mRNA_L-elsbetiae_contig11360.1196.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11360.1196.1
Unique NamemRNA_L-elsbetiae_contig11360.1196.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11360.1196.1 vs. uniprot
Match: D7FQB8_ECTSI (Folate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB8_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 3.020e-41
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 1
Query:    1 GLGPSLLGNAVAWGGFFYCYESIKVRVGVQVCCFASTPDGIELGPVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDRNAKASGVRPYSGLI 276
            GLGP+LLGNAVAWGGFFYCYE IK  +  +V      P   +LG VHHLGAGYVAGAMMVLATNPVWMIKTRMQLQD+ AK+ GVRPYSGL+
Sbjct:  101 GLGPALLGNAVAWGGFFYCYEKIKTAIRARV------PQEADLGAVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDKKAKSGGVRPYSGLM 186          
BLAST of mRNA_L-elsbetiae_contig11360.1196.1 vs. uniprot
Match: A0A836CHG8_9STRA (Folate transporter (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.070e-21
Identity = 47/95 (49.47%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 GLGPSLLGNAVAWGGFFYCYESIKVRVGVQVCCFASTPDGIELGPVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDRN----AKASGVRPYSGL 273
            GLGP++LG+ V+WGG+FY YE  K  +           D  +LGPVHHL AG  AG  +VL TNP+W++KTRMQLQ         A+G RPY+GL
Sbjct:   59 GLGPAVLGSGVSWGGYFYLYEWAKTSM-------RRFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGL 146          
BLAST of mRNA_L-elsbetiae_contig11360.1196.1 vs. uniprot
Match: A0A7S4D5I4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5I4_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 3.170e-20
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 GLGPSLLGNAVAWGGFFYCYESIKVRVGVQVCCFASTPDGIELGPVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDRNAKASGVRPYSGLI 276
            G+GP+LLG+ V+WGG+FYCYE+ K R       +        LG  HHL A   AGA++VL TNP+W+IKTR+QLQ R   A     Y+G +
Sbjct:  113 GMGPALLGSGVSWGGYFYCYENAKKR-------YRGGGGAQRLGAGHHLLAAAEAGALLVLLTNPIWLIKTRLQLQVREGGARAGHHYAGPL 197          
BLAST of mRNA_L-elsbetiae_contig11360.1196.1 vs. uniprot
Match: A0A7S2XN66_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XN66_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.230e-16
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 GLGPSLLGNAVAWGGFFYCYESIKVRVGVQVCCFASTPDGIE--LGPVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDRNAKA-------SGVRPYSGL 273
            GL P+L+G+A +WGG+F+ YE +K  + + +   AS  D  E  LG + + GA   AGA+MVL TNPVW+IKTRMQLQ +N          S  RPY+ +
Sbjct:   75 GLAPALIGSAASWGGYFFLYEGMKKEM-LHLKHEASPHDETEHKLGALENFGAACSAGAVMVLLTNPVWLIKTRMQLQMKNVMKERERDGLSMKRPYNNM 173          
BLAST of mRNA_L-elsbetiae_contig11360.1196.1 vs. uniprot
Match: A0A7S2R9Z5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9Z5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.210e-15
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 GLGPSLLGNAVAWGGFFYCYESIKVRVGVQVCCFASTPDGIELGPVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDRNAKAS 249
            GL  +L G+ ++WGG+F+ YE  K R       +++T       P+HHL A   AG +MV  TNP+W++KTRMQLQ R A+ +
Sbjct:    8 GLPAALYGSGISWGGYFFFYEIAKER-------WSTTGGPSTQNPLHHLAAATEAGVIMVFLTNPIWLVKTRMQLQKRVAQTA 83          
BLAST of mRNA_L-elsbetiae_contig11360.1196.1 vs. uniprot
Match: A0A7S2D787_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D787_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.660e-15
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 GLGPSLLGNAVAWGGFFYCYESIKVRVGVQVCCFASTPDGIELGPVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDRNAKASGVRPYSGL 273
            GL   + G+A+AWGG+F+ YE  K+R G       S+ +G  L P +HL A   +GA++VL TNP+W++KTRMQLQ + A     R Y  +
Sbjct:   31 GLSAGMYGSAIAWGGYFWLYEHAKIRWGRFS---ESSSEG--LAPGYHLLAAAESGAILVLLTNPIWLVKTRMQLQQQVAGVGNSRVYRSV 116          
BLAST of mRNA_L-elsbetiae_contig11360.1196.1 vs. uniprot
Match: A0A2P6NXC1_9EUKA (B30.2/SPRY domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXC1_9EUKA)

HSP 1 Score: 78.6 bits (192), Expect = 6.280e-15
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 GLGPSLLGNAVAWGGFFYCYESIKVRVGVQVCCFASTPDGIELGPVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDRNA---KASGVRPYSGLIGVSH 288
            GL P+L+G + AWG +F+ Y   K ++       AS+   ++L P  HL AG+ AG    + TNP+W++KTR+QLQ ++    K SGV    GL GV+H
Sbjct:  939 GLTPNLIGASSAWGLYFWAYTLAKDQMISSQKSDASSSGTVQLSPTQHLLAGFQAGTFTAIVTNPIWVVKTRIQLQQKSGNHGKYSGVT-VPGLFGVTH 1036          
BLAST of mRNA_L-elsbetiae_contig11360.1196.1 vs. uniprot
Match: A0A6A7G9W9_9CRUS (Mitochondrial folate transporter/carrier n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G9W9_9CRUS)

HSP 1 Score: 76.3 bits (186), Expect = 2.330e-14
Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    1 GLGPSLLGNAVAWGGFFYCYESIKVRVGVQVCCFASTPDGIELGPVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDRNAKASGVRPYSGLI 276
            G+ P+L+G+ VAWG +F  Y ++K+++   +        G EL   HHL AG ++G   V+ TNP+WM+KTR+QLQ +   ++ VR Y+G+ 
Sbjct:   91 GVLPNLVGSGVAWGTYFLIYSNLKIQIRKNLTA------GKELSSRHHLLAGVLSGMGTVIITNPIWMVKTRLQLQSKFYSSANVR-YNGMF 175          
BLAST of mRNA_L-elsbetiae_contig11360.1196.1 vs. uniprot
Match: A0A5A8DY18_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DY18_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 3.620e-14
Identity = 35/94 (37.23%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 GLGPSLLGNAVAWGGFFYCYESIKVRVGVQVCCFASTPDG--IELGPVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDRNAKASGVRPYSGLI 276
            G+ P + G+ ++WG +F+ YE +K +  V     AS+ DG   +LGP  H+     +G   V+ TNPVW++KTR+QLQ          PYSG++
Sbjct:   71 GVVPGMAGSGLSWGLYFFFYERLKAKARVWA---ASSADGDSAKLGPAAHMACAMASGCATVMFTNPVWLVKTRLQLQLAAHSPGSPAPYSGMV 161          
BLAST of mRNA_L-elsbetiae_contig11360.1196.1 vs. uniprot
Match: A0A3P3YKX1_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YKX1_PLABS)

HSP 1 Score: 75.1 bits (183), Expect = 7.850e-14
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 GLGPSLLGNAVAWGGFFYCYESIKVRVGVQVCCFASTPDGIELGPVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDRNAKASGVRPYSGLI 276
            GL P+L+G+ VAWG +F  Y   K R+ V+       PD   LGP+HHL +  VAG      TNP+WM+KTR+QLQ R+  A+    Y+G++
Sbjct:  133 GLWPNLVGSGVAWGAYFGFYNIAK-RLWVE----HRGPDQ-PLGPLHHLSSAAVAGVATCFLTNPIWMVKTRLQLQFRSGNANS-HDYTGMV 217          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11360.1196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB8_ECTSI3.020e-4173.91Folate transporter n=1 Tax=Ectocarpus siliculosus ... [more]
A0A836CHG8_9STRA1.070e-2149.47Folate transporter (Fragment) n=1 Tax=Tribonema mi... [more]
A0A7S4D5I4_HETAK3.170e-2046.74Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XN66_9STRA2.230e-1645.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2R9Z5_9STRA3.210e-1542.17Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2D787_9STRA3.660e-1542.86Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A2P6NXC1_9EUKA6.280e-1540.40B30.2/SPRY domain-containing protein n=1 Tax=Plano... [more]
A0A6A7G9W9_9CRUS2.330e-1439.13Mitochondrial folate transporter/carrier n=1 Tax=H... [more]
A0A5A8DY18_CAFRO3.620e-1437.23Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A3P3YKX1_PLABS7.850e-1443.48Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11360contigL-elsbetiae_contig11360:864..1472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue2.1e-32
Seed eggNOG ortholog2880.D7FQB8
Preferred nameSLC25A32
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG koko:K00276,ko:K02935,ko:K15115
KEGG TC2.A.29.10.1,2.A.29.10.2,2.A.29.10.3,2.A.29.10.5
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,ko03010,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006082,GO:0006520,GO:0006544,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006766,GO:0006767,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0006862,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008517,GO:0009069,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0015075,GO:0015215,GO:0015230,GO:0015238,GO:0015318,GO:0015605,GO:0015711,GO:0015748,GO:0015849,GO:0015883,GO:0015884,GO:0015893,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0017144,GO:0019752,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0034220,GO:0034641,GO:0035350,GO:0035461,GO:0042133,GO:0042221,GO:0042493,GO:0042558,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046483,GO:0046655,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051180,GO:0051181,GO:0051182,GO:0051184,GO:0051186,GO:0051234,GO:0055085,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0071705,GO:0072337,GO:0072349,GO:0090482,GO:0098573,GO:0098656,GO:0098838,GO:1901360,GO:1901564,GO:1901605,GO:1901679,GO:1903825,GO:1904947,GO:1905039,GO:1990542,GO:1990548
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGsKOG0764@1,KOG0764@2759
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-01_006700.1
EC1.4.3.21
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko02000,ko03011
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815345.097637-CDS-L-elsbetiae_contig11360:863..9731622815345.097637-CDS-L-elsbetiae_contig11360:863..973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11360 864..973 +
1691682851.576716-CDS-L-elsbetiae_contig11360:863..9731691682851.576716-CDS-L-elsbetiae_contig11360:863..973Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11360 864..973 +
1622815345.1091473-CDS-L-elsbetiae_contig11360:1294..14721622815345.1091473-CDS-L-elsbetiae_contig11360:1294..1472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11360 1295..1472 +
1691682851.5882573-CDS-L-elsbetiae_contig11360:1294..14721691682851.5882573-CDS-L-elsbetiae_contig11360:1294..1472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11360 1295..1472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11360.1196.1prot_L-elsbetiae_contig11360.1196.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11360 864..1472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11360.1196.1

>prot_L-elsbetiae_contig11360.1196.1 ID=prot_L-elsbetiae_contig11360.1196.1|Name=mRNA_L-elsbetiae_contig11360.1196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
GLGPSLLGNAVAWGGFFYCYESIKVRVGVQVCCFASTPDGIELGPVHHLG
AGYVAGAMMVLATNPVWMIKTRMQLQDRNAKASGVRPYSGLIGVSH
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mRNA from alignment at L-elsbetiae_contig11360:864..1472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11360.1196.1 ID=mRNA_L-elsbetiae_contig11360.1196.1|Name=mRNA_L-elsbetiae_contig11360.1196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=609bp|location=Sequence derived from alignment at L-elsbetiae_contig11360:864..1472+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCTGGGCCCATCGTTGCTCGGGAACGCCGTCGCCTGGGGTGGGTTCTT TTACTGCTACGAGAGTATTAAGGTGCGTGTTGGGGTTCAGGTTTGCTGTT TTGCGTCGACGTTAATTCCGGGCCACTTTTGCAAGAAATAATAGTAGTAG TTGTTCACCTTGCCTTCACCGTACTCGGTGGTTATCATTCAATGTTGTAC CTAACATGCCTTGGAGCTGACCCCACCTGAGCACCCCGCCGGATTTGGCA GGAGATTTTACCAGTGTTTGGTTTTCATAGCTGCGTGAGAAACTAACCTC GTGAACGTAGCCCTCCAACTTGAAATTTGTCTCAGCTAATGTTTTTTTTT CGTAATGGTTTTCTGATGGCCTGACCCCCCTCCTCTGCGTATGTATTACT TGAGCGTGCAGACCGCCATCCGCGCGCGAAGACCAGACGGGATCGAGCTG GGGCCCGTGCACCACCTCGGGGCGGGGTACGTCGCGGGGGCGATGATGGT GCTCGCCACCAACCCTGTCTGGATGATCAAGACGAGGATGCAGCTGCAGG ACAGAAACGCCAAAGCCAGCGGCGTTCGCCCGTACTCCGGGTTGATAGGT GTGTCTCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11360:864..1472+

>mRNA_L-elsbetiae_contig11360.1196.1 ID=mRNA_L-elsbetiae_contig11360.1196.1|Name=mRNA_L-elsbetiae_contig11360.1196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig11360:864..1472+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCTGGGCCCATCGTTGCTCGGGAACGCCGTCGCCTGGGGTGGGTTCTT
TTACTGCTACGAGAGTATTAAGGTGCGTGTTGGGGTTCAGGTTTGCTGTT
TTGCGTCGACGGTCTGGGCCCATCGTTGCTCGGGAACGCCGTCGCCTGGG
GTGGGTTCTTTTACTGCTACGAGAGTATTAAGGTGCGTGTTGGGGTTCAG
GTTTGCTGTTTTGCGTCGACACCAGACGGGATCGAGCTGGGGCCCGTGCA
CCACCTCGGGGCGGGGTACGTCGCGGGGGCGATGATGGTGCTCGCCACCA
ACCCTGTCTGGATGATCAAGACGAGGATGCAGCTGCAGGACAGAAACGCC
AAAGCCAGCGGCGTTCGCCCGTACTCCGGGTTGATAGGTGTGTCTCACAC
CAGACGGGATCGAGCTGGGGCCCGTGCACCACCTCGGGGCGGGGTACGTC
GCGGGGGCGATGATGGTGCTCGCCACCAACCCTGTCTGGATGATCAAGAC
GAGGATGCAGCTGCAGGACAGAAACGCCAAAGCCAGCGGCGTTCGCCCGT
ACTCCGGGTTGATAGGTGTGTCTCAC
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