mRNA_L-elsbetiae_contig11361.1198.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11361.1198.1
Unique NamemRNA_L-elsbetiae_contig11361.1198.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11361.1198.1 vs. uniprot
Match: A0A6H5K9W0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.690e-9
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 3 
Query:    6 GLVSGDEEYTICMEEAASFQVASQLRALFVTLVLDGVQHQNYGQEFQANLVEDF 167
            GLV+G EEY ICMEEA +F++ SQLR LFVTL+LDG        +++ +L+EDF
Sbjct:  134 GLVTGQEEYFICMEEAITFEMPSQLRGLFVTLILDGGPAPKLWNDYKDHLIEDF 187
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BLAST of mRNA_L-elsbetiae_contig11361.1198.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.520e-7
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 2 
Query:  281 LKNKAQRMEDAFDINTCKQYAETHERNLATERHHVYKSIIDSVDNGVGKPYMIDAPAGPGKTYTEKCIC 487
            L  +  R +  FD      + + H  NL  E+ HVY +++ SV +G    +MIDAPAG GKTYTE  +C
Sbjct:  265 LDTEYMRFKHMFDPAQMSAFVDEHLANLTHEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTESILC 333
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BLAST of mRNA_L-elsbetiae_contig11361.1198.1 vs. uniprot
Match: A0A6H5L0I5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 4.620e-7
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 2 
Query:  299 RMEDAFDINTCKQYAETHERNLATERHHVYKSIIDSVDNGVGKPYMIDAPAGPGKTYTEKCIC 487
            R +  FD      + + H  NL  E+ HVY +++ SV +G    +MIDAPAG GKTYTE  +C
Sbjct:  434 RFKHMFDPAQMSAFVDEHLANLTHEQRHVYDTVVSSVTSGASNLFMIDAPAGTGKTYTESILC 496
[Close]
BLAST of mRNA_L-elsbetiae_contig11361.1198.1 vs. uniprot
Match: A0A6H5JVN5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN5_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.850e-5
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 2 
Query:  311 AFDINTCKQYAETHERNLATERHHVYKSIIDSVDNGVGKPYMIDAPAGPGKTYTEKCI 484
            AFD +    YA+  E  L + +  VY +++D+V N   +P+MIDAPAG GK++TEK I
Sbjct:    4 AFDPSAQTAYADRFEPGLTSGQRVVYNAVVDAVRNNQPQPFMIDAPAGTGKSHTEKVI 61
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11361.1198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K9W0_9PHAE1.690e-955.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JZJ6_9PHAE2.520e-740.58ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0I5_9PHAE4.620e-742.86ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JVN5_9PHAE4.850e-544.83ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11361contigL-elsbetiae_contig11361:4260..4878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size619
Cds size318
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.193845-UTR-L-elsbetiae_contig11361:4259..45601622815345.193845-UTR-L-elsbetiae_contig11361:4259..4560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11361 4260..4560 +
1691682851.725073-UTR-L-elsbetiae_contig11361:4259..45601691682851.725073-UTR-L-elsbetiae_contig11361:4259..4560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11361 4260..4560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.204959-CDS-L-elsbetiae_contig11361:4560..48781622815345.204959-CDS-L-elsbetiae_contig11361:4560..4878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11361 4561..4878 +
1691682851.7334013-CDS-L-elsbetiae_contig11361:4560..48781691682851.7334013-CDS-L-elsbetiae_contig11361:4560..4878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11361 4561..4878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11361.1198.1prot_L-elsbetiae_contig11361.1198.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11361 4561..4878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11361.1198.1

>prot_L-elsbetiae_contig11361.1198.1 ID=prot_L-elsbetiae_contig11361.1198.1|Name=mRNA_L-elsbetiae_contig11361.1198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MEDAFDINTCKQYAETHERNLATERHHVYKSIIDSVDNGVGKPYMIDAPA
GPGKTYTEKCICLWTRHSLQTEASQITLLIQTATTSSPRTRTRVDRKADT
HSPTT*
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mRNA from alignment at L-elsbetiae_contig11361:4260..4878+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11361.1198.1 ID=mRNA_L-elsbetiae_contig11361.1198.1|Name=mRNA_L-elsbetiae_contig11361.1198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=619bp|location=Sequence derived from alignment at L-elsbetiae_contig11361:4260..4878+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCAGGTTTAGTATCTGGTGATGAGGAATACACAATTTGCATGGAAGAA
GCAGCCTCTTTCCAGGTAGCAAGCCAGCTTCGTGCCCTGTTCGTCACGCT
TGTTTTGGACGGGGTTCAGCACCAAAACTATGGTCAAGAGTTTCAAGCCA
ATTTGGTTGAGGATTTTAACCTCCATCATGACGACTGAAGAATCCATCCA
GCAGGCTCTAAGAGAAATCGACTTAAAACTTCAGTTACACGGGAAAACTA
CCGAGCAGCTTGACCTCCTGCAGCCCAACACTCAAAAACAAAGCTCAAAG
AATGGAAGATGCATTTGACATCAACACGTGCAAGCAATACGCTGAAACTC
ACGAACGGAACCTCGCTACAGAACGGCATCATGTATACAAATCCATCATC
GACTCAGTCGACAACGGAGTAGGAAAACCTTACATGATAGACGCACCGGC
TGGCCCAGGGAAAACATACACAGAAAAGTGCATATGCCTCTGGACCCGCC
ATTCCCTGCAGACTGAAGCATCTCAAATTACTTTACTCATACAAACGGCA
ACCACCTCAAGCCCACGCACACGCACACGCGTGGACAGAAAGGCAGACAC
GCATTCACCTACTACATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11361:4260..4878+

>mRNA_L-elsbetiae_contig11361.1198.1 ID=mRNA_L-elsbetiae_contig11361.1198.1|Name=mRNA_L-elsbetiae_contig11361.1198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig11361:4260..4878+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGATGCATTTGACATCAACACGTGCAAGCAATACGCTGAAACTCA
CGAACGGAACCTCGCTACAGAACGGCATCATGTATACAAATCCATCATCG
ACTCAGTCGACAACGGAGTAGGAAAACCTTACATGATAGACGCACCGGCT
GGCCCAGGGAAAACATACACAGAAAAGTGCATATGCCTCTGGACCCGCCA
TTCCCTGCAGACTGAAGCATCTCAAATTACTTTACTCATACAAACGGCAA
CCACCTCAAGCCCACGCACACGCACACGCGTGGACAGAAAGGCAGACACG
CATTCACCTACTACATGAATGGAAGATGCATTTGACATCAACACGTGCAA
GCAATACGCTGAAACTCACGAACGGAACCTCGCTACAGAACGGCATCATG
TATACAAATCCATCATCGACTCAGTCGACAACGGAGTAGGAAAACCTTAC
ATGATAGACGCACCGGCTGGCCCAGGGAAAACATACACAGAAAAGTGCAT
ATGCCTCTGGACCCGCCATTCCCTGCAGACTGAAGCATCTCAAATTACTT
TACTCATACAAACGGCAACCACCTCAAGCCCACGCACACGCACACGCGTG
GACAGAAAGGCAGACACGCATTCACCTACTACATGA
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