mRNA_L-elsbetiae_contig11359.1193.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11359.1193.1
Unique NamemRNA_L-elsbetiae_contig11359.1193.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11359.1193.1 vs. uniprot
Match: D8LFA7_ECTSI (MtN3-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA7_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 2.660e-88
Identity = 146/194 (75.26%), Postives = 161/194 (82.99%), Query Frame = 1 
Query:    1 EVRRSKHVGERSVFPFVCMWCSSALWVIYGFFIWDIVPTVATNLLGLLFSMYYCAVFAWVVEPASRKRSTYNLFAATFLVVCFVVTFCLGSFSPQARLR-SMEDMDAKSTDEIEDDRAQRLLGLAASAATAVQYASPLAEFVKVINRRSTEGMSFALAAVSLLCSSLWLCYGMMLDNAFIYVPNVLGVFFSASQ 579
            EVRRSKHVGERSVFPFVCMW SS LW+IYG FI DIVPTV TNLLGL  S YYCAV+AW VEPASRK STYNLFAATFL +C VVTFCLG+FSP+     SM+D D  STD   D+RAQR LG+AASAATA+QY +PLAE VKVI RRSTEGMS ALA VSL+CS+LW+ YG+ML NAFIYVPNVLGV FS +Q
Sbjct:   26 EVRRSKHVGERSVFPFVCMWASSTLWLIYGLFIGDIVPTVVTNLLGLACSCYYCAVYAWAVEPASRKSSTYNLFAATFLGICVVVTFCLGTFSPRPESWVSMQDAD--STDSGGDERAQRFLGIAASAATAIQYGAPLAELVKVIRRRSTEGMSLALAVVSLVCSTLWMSYGVMLVNAFIYVPNVLGVCFSVTQ 217
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BLAST of mRNA_L-elsbetiae_contig11359.1193.1 vs. uniprot
Match: A0A6H5KGY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY4_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 7.020e-80
Identity = 136/186 (73.12%), Postives = 151/186 (81.18%), Query Frame = 1 
Query:   55 MWCSSALWVIYGFFIWDIVPTVATNLLGLLFSMYYCAVFAWVVEPASRKRSTYNLFAATFLVVCFVVTFCLGSFSPQ-ARLRSMEDMDAKSTDEIEDDRAQRLLGLAASAATAVQYASPLAEFVKVINRRSTEGMSFALAAVSLLCSSLWLCYGMMLDNAFIYVPNVLGVFFSASQCFLFWLFPRR 609
            MW SS LW+IYG FI DIVPTV TNLLGL  S YYCAVFAW VEPASRK STYNLFAA FL +C VVTFCLG+FSP+ A   SM+D +  STD   D+RAQR LG+AASAATA+QY +PLAE VKVI RRSTEGMS ALA VSL+CS+LW+ YG+ML NAFIYVPNVLGV FS +QC LF LFPRR
Sbjct:    1 MWASSTLWLIYGLFIGDIVPTVVTNLLGLACSCYYCAVFAWAVEPASRKSSTYNLFAAAFLGICVVVTFCLGTFSPRSAPWVSMQDTN--STDSGGDERAQRFLGIAASAATAIQYGAPLAELVKVIRRRSTEGMSLALAVVSLVCSTLWMSYGVMLVNAFIYVPNVLGVCFSVTQCLLFCLFPRR 184
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BLAST of mRNA_L-elsbetiae_contig11359.1193.1 vs. uniprot
Match: A0A8K1C2F8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2F8_PYTOL)

HSP 1 Score: 92.8 bits (229), Expect = 1.200e-17
Identity = 62/202 (30.69%), Postives = 97/202 (48.02%), Query Frame = 1 
Query:    1 EVRRSKHVGERSVFPFVCMWCSSALWVIYGFFIWDIVPTVATNLLGLLFSMYYCAVFAWVVEPASRKRSTYNLFAATFLVVCFVVTFCLGSFSPQARLRSMEDMDAKSTDEIEDDRAQRLLGLAASAATAVQYASPLAEFVKVINRRSTEGMSFALAAVSLLCSSLWLCYGMMLDNAFIYVPNVLGVFFSASQCFLFWLFPR 606
            +VR ++  G   + P + M+ +  LW +YGF I    P VATN++GL FS +Y AV+        R R       ATFL +  V  + + S+ P+  +                   Q+ +G  A    AV + SPL    +VI  + T+ + F +     + SSLWL YG+ + +A + +PN+L +   A Q  LF +FPR
Sbjct:   39 QVRINRATGTMLLLPLLSMFGNCVLWTLYGFLIQAYFPMVATNVVGLGFSSFYMAVYYQFTPDRRRVR---RQLLATFLALFVVSMYPVFSYEPRKVV-------------------QQHIGYLAITVCAVMFGSPLVVVKQVIVTKKTDLLPFGMIVAGFINSSLWLTYGLCIQDAIVTLPNLLNLCLGAVQLVLFCVFPR 218
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BLAST of mRNA_L-elsbetiae_contig11359.1193.1 vs. uniprot
Match: A0A813JVL5_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JVL5_POLGL)

HSP 1 Score: 96.3 bits (238), Expect = 3.650e-17
Identity = 66/209 (31.58%), Postives = 96/209 (45.93%), Query Frame = 1 
Query:    4 VRRSKHVGERSVFPFVCMWCSSALWVIYGFFIWDIVPTVATNLLGLLFSMYYCAVFAWVVEPASRKRSTYNLFAATFLVVCFVVTFCLGSFSPQARLRSMEDMDAKSTDEIEDDRAQRLL---GLAASAATAVQYASPLAEFVKVINRRSTEGMSFALAAVSLLCSSLWLCYGMMLDNAFIYVPNVLGVFFSASQCFLFWLFPRRGTIS 621
            +R  K VG  S  PF  M  + A W IYG    D VP VA NL G++  ++    F     P S  R   N++ A  + +  ++     + S      ++  + A     +E   A   L   GL         +ASPLA   +V   RST  +S    A S+ CSSLW CYG++  +AF+++PN +G+  S  Q  LF  F   G+ S
Sbjct: 1008 IRSDKSVGLTSPLPFAAMAFNCATWSIYGAIGRDWVPMVAANLTGVVTGLFALHTFRLYTPPGSASRDASNIYLAVLVSIALLLVISREAISAGHEPGAIVLL-AAGAPAVEPSAAAAALSKLGLLGDLTAVCMFASPLATIKQVCRSRSTASLSLLATAASVCCSSLWGCYGLLQGDAFVWMPNFVGLLVSLFQLLLFPYFASLGSGS 1215
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BLAST of mRNA_L-elsbetiae_contig11359.1193.1 vs. uniprot
Match: A0A087SZL1_STEMI (Sugar transporter SWEET1 (Fragment) n=3 Tax=Stegodyphus TaxID=175340 RepID=A0A087SZL1_STEMI)

HSP 1 Score: 89.7 bits (221), Expect = 7.640e-17
Identity = 59/203 (29.06%), Postives = 97/203 (47.78%), Query Frame = 1 
Query:    1 EVRRSKHVGERSVFPFVCMWCSSALWVIYGFFIWDIVPTVATNLLGLLFSMYYCAVFAWVVEPASRKRSTYNLFAATFLVVCFVVTFCLGSFSPQARLRSMEDMDAKSTDEIEDDRAQRLLGLAASAATAVQYASPLAEFVKVINRRSTEGMSFALAAVSLLCSSLWLCYGMMLDNAFIYVPNVLGVFFSASQCFLFWLFPRR 609
            ++ + K   + S  PF+C   S +LW+ YG  + D    V     G+L  +Y      W       K   Y   A +  V+ F+  +CL +FS +  L                  +Q++ G+AA +A  +  ASPLA    V+  ++ E + FA+   +   ++LWLCYG+++++ F+ VPN LG   S SQ  LF +FP +
Sbjct:   28 KIWKKKSTSDISALPFLCGLVSCSLWLRYGLLVNDSALIVVNTTGGILQILY----IMWYARFTVSKGIFYKQLALSLSVIGFL--YCLTTFSFEGEL------------------SQQISGIAACSAGVIFMASPLATVAHVLRTKTVETLPFAMILSTFAMATLWLCYGILINDKFVQVPNFLGALLSLSQLCLFAVFPNK 206
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BLAST of mRNA_L-elsbetiae_contig11359.1193.1 vs. uniprot
Match: A0A225VV52_9STRA (MtN3-like protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VV52_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.860e-16
Identity = 63/208 (30.29%), Postives = 101/208 (48.56%), Query Frame = 1 
Query:   34 SVFPFVCMWCSSALWVIYGFFIWDIVPTVATNLLGLLFSMYYCAVFAWVVEPASRKRSTYNLFAATFLVVCFVVTFCLGSFSPQARLRSMEDMDAKSTDEIEDDRAQRLLGLAASAATAVQYASPLAEFVKVINRRSTEGMSFALAAVSLLCSSLWLCYGMMLDNAFIYVPNVLGVFFSASQCFLFWLFPRRGTI----SGSKIDRGD 645
            S  P + M  +   W +YG  I D  P VATN++GL+FS++Y  V+ +  EP   K S      AT LV+  +V +                    +++E++++  Q ++G      +AV + SPL    +VI  R+TE +   +     +   LWL YG++L++AF+ VPN   +     Q  LF ++PR GT     S SK  + D
Sbjct:   36 SALPVLSMVGNCVAWGLYGLLIGDYFPLVATNIVGLIFSLFYLIVY-YYYEP--NKCSLRLEILATTLVLVGLVLYPF----------------VAASEEVDENSIQSIVGFVTVGISAVMFGSPLVLVKRVIQERNTELLPLTMIVAGAVNCVLWLVYGLLLNDAFVIVPNAANLLLGVVQLGLFCIYPRGGTYDKVESNSKGKKAD 224
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BLAST of mRNA_L-elsbetiae_contig11359.1193.1 vs. uniprot
Match: S4RLA5_PETMA (Sugar transporter SWEET1 n=3 Tax=Petromyzon marinus TaxID=7757 RepID=S4RLA5_PETMA)

HSP 1 Score: 86.3 bits (212), Expect = 7.580e-16
Identity = 64/191 (33.51%), Postives = 93/191 (48.69%), Query Frame = 1 
Query:   34 SVFPFVCMWCSSALWVIYGFFIWDIVPTVA-TNLLGLLFSMYYCAVFAWVVEPASRKRSTYNLFAATFLVVCFVVTFCLGSFSPQARLRSMEDMDAKSTDEIEDDRAQRLLGLAASAATAVQYASPLAEFVKVINRRSTEGMSFALAAVSLLCSSLWLCYGMMLDNAFIYVPNVLGVFFSASQCFLFWLFP 603
            S+FPFV + C S LW+ YG  + D  PT+   N +G    + +  +F +V  P   KRS Y       L++  V+ +              ED DA          A+  LG+  +  T V Y SPLA   +V+  RSTE ++F L A +L+  + W  YG+ML + FI VPN+LG      Q  LF ++P
Sbjct:   20 SMFPFVSL-CVSTLWLRYGLLLGD--PTIVYVNAVGASIGVLFSIIF-YVNTP--HKRSLYRTMVGPALLLYSVLLYVK---------YLAEDEDA----------ARPHLGMVCTLWTVVNYGSPLATLAEVVRSRSTESLAFPLCAANLVVGTEWFIYGLMLQDTFIQVPNLLGALLGLGQLSLFLVYP 185
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BLAST of mRNA_L-elsbetiae_contig11359.1193.1 vs. uniprot
Match: UPI0014035DE3 (uncharacterized protein LOC116950426 isoform X1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014035DE3)

HSP 1 Score: 89.0 bits (219), Expect = 1.670e-15
Identity = 66/206 (32.04%), Postives = 99/206 (48.06%), Query Frame = 1 
Query:   34 SVFPFVCMWCSSALWVIYGFFIWDIVPTVA-TNLLGLLFSMYYCAVFAWVVEPASRKRSTYNLFAATFLVVCFVVTFCLGSFSPQARLRSMEDMDAKSTDEIEDDRAQRLLGLAASAATAVQYASPLAEFVKVINRRSTEGMSFALAAVSLLCSSLWLCYGMMLDNAFIYVPNVLGVFFSASQCFLFWLFPR--RGTISGSKIDRG 642
            S+FPFV +  S  LW+ YG  + D  PT+   N +G    + +  +F +V  P   KRS Y       L++  V+ +              ED DA          A+  LG+  +  T V Y SPLA   +V+  RSTE ++F L A +L+  + W  YG+ML + FI VPN+LG      Q  LF ++P   +  +S +K+  G
Sbjct:  194 SMFPFVSLCVSCTLWLRYGLLLGD--PTIVYVNAVGASIGVLFSIIF-YVNTP--HKRSLYRTMVGPALLLYSVLLYVK---------YLAEDEDA----------ARPHLGMVCTLWTVVNYGSPLATLAEVVRSRSTESLAFPLCAANLVVGTEWFIYGLMLQDTFIQVPNLLGALLGLGQLSLFLVYPSSSKAPLSSTKVPPG 375
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BLAST of mRNA_L-elsbetiae_contig11359.1193.1 vs. uniprot
Match: D0NM52_PHYIT (MtN3-like protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NM52_PHYIT)

HSP 1 Score: 86.3 bits (212), Expect = 1.940e-15
Identity = 56/194 (28.87%), Postives = 91/194 (46.91%), Query Frame = 1 
Query:   34 SVFPFVCMWCSSALWVIYGFFIWDIVPTVATNLLGLLFSMYYCAVFAWVVEPASRKRSTYNLFAATFLVVCFVVTFCLGSFSPQARLRSMEDMDAKSTDEIEDDRAQRLLGLAASAATAVQYASPLAEFVKVINRRSTEGMSFALAAVSLLCSSLWLCYGMMLDNAFIYVPNVLGVFFSASQCFLFWLFPRRGT 615
            S  P + M  +   W +YG  I D  P VATN++G++FS++Y  +                + A T ++V  V+   L +                 ++ +E+D    ++G    A +AV + SPL    +VI  R+TE + F +     +  +LWL YG++L+N+F+ VPN   +F    Q  LF  FPR  T
Sbjct:   43 SSLPVLSMVANCVAWGLYGLLIGDYFPLVATNIVGVVFSLFY--LVXXXXXXXXXXXXXLEILATTLVLVGLVLYPFLAA-----------------SEGVEEDTIHNIVGFVTVAISAVMFGSPLVLVKRVIQERNTELLPFTMIVAGAVNCTLWLAYGLLLENSFVIVPNAANLFLGVVQLGLFCCFPRGKT 217
[Close]
BLAST of mRNA_L-elsbetiae_contig11359.1193.1 vs. uniprot
Match: U5EYM8_9DIPT (Sugar transporter SWEET (Fragment) n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5EYM8_9DIPT)

HSP 1 Score: 85.9 bits (211), Expect = 2.170e-15
Identity = 62/209 (29.67%), Postives = 100/209 (47.85%), Query Frame = 1 
Query:   10 RSKHVGERSVFPFVCMWCSSALWVIYGFFIWDIVPTVATNLLG-LLFSMYYCAVFAWVVEPASRKRSTYNLFAATFLVVCFVVTFCLGSFSPQARLRSMEDMDAKSTDEIEDDRAQRLLGLAASAATAVQYASPLAEFVKVINRRSTEGMSFALAAVSLLCSSLWLCYGMMLDNAFIYVPNVLGVFFSASQCFLFWLFPRRGTISGSKI 633
            + K  GE S FPFV  + S++LW+ YG  + D    +  NL+G +LF  Y    + + V      R         FL+V  ++   +        + +  ++D K + E        L+GL       V +ASPL   V VI  +++E + F L   S L    W  YG+++D+AFI +PN+LG   S +Q  LF ++P + T S  ++
Sbjct:   37 QKKSTGESSGFPFVAGFLSTSLWLKYGL-LTDEHTLILVNLIGSILFLSYVTIFYIFTVNKRHIVRQ--------FLIVLIIIFLAI--------IYAKYEIDRKKSVE--------LIGLLCCTVGVVFFASPLIMLVHVIKVKNSESLPFPLIFSSFLVCIQWWIYGILIDDAFIQIPNLLGAVLSGAQLLLFIIYPSKNTYSSGQL 220
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11359.1193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFA7_ECTSI2.660e-8875.26MtN3-like protein n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KGY4_9PHAE7.020e-8073.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1C2F8_PYTOL1.200e-1730.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A813JVL5_POLGL3.650e-1731.58Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A087SZL1_STEMI7.640e-1729.06Sugar transporter SWEET1 (Fragment) n=3 Tax=Stegod... [more]
A0A225VV52_9STRA1.860e-1630.29MtN3-like protein (Fragment) n=1 Tax=Phytophthora ... [more]
S4RLA5_PETMA7.580e-1633.51Sugar transporter SWEET1 n=3 Tax=Petromyzon marinu... [more]
UPI0014035DE31.670e-1532.04uncharacterized protein LOC116950426 isoform X1 n=... [more]
D0NM52_PHYIT1.940e-1528.87MtN3-like protein n=2 Tax=Phytophthora infestans T... [more]
U5EYM8_9DIPT2.170e-1529.67Sugar transporter SWEET (Fragment) n=1 Tax=Corethr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11359contigL-elsbetiae_contig11359:1159..5852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.4
Seed ortholog evalue7.6e-61
Seed eggNOG ortholog2880.D8LFA7
Preferred nameswt-4
KEGG koko:K15382
KEGG TC9.A.58.1
Hectar predicted targeting categorysignal anchor
GOsGO:0002376,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0006810,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008643,GO:0009605,GO:0009607,GO:0009617,GO:0012505,GO:0015144,GO:0016020,GO:0016021,GO:0022857,GO:0031224,GO:0034219,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045087,GO:0050829,GO:0050896,GO:0051119,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0071702,GO:0071944,GO:0098542
EggNOG free text desc.sugar transmembrane transporter activity
EggNOG OGsKOG1623@1,KOG1623@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Ec32 ortholog descriptionMtN3-like protein
Ec32 orthologEc-01_004270.1
Exons5
Model size1534
Cds size612
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.721963-UTR-L-elsbetiae_contig11359:1158..20261622815344.721963-UTR-L-elsbetiae_contig11359:1158..2026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11359 1159..2026 -
1691682851.289475-UTR-L-elsbetiae_contig11359:1158..20261691682851.289475-UTR-L-elsbetiae_contig11359:1158..2026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11359 1159..2026 -
1622815344.7842906-UTR-L-elsbetiae_contig11359:5798..58521622815344.7842906-UTR-L-elsbetiae_contig11359:5798..5852Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11359 5799..5852 -
1691682851.3540251-UTR-L-elsbetiae_contig11359:5798..58521691682851.3540251-UTR-L-elsbetiae_contig11359:5798..5852Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11359 5799..5852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.7339644-CDS-L-elsbetiae_contig11359:2026..21131622815344.7339644-CDS-L-elsbetiae_contig11359:2026..2113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11359 2027..2113 -
1691682851.299387-CDS-L-elsbetiae_contig11359:2026..21131691682851.299387-CDS-L-elsbetiae_contig11359:2026..2113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11359 2027..2113 -
1622815344.7455466-CDS-L-elsbetiae_contig11359:2637..27901622815344.7455466-CDS-L-elsbetiae_contig11359:2637..2790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11359 2638..2790 -
1691682851.3073978-CDS-L-elsbetiae_contig11359:2637..27901691682851.3073978-CDS-L-elsbetiae_contig11359:2637..2790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11359 2638..2790 -
1622815344.7570996-CDS-L-elsbetiae_contig11359:3436..36171622815344.7570996-CDS-L-elsbetiae_contig11359:3436..3617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11359 3437..3617 -
1691682851.316808-CDS-L-elsbetiae_contig11359:3436..36171691682851.316808-CDS-L-elsbetiae_contig11359:3436..3617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11359 3437..3617 -
1622815344.766963-CDS-L-elsbetiae_contig11359:3910..40781622815344.766963-CDS-L-elsbetiae_contig11359:3910..4078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11359 3911..4078 -
1691682851.3293996-CDS-L-elsbetiae_contig11359:3910..40781691682851.3293996-CDS-L-elsbetiae_contig11359:3910..4078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11359 3911..4078 -
1622815344.775576-CDS-L-elsbetiae_contig11359:5775..57981622815344.775576-CDS-L-elsbetiae_contig11359:5775..5798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11359 5776..5798 -
1691682851.3434103-CDS-L-elsbetiae_contig11359:5775..57981691682851.3434103-CDS-L-elsbetiae_contig11359:5775..5798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11359 5776..5798 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11359.1193.1prot_L-elsbetiae_contig11359.1193.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11359 2027..5798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11359.1193.1

>prot_L-elsbetiae_contig11359.1193.1 ID=prot_L-elsbetiae_contig11359.1193.1|Name=mRNA_L-elsbetiae_contig11359.1193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=204bp
MWCSSALWVIYGFFIWDIVPTVATNLLGLLFSMYYCAVFAWVVEPASRKR
STYNLFAATFLVVCFVVTFCLGSFSPQARLRSMEDMDAKSTDEIEDDRAQ
RLLGLAASAATAVQYASPLAEFVKVINRRSTEGMSFALAAVSLLCSSLWL
CYGMMLDNAFIYVPNVLGVFFSASQCFLFWLFPRRGTISGSKIDRGDPHK
GAV*
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mRNA from alignment at L-elsbetiae_contig11359:1159..5852-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11359.1193.1 ID=mRNA_L-elsbetiae_contig11359.1193.1|Name=mRNA_L-elsbetiae_contig11359.1193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4694bp|location=Sequence derived from alignment at L-elsbetiae_contig11359:1159..5852- (Laminarionema elsbetiae ELsaHSoW15)
GAGGTGAGGCGGAGCAAGCATGTGGGAGAGCGATCCGTGTTCCCTTTCGT
CTGCATGTGGTGCAGCTCGGCCCTCTGGTGAGTCAAGTCCGGCCAAGTCG
GCAACGAATCCATGGGCTCGCATTTTACCAGCTGGGTGTTGCTCTGAACA
AGCAGTGTCGTCACGTACGTATTTATGTAGCGGACTTGTGTAGTTTTGGC
CGAAAGTAAGGAGGCGTGTTCGAAGGCTTCACATTCGCCACACCGCTGGT
TGCAAGGGAAGCAAGCATGTTGCCCCAAACACTGTGTAGCTTGGCGCGGA
AAGGGTGTGTCCTGTGTAATCCCTGGACTTTTGGAGACATCTGTAATCAT
GTAGTTTAAATACACACGCGAGGGCTTGTATCCGGAAATAAACGCGTCCT
GGCACCATCACCACCACCACCCTCGTCTCCGTTGTCGTGCACGGAGAACA
CTCTCTTTTGTGGCTGCTGTTTTTTTGTTTTTACTACTCCTTATTTCAAG
CGGCAACACGGGGGGGGGGGGGGGGGGTGGGGGGGTAACTCGGCACCAGA
ACAAAAACAAAAAAGCAGGACAAAAAACAACCTGCTTCAAGGGATGGGAA
AACCCNNNNNNNNNNGCGGCCTGGGCCCCCTCTTTTTTGGTTCTTCCGTT
TTTTTTTTTTTTCCCCCCCCGGTCGCCGCGGGGGGGGGGGGGGGGGGGGG
GGGGGGTCTGAGGCGTAACTCGGCACAAGCACAAGCACAAGAACGCAGGA
CACAAAACTACCTGCTGCAAGGCATGGAGACACTCACTCCTCCTCGCAAG
CGGTTGCACGGTCGGCTAAATAGCTCGGCCGGGGGCCGCCAAAACCCGCC
TACATTATTGCACACCATCATGTGCTATTGATCGGCTGGTCTGGCCGTCT
GACGCGCTGGCTGACTCGCCGAACAGAGCAGAACAGAAAAGGAAAAAAAA
AAAAAAACAGACAACGCCTCACGGCGACTAGATATGTGCATGTAGGAAGT
AGACATCAACCAGGTTAGGCTCGATTGAGCTACAATATTAGCCTCAGGAC
GCCTTTGCGGCGCAATCAACGTCTTCCCGGCCTGCTCGGCTCCGAAAATC
CCTCTCGCTAGGCTCTTAGGTATACCTCTCTCTGGCGGGCGTATCTGGCG
GTGCCCCCCCCCTCGAATGTATGGTATGTATTGTATGTATTGTATGTAGT
CATGTGATATTTCCGCCCTTGAAAGAGGGTGTGGTGGTGCGCCATGATGC
ATCGTACACACTGTCTGACCAGGTGGCTTGTTGCCCTGTAGAGATTTGTT
GCCCTGTTACTGTAATATACATAGGGGGAGGCTACACGGGTAATAATCGC
GTCGGCCAGTTGGTCGGCAGTGTTTTCGGCCTCGACTAGACTGGGCTTTC
TACATACCAGGTACATACGAAGTATACAGGAGCACGTGACCAGTTAGATG
GTCAAGGTCAAGGAATAGCTTTAACTCAGCTTGGCTCCCGGTGTCCAGCA
GCGTCGTTGAACGCCCCGCTCGGCCTCGAGAGGACCTCGAGAGGAACTCC
GAGAGGAAACGCCCGTAAACGGGCGGGTCCGAGCAAACCAATCGTAGCCA
TCATCATCATCATCTATGTAGCCTGTCGATAACGATCAGTGACCCTCGAA
CCACCAGTCTAGACGTGCGCGGAAGATTGAATTCACTCTGTCGCCCCCCC
CTCACGCCTGCCCACTCCACCCCGATCCCTGTTCTCCTGTTCTCTCGGTG
GTCGGTCGCCTGTGTTCAAAATAGGGTGATCTACGGGTTTTTCATCTGGG
ACATAGTGCCGACCGTGGCGACAAACCTCTTGGGTCTCCTGTTCTCGATG
TACTACTGCGCCGTGTTCGCGTGGGTGGTGGAGCCGGCGTCGAGGAAGCG
CAGCACATACAACCTCTTCGCCGCGACTTTTCTCGTAGTCTGGTGGGTGT
TGTACAGCAGCAGTAGAGTCTATATACCCCGTGTACGAGGTGGTGCGTTT
CTAGGGCTACTACTGATGCTGCTGCTACTGCTACTGCTGCTGCTGCGGCT
GCTGCTGCTGCTGCTGCTGCTGCTATTGTTGCTGTCCCGTCCGCCCCGTA
TTTCTCCACAGCCACCCCCCCCAACGAAACTATAAACGCTATTTTCGCCG
CTCTGCCGTCGCAGCTCCTCGGACCCCCCACCCCATTCTCCACCTCTCCC
TTTTTTGTTTTCACACCTTGAAAAAAAAAAAACAGTTTTGTGGTGACGTT
CTGCTTGGGGAGCTTTTCCCCGCAAGCCCGGCTGCGTAGCATGGAAGACA
TGGACGCGAAGAGCACGGACGAGATCGAGGACGACCGCGCGCAGCGGCTC
TTGGGGCTGGCGGCGTCGGCGGCGACGGCTGTGCAGTACGCCTCGCCTCT
GGCGGAGTTCGTCAAGGTGAGGGCGGGGGGTGTGCTAGTGGTGTGTGCCG
TGGTGTGCCGTGGTGCACCTGCCGTATTATCACGGTGAAGTGTGTGCGGT
GTACGTCCATACCGTCTAGTATAGATGTCTGCGCTCGGCGAACGAACGGA
CGACTACACTACGTTGTGCGGTAGTTTACATGCGCCTGCATATTATTGAT
TGCCTCCTTGCTCTTTTTGGGGAGCGAAATACAGCAGTAGCTCGTCGAGG
TGCGCGGCATCGTGTGACGTGCTGTGACGTGTTGTGACGTGTTGTGACGT
GCTGTGACTTGACGTGACGTGCTGCGGTGTGTGATAGGATGTGATGTAAT
TGTGGTGTGATGTGACGTGTGCTGTGATGTTATCGACGTGGCGTGTATAT
TTTTATGGTGCGAGGCCGAAGGGCTTTTCTACAGTAGTTCTGTGCTAGTT
CTGTGCTGTTGAAGCGATGCGCGAACGACGGGAGGTAGGGCTTTGTCCCG
TTTGCCGCGGGACCGGCCGTAAAGAATACTCCTATACAGGACACGATCCC
ATCTATTGTAGTCACGTAGAAGACAATCAAGACTCCAGACCTCGCCGTAG
ATCGTCTGAAATGTGGTAAATCAGCACACGCTTTTTTTCTGCATGGCATG
ATGACGTCTCAGGTGATCAACCGGCGGTCCACCGAGGGGATGTCCTTCGC
CCTCGCGGCGGTGTCGCTGCTCTGCTCGTCGCTGTGGCTGTGCTACGGGA
TGATGCTGGACAACGCCTTCATCTACGTGCCCAACGTCCTGGGGGTTTTC
TTCAGTGCTTCGCAGGTGAACAGCCCAGCGGTTTTGATGTGTGCGGTACA
CGAGAGAAGGTTTCGCGTACAATATGGCGCAAGCATGAAAGAGCTCTCGA
ATGCCGGTGGTGCTTCTTAAAAATTAGTCAGCGGTATGTAGGTACGTTGC
TCTCAAGTCTCCAAAGGGCCAGGACGCGTGGTTAATGATCAGAGGAACAA
CCTACCTCTGATAGCAAGAAAATTGAGTGCCTTGTCCTCCCCCCCCCCCC
TCCTCGCCCATTGGCCGGGGTCTCCGTGCGGTACATATAGGCTTCATGCA
GGCAGCGCCCGCCCCCAGTTCTGAAAAAATGGCACTACTGACTACTGTGG
GGGATTTTTCAAATCTATTTCCTAGATGAATAACCTCCCTCGCTGCCCCC
ACAGCTGTTATTGAGAATCGGGGGCTGGCTTTACTGCAGAGGAAGCCCAT
CTAAACTAATCGTTCGGTGACATCTTTTGTCCGTCTCGGGGGCGTTTTGT
CTTCTTGGTGGTGATTTTTTGTTTTCTTCCCCTCTGCAGTGTTTCTTGTT
CTGGCTTTTCCCGAGAAGGGGCACGATATCCGGCTCCAAAATCGACCGTG
GCGACCCGCACAAGGGTGCCGTGTGAGCTAAACAGCATCAACACCAGCAT
CAGCATCAGCATCAGCATCAGCATCAGCATCAGCATCCATCAACATCGTT
GTTGAGACATCCATTCTCCCAAGACAAGAGCGAGGCATAGAAGAAGAAGA
AGAAGACAACATGTAGCACCAGCACAAGGTTTGGGCTCGCCTAACCAGGG
AATGAGCGACACCAGCACTAACAACCAACCACAAGCACCAAGCCGCCGTC
GCAGCGGAAGTAGGTGGCAACACGCCAGCGGCAGCAGCGGCGCTGTGGTG
GCTCCGGCAAGGGCGATGCCAGCGGCGGGCAGCCTGGGTAGCCGCCGCCG
CCGCCGTGGCGGCGGCGGCGAAGAGCTGCAAGCGGAGTGGGTAGGCGAGG
TTGAGCGAGCTTTCCTAAAGCAAGGAAGGACTACAATACGAAATGTTGTT
TTTGTGTGCCATATGTTTCTTCTTGCTGCTTTTTCGATTTTCGGCAGCTT
TTCGCCGAAAAAGTTACGTCGTGCCAGTTTACGTCGGATGCTGACGCATG
CAGGTGGTGGTGATCCATTTGTGTCACATGTACGTGGGTGCCAGTTTTGA
AGCGAAACCTACGTCCATCTCGTTTTGGTTCTGGTTCTCGAGGTGTCTTG
TGTGGTTGATAAATAGGTTGCAAAACTACGTCCGCGGGCAAATCGCCTCT
GCATGCGACGGTGCAGCAGTGGCATCGCAAGGGCGGCGGGGGAGTCCTTG
AGCTCGGCTTTTTGTTCAGACTAACGATTGTGTGCACTGATTGCTCTCGA
AGTGTATGTCGAAATAGTCTTTTTATGTGTAGCATACCTACATGTTCATT
TTCTGCTCTTTTGTGAGACTAAATGTTCCGGAACGTTCCTCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11359:1159..5852-

>mRNA_L-elsbetiae_contig11359.1193.1 ID=mRNA_L-elsbetiae_contig11359.1193.1|Name=mRNA_L-elsbetiae_contig11359.1193.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig11359:1159..5852- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGTGCAGCTCGGCCCTCTGATGTGGTGCAGCTCGGCCCTCTGGGTG
ATCTACGGGTTTTTCATCTGGGACATAGTGCCGACCGTGGCGACAAACCT
CTTGGGTCTCCTGTTCTCGATGTACTACTGCGCCGTGTTCGCGTGGGTGG
TGGAGCCGGCGTCGAGGAAGCGCAGCACATACAACCTCTTCGCCGCGACT
TTTCTCGTAGTCTGGGTGATCTACGGGTTTTTCATCTGGGACATAGTGCC
GACCGTGGCGACAAACCTCTTGGGTCTCCTGTTCTCGATGTACTACTGCG
CCGTGTTCGCGTGGGTGGTGGAGCCGGCGTCGAGGAAGCGCAGCACATAC
AACCTCTTCGCCGCGACTTTTCTCGTAGTCTGTTTTGTGGTGACGTTCTG
CTTGGGGAGCTTTTCCCCGCAAGCCCGGCTGCGTAGCATGGAAGACATGG
ACGCGAAGAGCACGGACGAGATCGAGGACGACCGCGCGCAGCGGCTCTTG
GGGCTGGCGGCGTCGGCGGCGACGGCTGTGCAGTACGCCTCGCCTCTGGC
GGAGTTCGTCAAGTTTTGTGGTGACGTTCTGCTTGGGGAGCTTTTCCCCG
CAAGCCCGGCTGCGTAGCATGGAAGACATGGACGCGAAGAGCACGGACGA
GATCGAGGACGACCGCGCGCAGCGGCTCTTGGGGCTGGCGGCGTCGGCGG
CGACGGCTGTGCAGTACGCCTCGCCTCTGGCGGAGTTCGTCAAGGTGATC
AACCGGCGGTCCACCGAGGGGATGTCCTTCGCCCTCGCGGCGGTGTCGCT
GCTCTGCTCGTCGCTGTGGCTGTGCTACGGGATGATGCTGGACAACGCCT
TCATCTACGTGCCCAACGTCCTGGGGGTTTTCTTCAGTGCTTCGCAGGTG
ATCAACCGGCGGTCCACCGAGGGGATGTCCTTCGCCCTCGCGGCGGTGTC
GCTGCTCTGCTCGTCGCTGTGGCTGTGCTACGGGATGATGCTGGACAACG
CCTTCATCTACGTGCCCAACGTCCTGGGGGTTTTCTTCAGTGCTTCGCAG
TGTTTCTTGTTCTGGCTTTTCCCGAGAAGGGGCACGATATCCGGCTCCAA
AATCGACCGTGGCGACCCGCACAAGGGTGCCGTGTGATGTTTCTTGTTCT
GGCTTTTCCCGAGAAGGGGCACGATATCCGGCTCCAAAATCGACCGTGGC
GACCCGCACAAGGGTGCCGTGTGA
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