCLLSAPGRRPSLETLLKHPWMNA 379
            MLTGVPPFE+ALPSQD+RC++VAVEERL  LLSAWG+SLS +A  LIQSCL  +P  RPS+E LL+HPWM A
Sbjct:  311 MLTGVPPFEMALPSQDQRCQIVAVEERLVDLLSAWGISLSPEAAGLIQSCLRHSPAERPSVENLLRHPWMKA 382
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BLAST of mRNA_L-elsbetiae_contig11368.1201.1 vs. uniprot
Match: D8LLV2_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV2_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 6.680e-19
Identity = 47/72 (65.28%), Postives = 52/72 (72.22%), Query Frame = 2 
Query:  164 MLTGVPPFEIALPSQDRRCEMVAVEERLGRLLSAWGVSLSSDAVCLIQSCLLSAPGRRPSLETLLKHPWMNA 379
            MLTGV PFE+ALPS D R   VAV+E L  LLS W +SLS +A  LIQSCLL AP RRPSLE L  H W+NA
Sbjct:  304 MLTGVAPFEVALPSHDERLHTVAVKENLAELLSTWNISLSPEATDLIQSCLLFAPERRPSLEALANHDWLNA 375
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BLAST of mRNA_L-elsbetiae_contig11368.1201.1 vs. uniprot
Match: A0A6H5JKI7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.350e-18
Identity = 46/72 (63.89%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  164 MLTGVPPFEIALPSQDRRCEMVAVEERLGRLLSAWGVSLSSDAVCLIQSCLLSAPGRRPSLETLLKHPWMNA 379
            MLTGV PFE+ALP  D R   VAV E L  LLS W +SLS +A  LIQSCLL AP RRPSLE L  H W NA
Sbjct:  166 MLTGVAPFEVALPFHDERLHTVAVNENLAELLSTWNISLSPEATDLIQSCLLFAPERRPSLEALANHDWFNA 237
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BLAST of mRNA_L-elsbetiae_contig11368.1201.1 vs. uniprot
Match: A0A6H5K2Q5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2Q5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.250e-17
Identity = 47/71 (66.20%), Postives = 53/71 (74.65%), Query Frame = 2 
Query:  161 SMLTGVPPFEIALPSQDRRCEMVAVEERLGRLLSAWGVSLSSDAVCLIQSCLLSAPGRRPSLETLLKHPWM 373
            +MLTGV PFE+ALPSQD R   VAV ERL  LLSAW + LS +A  LIQSCLL AP RRPSLE L+ H W+
Sbjct:  407 AMLTGVAPFELALPSQDMRFHTVAVRERLTELLSAWNMPLSPEATDLIQSCLLLAPERRPSLEELVDHDWV 477
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BLAST of mRNA_L-elsbetiae_contig11368.1201.1 vs. uniprot
Match: D7G0N3_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 6.380e-13
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:  167 LTGVPPFEIALPSQDRRCEMVAVEERLGRLLSAWGVSLSSDAVCLIQSCLLSAPGRRPSLETLLKHPWM 373
            L G+PPF I +P++D RC ++AVE RL  ++  WG+++S +AV LIQ+CLL  P  R ++  L  HPW+
Sbjct:  273 LAGIPPFHIPIPARDHRCHVIAVERRLLEVVRRWGLTMSDEAVSLIQACLLFDPSERSTVRDLQNHPWL 341
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11368.1201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FTS8_ECTSI4.820e-2472.22SOS2 (SALT OVERLY SENSITIVE 2) kinase n=2 Tax=Ecto... [more]
D8LLV2_ECTSI6.680e-1965.28Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5JKI7_9PHAE1.350e-1863.89Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K2Q5_9PHAE2.250e-1766.20Protein kinase domain-containing protein n=2 Tax=E... [more]
D7G0N3_ECTSI6.380e-1346.38Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11368contigL-elsbetiae_contig11368:2968..4626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue7.3e-23
Seed eggNOG ortholog2880.D7FTS8
KEGG rclassRC01978
KEGG koko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0583@1,KOG0583@2759
EC2.8.1.8
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size1130
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11368.1201.1prot_L-elsbetiae_contig11368.1201.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11368 3716..4487 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.640147-UTR-L-elsbetiae_contig11368:2967..37151622815345.640147-UTR-L-elsbetiae_contig11368:2967..3715Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11368 2968..3715 -
1691682851.7995188-UTR-L-elsbetiae_contig11368:2967..37151691682851.7995188-UTR-L-elsbetiae_contig11368:2967..3715Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11368 2968..3715 -
1622815345.675902-UTR-L-elsbetiae_contig11368:4487..46261622815345.675902-UTR-L-elsbetiae_contig11368:4487..4626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11368 4488..4626 -
1691682851.8308938-UTR-L-elsbetiae_contig11368:4487..46261691682851.8308938-UTR-L-elsbetiae_contig11368:4487..4626Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11368 4488..4626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.6525989-CDS-L-elsbetiae_contig11368:3715..38081622815345.6525989-CDS-L-elsbetiae_contig11368:3715..3808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11368 3716..3808 -
1691682851.814175-CDS-L-elsbetiae_contig11368:3715..38081691682851.814175-CDS-L-elsbetiae_contig11368:3715..3808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11368 3716..3808 -
1622815345.663341-CDS-L-elsbetiae_contig11368:4337..44871622815345.663341-CDS-L-elsbetiae_contig11368:4337..4487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11368 4338..4487 -
1691682851.8226058-CDS-L-elsbetiae_contig11368:4337..44871691682851.8226058-CDS-L-elsbetiae_contig11368:4337..4487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11368 4338..4487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11368.1201.1

>prot_L-elsbetiae_contig11368.1201.1 ID=prot_L-elsbetiae_contig11368.1201.1|Name=mRNA_L-elsbetiae_contig11368.1201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
MHVASMCSMLTGVPPFEIALPSQDRRCEMVAVEERLGRLLSAWGVSLSSD
AVCLIQSCLLSAPGRRPSLETLLKHPWMNA*
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mRNA from alignment at L-elsbetiae_contig11368:2968..4626-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11368.1201.1 ID=mRNA_L-elsbetiae_contig11368.1201.1|Name=mRNA_L-elsbetiae_contig11368.1201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1659bp|location=Sequence derived from alignment at L-elsbetiae_contig11368:2968..4626- (Laminarionema elsbetiae ELsaHSoW15)
GCACGCCCTGGAGGGTTAGGTCTTTGTGTTGTCGTAGACGTTTCGGCGCT
GTAAACTCGCGACACCTGACCGACGGTGTGCGCGAACGGTAGCGTGACGA
TTCGAATCGTCGCCACGAACCGAATCCCCACCCCCACCTATGCACGTCGC
CTCAATGTGCAGCATGCTCACAGGCGTTCCTCCCTTTGAGATCGCGCTCC
CCTCTCAAGACCGGCGATGTGAGATGGTCGCGGTGGAAGAGAGACTCGGT
CGTCTCCTGTCGGCGTGGGGTGTTTCCTTGTCATCAGATGTGAGTGGCGT
ATGTAGGGTGTCTGGAAACGGCGTGCATCTGACTTGCTCCAAGTCTTCTA
AAAATAAACAAAGAATCAAAGATGGAACCTAACCCACACTAGAGCAAAGA
CTCGGTATGGGGTTCAAACGGTATTCCATACAGAGACGTAATATTTGGCG
AAGCGAGCAGAAAAACAACCTAAATATCAGAAGAGTTCAACATCTCCCCT
GCAAAGATTCAAGATTTGCGAGGTCGGCCAACAATTATTCCGGCGGGTAG
AGCCCACCGTGATGCCTTAATGTTGTCACCTACTTTAAAATAGGAACACA
TCGCATTGTTGAACTAAATCAAAATGCTGGTTTAATATATGTGGGTTACT
GCTTCAGAGGCTTCTGTTCATCTGTTTTTTTATTAGTGCACCGCCTCGGC
TTCCTTGCAGACATTTGGTGTGTTGATGAATCATCGCTCGTGCTAACTAA
ATGGCTTGTCCCACCTTTCCCTCCGCTCGCTATACCATTGCCTCGAACTC
CTGCCCCTGCACACGTAGGCGGTTTGTTTGATCCAGTCCTGCCTGCTGTC
TGCGCCAGGTAGACGCCCCAGCCTCGAGACGCTTCTGAAACACCCTTGGA
TGAACGCTTGAGATATATCGGCTTGCTGGTGGCATGGTGTAAATATATAG
AAAAAAGTAGAAGTAGACTAGTTATATGTATAGTTTATATACTTCATATG
TGTTTTCCCTGGTCGTTCCCGTCCCCTCTGTGGTTAAAACCGGCTGACCT
GGATGAAGGGCTGGAAAAAGGCCGGCGCCTTGTCTTTTTCTTCTTCGACA
TACGTATACATATGTAGGAACCGATTGGGCGTTATGTGACGTGGTATGTA
GAAAAGCAGTCCATGGAATCAATCGCCGCTCGCCCGCAATGTACAGACAG
ACTTGTTTTTTTATTTGGTCGCGAAGCGAAGGCAAGGCCGTATATGTTGG
TGTGAGGGCGGAGCTTTAGATGTGTGTGTACAGAATCATCTTGAGTTTGT
AGAATGTGGACCTGTTAGGCCACCAATTCCAATGCCGGTATTGTCACGAT
TTTGTTGGGCCGTGTCTGTGTGCGCGGTCTGCGTTTATGTTGGATGAAAG
TCTCGGTCGTGAGTTTTGCGAAGTTGTGGGTGGAAATGAGTTTTGAGAAG
CCGCTGAACCATCAAGAAACTGGGGCTGAAGACAGTCAAACGGATCCCGA
CACCCATGGAAATTGCGGTGTTCGTATTGTACTGATTTGAAAGAGGAAGA
AATCAGAACCAGCAGTCTATTCCCCGCAACTAATAGCTTCAACTATTTGT
ACGTGGTGCACGCTTAAATATATACTCCCTCTGACCGGCAATATAAGGCC
AGTTCGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11368:2968..4626-

>mRNA_L-elsbetiae_contig11368.1201.1 ID=mRNA_L-elsbetiae_contig11368.1201.1|Name=mRNA_L-elsbetiae_contig11368.1201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig11368:2968..4626- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGTCGCCTCAATGTGCAGCATGCTCACAGGCGTTCCTCCCTTTGA
GATCGCGCTCCCCTCTCAAGACCGGCGATGTGAGATGGTCGCGGTGGAAG
AGAGACTCGGTCGTCTCCTGTCGGCGTGGGGTGTTTCCTTGTCATCAGAT
ATGCACGTCGCCTCAATGTGCAGCATGCTCACAGGCGTTCCTCCCTTTGA
GATCGCGCTCCCCTCTCAAGACCGGCGATGTGAGATGGTCGCGGTGGAAG
AGAGACTCGGTCGTCTCCTGTCGGCGTGGGGTGTTTCCTTGTCATCAGAT
GCGGTTTGTTTGATCCAGTCCTGCCTGCTGTCTGCGCCAGGTAGACGCCC
CAGCCTCGAGACGCTTCTGAAACACCCTTGGATGAACGCTTGAGCGGTTT
GTTTGATCCAGTCCTGCCTGCTGTCTGCGCCAGGTAGACGCCCCAGCCTC
GAGACGCTTCTGAAACACCCTTGGATGAACGCTTGA
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