mRNA_L-elsbetiae_contig11356.1191.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11356.1191.1
Unique NamemRNA_L-elsbetiae_contig11356.1191.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11356.1191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11356contigL-elsbetiae_contig11356:1461..2666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size846
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11356.1191.1prot_L-elsbetiae_contig11356.1191.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11356 1461..2168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.6013956-CDS-L-elsbetiae_contig11356:1460..21681622815344.6013956-CDS-L-elsbetiae_contig11356:1460..2168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11356 1461..2168 -
1691682851.2115903-CDS-L-elsbetiae_contig11356:1460..21681691682851.2115903-CDS-L-elsbetiae_contig11356:1460..2168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11356 1461..2168 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.611323-UTR-L-elsbetiae_contig11356:2168..21981622815344.611323-UTR-L-elsbetiae_contig11356:2168..2198Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11356 2169..2198 -
1691682851.2246406-UTR-L-elsbetiae_contig11356:2168..21981691682851.2246406-UTR-L-elsbetiae_contig11356:2168..2198Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11356 2169..2198 -
1622815344.6220324-UTR-L-elsbetiae_contig11356:2560..26661622815344.6220324-UTR-L-elsbetiae_contig11356:2560..2666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11356 2561..2666 -
1691682851.2352238-UTR-L-elsbetiae_contig11356:2560..26661691682851.2352238-UTR-L-elsbetiae_contig11356:2560..2666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11356 2561..2666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11356.1191.1

>prot_L-elsbetiae_contig11356.1191.1 ID=prot_L-elsbetiae_contig11356.1191.1|Name=mRNA_L-elsbetiae_contig11356.1191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
MYAPHFATDPQQQAARESSADASSMMLPASPELQSSWRQESSSPGGWQAA
SPNLTEWQPAPAPASHGLASGNGQGQQALGAGGDDAPTHASTPARQAPDM
MVRPAAGMAPQPPPADPPAASAYSAVMEAAAAAAAAPAAPAAQGAAEVLN
AGGLNNSNSNALPGDPTGGVVGGATTPPPATGKSPTAAASPGGGTTARAA
AKKKPSRPRKRKPKAVTAAAAAAAAAAADGPVRRRR
back to top

mRNA from alignment at L-elsbetiae_contig11356:1461..2666-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11356.1191.1 ID=mRNA_L-elsbetiae_contig11356.1191.1|Name=mRNA_L-elsbetiae_contig11356.1191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig11356:1461..2666- (Laminarionema elsbetiae ELsaHSoW15)
CGAGACACGACCAGAACGACTCGGCGCCTCAGATCGACCCAGCGCGTGGA
CGGCGGAGCCACGACGCTGAGTCCACGGCGGAGAGGAGAGAGAGAAGAGA
GTAGAGGTGAGAGCAGGGTGCGAATTGTATTTGCTGTGTTGTCCCTGGGC
ACTGCTTTTTGGCGGCGCGCATTGACGGGTTTCTCGGGTTGATCGGAGGC
TCTCGCTGACTCTTGGGCGTCGCTTCCATCTTTTTCTGGGTCCGGTTTGC
CGCGCCGTCGAGCTCTGTCGGGCAGGCCGGGAGCACGAGCGCTCGGCTAC
GCGTGCTGCTGCGTTGGTGCGCCGCTCTCTGTTGCCGTACGTGCGCCGCT
CTCTCGCGGATTTTATTGCTGGCCTCTCTCTGTCTGCGAGTCGAGAGCGC
TCTTCGACCTTTCCTCCCCTCTCCACGCTCTACTCTGCTTCTTTTTTGTC
TTCTGCGCGTTGAAGCAGGCAGCGGAGCGAAGTGGGGAAGTTGTGCAGAT
GTACGCCCCTCACTTCGCCACAGACCCGCAGCAGCAGGCCGCACGAGAGT
CTAGCGCGGATGCCTCGTCGATGATGCTCCCGGCTTCCCCCGAGCTGCAG
TCGAGCTGGCGGCAGGAAAGCTCTTCCCCAGGGGGCTGGCAAGCAGCTTC
TCCGAATCTGACGGAGTGGCAGCCAGCGCCGGCGCCCGCATCTCACGGCC
TTGCTTCCGGCAACGGGCAGGGGCAGCAGGCGCTGGGCGCGGGCGGCGAT
GATGCTCCCACCCACGCCTCGACACCCGCGCGGCAGGCTCCCGACATGAT
GGTGAGGCCTGCTGCTGGAATGGCACCTCAACCACCACCGGCTGATCCTC
CTGCGGCGTCAGCCTATTCTGCCGTCATGGAAGCAGCAGCAGCAGCAGCA
GCAGCCCCGGCTGCGCCGGCCGCCCAGGGAGCCGCGGAAGTTCTCAACGC
TGGCGGTTTGAATAATAGTAACAGCAATGCTCTGCCCGGAGACCCAACGG
GGGGAGTGGTGGGAGGAGCTACTACTCCACCGCCTGCTACAGGAAAGTCG
CCGACTGCTGCCGCCTCGCCCGGGGGTGGAACCACCGCGCGCGCCGCGGC
CAAGAAGAAGCCGAGCAGGCCTCGGAAGAGGAAACCCAAGGCCGTAACCG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGATGGTCCCGTGCGGCGG
AGGCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11356:1461..2666-

>mRNA_L-elsbetiae_contig11356.1191.1 ID=mRNA_L-elsbetiae_contig11356.1191.1|Name=mRNA_L-elsbetiae_contig11356.1191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig11356:1461..2666- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGCCCCTCACTTCGCCACAGACCCGCAGCAGCAGGCCGCACGAGA
GTCTAGCGCGGATGCCTCGTCGATGATGCTCCCGGCTTCCCCCGAGCTGC
AGTCGAGCTGGCGGCAGGAAAGCTCTTCCCCAGGGGGCTGGCAAGCAGCT
TCTCCGAATCTGACGGAGTGGCAGCCAGCGCCGGCGCCCGCATCTCACGG
CCTTGCTTCCGGCAACGGGCAGGGGCAGCAGGCGCTGGGCGCGGGCGGCG
ATGATGCTCCCACCCACGCCTCGACACCCGCGCGGCAGGCTCCCGACATG
ATGGTGAGGCCTGCTGCTGGAATGGCACCTCAACCACCACCGGCTGATCC
TCCTGCGGCGTCAGCCTATTCTGCCGTCATGGAAGCAGCAGCAGCAGCAG
CAGCAGCCCCGGCTGCGCCGGCCGCCCAGGGAGCCGCGGAAGTTCTCAAC
GCTGGCGGTTTGAATAATAGTAACAGCAATGCTCTGCCCGGAGACCCAAC
GGGGGGAGTGGTGGGAGGAGCTACTACTCCACCGCCTGCTACAGGAAAGT
CGCCGACTGCTGCCGCCTCGCCCGGGGGTGGAACCACCGCGCGCGCCGCG
GCCAAGAAGAAGCCGAGCAGGCCTCGGAAGAGGAAACCCAAGGCCGTAAC
CGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGATGGTCCCGTGCGGC
GGAGGCGGATGTACGCCCCTCACTTCGCCACAGACCCGCAGCAGCAGGCC
GCACGAGAGTCTAGCGCGGATGCCTCGTCGATGATGCTCCCGGCTTCCCC
CGAGCTGCAGTCGAGCTGGCGGCAGGAAAGCTCTTCCCCAGGGGGCTGGC
AAGCAGCTTCTCCGAATCTGACGGAGTGGCAGCCAGCGCCGGCGCCCGCA
TCTCACGGCCTTGCTTCCGGCAACGGGCAGGGGCAGCAGGCGCTGGGCGC
GGGCGGCGATGATGCTCCCACCCACGCCTCGACACCCGCGCGGCAGGCTC
CCGACATGATGGTGAGGCCTGCTGCTGGAATGGCACCTCAACCACCACCG
GCTGATCCTCCTGCGGCGTCAGCCTATTCTGCCGTCATGGAAGCAGCAGC
AGCAGCAGCAGCAGCCCCGGCTGCGCCGGCCGCCCAGGGAGCCGCGGAAG
TTCTCAACGCTGGCGGTTTGAATAATAGTAACAGCAATGCTCTGCCCGGA
GACCCAACGGGGGGAGTGGTGGGAGGAGCTACTACTCCACCGCCTGCTAC
AGGAAAGTCGCCGACTGCTGCCGCCTCGCCCGGGGGTGGAACCACCGCGC
GCGCCGCGGCCAAGAAGAAGCCGAGCAGGCCTCGGAAGAGGAAACCCAAG
GCCGTAACCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGATGGTCC
CGTGCGGCGGAGGCGG
back to top