mRNA_L-elsbetiae_contig11367.1200.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11367.1200.1
Unique NamemRNA_L-elsbetiae_contig11367.1200.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11367.1200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11367contigL-elsbetiae_contig11367:1111..2430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_002030.1
Exons2
Model size1296
Cds size1128
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11367.1200.1prot_L-elsbetiae_contig11367.1200.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11367 1279..2430 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.2339234-UTR-L-elsbetiae_contig11367:1110..12781622815345.2339234-UTR-L-elsbetiae_contig11367:1110..1278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11367 1111..1278 -
1691682851.7444804-UTR-L-elsbetiae_contig11367:1110..12781691682851.7444804-UTR-L-elsbetiae_contig11367:1110..1278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11367 1111..1278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.2452517-CDS-L-elsbetiae_contig11367:1278..16791622815345.2452517-CDS-L-elsbetiae_contig11367:1278..1679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11367 1279..1679 -
1691682851.7570634-CDS-L-elsbetiae_contig11367:1278..16791691682851.7570634-CDS-L-elsbetiae_contig11367:1278..1679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11367 1279..1679 -
1622815345.2594502-CDS-L-elsbetiae_contig11367:1703..24301622815345.2594502-CDS-L-elsbetiae_contig11367:1703..2430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11367 1704..2430 -
1691682851.768055-CDS-L-elsbetiae_contig11367:1703..24301691682851.768055-CDS-L-elsbetiae_contig11367:1703..2430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11367 1704..2430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11367.1200.1

>prot_L-elsbetiae_contig11367.1200.1 ID=prot_L-elsbetiae_contig11367.1200.1|Name=mRNA_L-elsbetiae_contig11367.1200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=376bp
QDDGRGRPSGGGGGGKDEKEKVGEPTELPVGLGCGEQIAPHNRVESDQPT
AAGTAAITECSTDSANTAVAAAGEFGVTTQQVRWRGQSVALAGPVVITLR
GSSLRKLRPRRSRCHKAGTDTKALAGDSEYDSSSSDEGSDARSAGARGRG
QPKSAQHDVAQGRDRDGKRGPTNGGSSKRGSSAQRDSIRSGPSCGTEAGE
EHHADRRNSSSRRRHEEALPLDRTGSSALVPPRGGQGQGQGQGNGNGNGS
CRRSLPRPAVFLLEPYAGPPVAACSRAWPAGTRVMAGSVEGCRRRNDRAG
HRRSGGPHASRRARGKSKSAGGEAKKRSAERTRLGSSSSPNPGGTTSSGS
GSDSATSAGEEKQEGRPRAESKSYQ*
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mRNA from alignment at L-elsbetiae_contig11367:1111..2430-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11367.1200.1 ID=mRNA_L-elsbetiae_contig11367.1200.1|Name=mRNA_L-elsbetiae_contig11367.1200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig11367:1111..2430- (Laminarionema elsbetiae ELsaHSoW15)
CAAGACGATGGGAGAGGCAGGCCGAGTGGCGGTGGAGGGGGGGGGAAAGA
CGAGAAGGAAAAGGTTGGCGAACCTACGGAATTGCCAGTTGGGCTTGGTT
GTGGTGAGCAAATCGCTCCCCACAACCGAGTCGAATCCGACCAGCCAACA
GCCGCTGGCACCGCCGCCATCACGGAATGCTCGACGGACTCTGCGAATAC
AGCAGTAGCAGCGGCCGGAGAATTTGGTGTCACTACGCAGCAGGTACGCT
GGCGGGGGCAATCCGTCGCCTTGGCCGGACCCGTCGTGATCACGCTGAGA
GGGTCAAGTCTCAGGAAACTTCGACCCCGCAGGAGCAGATGTCACAAGGC
TGGCACGGACACGAAAGCGCTCGCCGGGGACTCCGAATACGATTCGTCTT
CTTCGGACGAGGGATCGGACGCCAGGTCGGCGGGGGCGCGAGGAAGAGGA
CAACCCAAATCGGCACAGCATGATGTCGCCCAAGGACGGGACAGAGACGG
GAAGCGAGGACCCACTAACGGCGGCAGCAGCAAGCGCGGGTCGTCAGCTC
AGCGAGATAGCATCCGCTCCGGTCCATCCTGTGGCACGGAAGCCGGAGAG
GAACACCATGCCGATCGGAGGAACTCTTCCTCACGACGTCGACACGAGGA
AGCGCTGCCCTTGGATCGGACTGGTTCGTCCGCGCTGGTGCCTCCCCGTG
GGGGCCAAGGCCAAGGCCAAGGCCAAGGCCAAGGCCAAGGCCAAGGCCAA
GGCAACGGCAACGGCAACGGCAGTTGCCGCCGAAGCCTACCACGCCCGGC
AGTCTTCCTTCTCGAGCCTTACGCTGGCCCACCCGTCGCTGCGTGTTCGC
GCGCGTGGCCTGCCGGGACTAGGGTCATGGCAGGCTCAGTGGAGGGGTGT
CGCCGACGGAACGACCGCGCCGGGCACAGGAGAAGTGGCGGACCACACGC
TTCCCGTCGCGCGAGAGGAAAGTCCAAGAGCGCAGGGGGAGAGGCAAAAA
AACGATCGGCTGAGCGGACAAGACTTGGCTCTAGCAGCAGCCCGAACCCT
GGAGGTACCACGAGCAGCGGCAGCGGCAGTGATAGCGCGACCTCTGCAGG
CGAGGAAAAGCAGGAGGGCCGCCCACGGGCGGAGTCCAAGAGTTACCAAT
AACGGTGGAAAGGACCGAAAGTCGGGCTGGAAGGATTGGCACCCACTGGT
GTGCAGCAGTGAGGGCGTATGTTGGCTTGGTGTTCTCAGCCCAAGAGTAT
CAAAGCTTCACGCGATCGTGTTCTGCACGCGCGTCAACACCGACGGTCGA
AGCAACCCATAGCCAAACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11367:1111..2430-

>mRNA_L-elsbetiae_contig11367.1200.1 ID=mRNA_L-elsbetiae_contig11367.1200.1|Name=mRNA_L-elsbetiae_contig11367.1200.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2256bp|location=Sequence derived from alignment at L-elsbetiae_contig11367:1111..2430- (Laminarionema elsbetiae ELsaHSoW15)
CAAGACGATGGGAGAGGCAGGCCGAGTGGCGGTGGAGGGGGGGGGAAAGA
CGAGAAGGAAAAGGTTGGCGAACCTACGGAATTGCCAGTTGGGCTTGGTT
GTGGTGAGCAAATCGCTCCCCACAACCGAGTCGAATCCGACCAGCCAACA
GCCGCTGGCACCGCCGCCATCACGGAATGCTCGACGGACTCTGCGAATAC
AGCAGTAGCAGCGGCCGGAGAATTTGGTGTCACTACGCAGCAGGTACGCT
GGCGGGGGCAATCCGTCGCCTTGGCCGGACCCGTCGTGATCACGCTGAGA
GGGTCAAGTCTCAGGAAACTTCGACCCCGCAGGAGCAGATGTCACAAGGC
TGGCACGGACACGAAAGCGCTCGCCGGGGACTCCGAATACGATTCGTCTT
CTTCGGACGAGGGATCGGACGCCAGGTCGGCGGGGGCGCGAGGAAGAGGA
CAACCCAAATCGGCACAGCATGATGTCGCCCAAGGACGGGACAGAGACGG
GAAGCGAGGACCCACTAACGGCGGCAGCAGCAAGCGCGGGTCGTCAGCTC
AGCGAGATAGCATCCGCTCCGGTCCATCCTGTGGCACGGAAGCCGGAGAG
GAACACCATGCCGATCGGAGGAACTCTTCCTCACGACGTCGACACGAGGA
AGCGCTGCCCTTGGATCGGACTGGTTCGTCCGCGCTGGTGCCTCCCCGTG
GGGGCCAAGGCCAAGGCCAAGGCCAAGCAAGACGATGGGAGAGGCAGGCC
GAGTGGCGGTGGAGGGGGGGGGAAAGACGAGAAGGAAAAGGTTGGCGAAC
CTACGGAATTGCCAGTTGGGCTTGGTTGTGGTGAGCAAATCGCTCCCCAC
AACCGAGTCGAATCCGACCAGCCAACAGCCGCTGGCACCGCCGCCATCAC
GGAATGCTCGACGGACTCTGCGAATACAGCAGTAGCAGCGGCCGGAGAAT
TTGGTGTCACTACGCAGCAGGTACGCTGGCGGGGGCAATCCGTCGCCTTG
GCCGGACCCGTCGTGATCACGCTGAGAGGGTCAAGTCTCAGGAAACTTCG
ACCCCGCAGGAGCAGATGTCACAAGGCTGGCACGGACACGAAAGCGCTCG
CCGGGGACTCCGAATACGATTCGTCTTCTTCGGACGAGGGATCGGACGCC
AGGTCGGCGGGGGCGCGAGGAAGAGGACAACCCAAATCGGCACAGCATGA
TGTCGCCCAAGGACGGGACAGAGACGGGAAGCGAGGACCCACTAACGGCG
GCAGCAGCAAGCGCGGGTCGTCAGCTCAGCGAGATAGCATCCGCTCCGGT
CCATCCTGTGGCACGGAAGCCGGAGAGGAACACCATGCCGATCGGAGGAA
CTCTTCCTCACGACGTCGACACGAGGAAGCGCTGCCCTTGGATCGGACTG
GTTCGTCCGCGCTGGTGCCTCCCCGTGGGGGCCAAGGCCAAGGCCAAGGC
CAAGGCAACGGCAACGGCAACGGCAGTTGCCGCCGAAGCCTACCACGCCC
GGCAGTCTTCCTTCTCGAGCCTTACGCTGGCCCACCCGTCGCTGCGTGTT
CGCGCGCGTGGCCTGCCGGGACTAGGGTCATGGCAGGCTCAGTGGAGGGG
TGTCGCCGACGGAACGACCGCGCCGGGCACAGGAGAAGTGGCGGACCACA
CGCTTCCCGTCGCGCGAGAGGAAAGTCCAAGAGCGCAGGGGGAGAGGCAA
AAAAACGATCGGCTGAGCGGACAAGACTTGGCTCTAGCAGCAGCCCGAAC
CCTGGAGGTACCACGAGCAGCGGCAGCGGCAGTGATAGCGCGACCTCTGC
AGGCGAGGAAAAGCAGGAGGGCCGCCCACGGGCGGAGTCCAAGAGTTACC
AATAAGCAACGGCAACGGCAACGGCAGTTGCCGCCGAAGCCTACCACGCC
CGGCAGTCTTCCTTCTCGAGCCTTACGCTGGCCCACCCGTCGCTGCGTGT
TCGCGCGCGTGGCCTGCCGGGACTAGGGTCATGGCAGGCTCAGTGGAGGG
GTGTCGCCGACGGAACGACCGCGCCGGGCACAGGAGAAGTGGCGGACCAC
ACGCTTCCCGTCGCGCGAGAGGAAAGTCCAAGAGCGCAGGGGGAGAGGCA
AAAAAACGATCGGCTGAGCGGACAAGACTTGGCTCTAGCAGCAGCCCGAA
CCCTGGAGGTACCACGAGCAGCGGCAGCGGCAGTGATAGCGCGACCTCTG
CAGGCGAGGAAAAGCAGGAGGGCCGCCCACGGGCGGAGTCCAAGAGTTAC
CAATAA
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