mRNA_L-elsbetiae_contig11355.1190.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11355.1190.1
Unique NamemRNA_L-elsbetiae_contig11355.1190.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11355.1190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11355contigL-elsbetiae_contig11355:58..584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.5631902-CDS-L-elsbetiae_contig11355:57..1381622815344.5631902-CDS-L-elsbetiae_contig11355:57..138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11355 58..138 +
1691682851.183969-CDS-L-elsbetiae_contig11355:57..1381691682851.183969-CDS-L-elsbetiae_contig11355:57..138Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11355 58..138 +
1622815344.5725858-CDS-L-elsbetiae_contig11355:500..5841622815344.5725858-CDS-L-elsbetiae_contig11355:500..584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11355 501..584 +
1691682851.192401-CDS-L-elsbetiae_contig11355:500..5841691682851.192401-CDS-L-elsbetiae_contig11355:500..584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11355 501..584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11355.1190.1prot_L-elsbetiae_contig11355.1190.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11355 58..584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11355.1190.1

>prot_L-elsbetiae_contig11355.1190.1 ID=prot_L-elsbetiae_contig11355.1190.1|Name=mRNA_L-elsbetiae_contig11355.1190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
SSKEHQTAKRVTWSYPLGPPPFSPITSVHRSTPACAFPRLSAFAFTRLST
ENLPI
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mRNA from alignment at L-elsbetiae_contig11355:58..584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11355.1190.1 ID=mRNA_L-elsbetiae_contig11355.1190.1|Name=mRNA_L-elsbetiae_contig11355.1190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=527bp|location=Sequence derived from alignment at L-elsbetiae_contig11355:58..584+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTCCAAAGAACACCAGACAGCAAAGCGTGTAACATGGTCATACCCGCT
GGGACCCCCGCCATTTTCGCCCATTACTTCCGTGAGTCGCTACTACTCAA
TTTAACTCTGCTCCAACGTACTCCGTCAAAAATACTTTATCCCATTTGCT
GTCCTATCATATGCAATATTTGCCTTGCTGTTCACATTTATGTCACTCTG
CACGCCGTATTTTTTCCATTAGTTGCCTGCTTATTGTAGTCTAGCTGTTC
GTTGACCACGAACATTTTCCCGCTCCGCATCTCATCTCGACTCTTCATCT
CGCGACTACCCACGTGTCTAGCCAATGCCATCTGTATTTTGCCACCCTCT
ACTTTCTGACTCTCCAGCGTTGTACCAAATCCCATTCACGTCCTCAAAAT
TATTGTTTTTTTGTTGTCTCCTTCGTACATTTCTTTTCCACAGGTCCACA
GGTCCACGCCCGCCTGCGCATTCCCACGTCTATCCGCATTTGCATTTACC
CGACTGTCTACTGAAAACCTACCCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11355:58..584+

>mRNA_L-elsbetiae_contig11355.1190.1 ID=mRNA_L-elsbetiae_contig11355.1190.1|Name=mRNA_L-elsbetiae_contig11355.1190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig11355:58..584+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTCCAAAGAACACCAGACAGCAAAGCGTGTAACATGGTCATACCCGCT
GGGACCCCCGCCATTTTCGCCCATTACTTCCAGCTCCAAAGAACACCAGA
CAGCAAAGCGTGTAACATGGTCATACCCGCTGGGACCCCCGCCATTTTCG
CCCATTACTTCCGTCCACAGGTCCACGCCCGCCTGCGCATTCCCACGTCT
ATCCGCATTTGCATTTACCCGACTGTCTACTGAAAACCTACCCATCGTCC
ACAGGTCCACGCCCGCCTGCGCATTCCCACGTCTATCCGCATTTGCATTT
ACCCGACTGTCTACTGAAAACCTACCCATC
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