mRNA_L-elsbetiae_contig11353.1189.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig11353.1189.1 vs. uniprot
Match: D7G0M6_ECTSI (Nucleoporin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI) HSP 1 Score: 157 bits (397), Expect = 2.290e-42 Identity = 82/103 (79.61%), Postives = 89/103 (86.41%), Query Frame = 1
Query: 19 IRPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRDLEQARCFFRCSELPSQKAGGVFQDAVKHVLAVATTVEVILLAVTF 327
I+PKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFR+LEQ + +P +K GVF V+HVLAVATTVEVILLAVT+
Sbjct: 65 IQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRELEQV--IVTVALVPPKK--GVFNKEVEHVLAVATTVEVILLAVTY 163
BLAST of mRNA_L-elsbetiae_contig11353.1189.1 vs. uniprot
Match: A0A7S1Y049_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y049_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.200e-16 Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 43 LPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQ------DFTQFRDLEQARCFFRCSELPSQKAGGVFQDAVKHVLAVATTVEVILLAVTF 327
+P AL+ + ++CM+FMGLLPE+ AW+++DN LYLW+Y DF F L+Q + +P + GVF+ VK+VLAVAT VEV+LLA+ F
Sbjct: 5 VPPALTEQYRSLKCMSFMGLLPEVRCAWVSIDNRLYLWDYEAARARGEADFLAFDGLDQI--IVSVALVPPRP--GVFRSKVKYVLAVATAVEVVLLALAF 101
BLAST of mRNA_L-elsbetiae_contig11353.1189.1 vs. uniprot
Match: A0A2G5BCU2_COERN (Nucleoporin-domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BCU2_COERN) HSP 1 Score: 82.8 bits (203), Expect = 3.390e-16 Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 1
Query: 43 LPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQ-DFTQFRDLEQARCFFRCSELPSQKAGGVFQDAVKHVLAVATTVEVILLAVTF 327
LP+AL + D +EC FMGL P+I AW+TVD+ L+LWNY + DF F D EQ S + GVF D++KHVL VAT +EV LL V++
Sbjct: 62 LPDALFEQYDLLECRCFMGLFPDIRRAWITVDHRLFLWNYEDESDFYSFEDQEQ----IIVSVAMVKPKPGVFVDSIKHVLVVATPLEVFLLGVSY 153
BLAST of mRNA_L-elsbetiae_contig11353.1189.1 vs. uniprot
Match: A0A1Y1VY37_9FUNG (Nucleoporin-domain-containing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1VY37_9FUNG) HSP 1 Score: 82.0 bits (201), Expect = 6.300e-16 Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 1
Query: 43 LPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQ-DFTQFRDLEQARCFFRCSELPSQKAGGVFQDAVKHVLAVATTVEVILLAVTF 327
LP+AL + D +EC FMGL PEI AW+TVD+ L+LWNY + DF F D EQ S + GVF D++K+VLAVAT +EV LL + +
Sbjct: 63 LPDALFEQYDLLECRCFMGLFPEIQRAWITVDHRLFLWNYEDESDFYSFEDQEQ----IIVSVALVKPKPGVFIDSIKYVLAVATPLEVFLLGIKY 154
BLAST of mRNA_L-elsbetiae_contig11353.1189.1 vs. uniprot
Match: A0A7S3A661_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A661_9RHOD) HSP 1 Score: 81.3 bits (199), Expect = 9.320e-16 Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 1
Query: 43 LPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHT-QDFTQFRDLEQARCFFRCSELPSQKAGGVFQDAVKHVLAVATTVEVILLAVTF 327
LP+AL + +EC +FMG+ PEI AW TVDN L+LWNY T DF F ++Q S + GVF + VK++LAV+TTVEV+LL V F
Sbjct: 47 LPKALFEQYSHLECKSFMGIFPEIHRAWFTVDNRLFLWNYATGSDFYPFEGIDQ----IITSAAIVEPRPGVFVEDVKYLLAVSTTVEVMLLGVCF 138
BLAST of mRNA_L-elsbetiae_contig11353.1189.1 vs. uniprot
Match: A0A7S3ELT5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ELT5_9RHOD) HSP 1 Score: 81.3 bits (199), Expect = 1.110e-15 Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 1
Query: 43 LPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHT-QDFTQFRDLEQARCFFRCSELPSQKAGGVFQDAVKHVLAVATTVEVILLAVTF 327
LP+AL + +EC +FMG+ PEI AW TVDN L+LWNY T DF F ++Q S + GVF + VK++LAV+TTVEV+LL V F
Sbjct: 47 LPKALFEQYSHLECKSFMGIFPEIHRAWFTVDNRLFLWNYATGSDFYPFEGIDQ----IITSAAIVEPRPGVFVEDVKYLLAVSTTVEVMLLGVCF 138
BLAST of mRNA_L-elsbetiae_contig11353.1189.1 vs. uniprot
Match: A0A7S0BDF8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BDF8_9RHOD) HSP 1 Score: 81.3 bits (199), Expect = 1.160e-15 Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 1
Query: 43 LPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHT-QDFTQFRDLEQARCFFRCSELPSQKAGGVFQDAVKHVLAVATTVEVILLAVTF 327
LP+AL + +EC +FMG+ PEI AW TVDN L+LWNY T DF F ++Q S + GVF + VK++LAV+TTVEV+LL V F
Sbjct: 47 LPKALFEQYSHLECKSFMGIFPEIHRAWFTVDNRLFLWNYATGSDFYPFEGIDQ----IITSAAIVEPRPGVFVEDVKYLLAVSTTVEVMLLGVCF 138
BLAST of mRNA_L-elsbetiae_contig11353.1189.1 vs. uniprot
Match: A0A7R9YE90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE90_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.170e-15 Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 43 LPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQ------DFTQFRDLEQARCFFRCSELPSQKAGGVFQDAVKHVLAVATTVEVILLAVTF 327
+P AL+ + ++CM+FMGLLPEI AW+++DN L+LWNY DF +F L+Q + +P + GVF++ VK++LAVAT VE++LLAV F
Sbjct: 31 VPPALTEQYRSLKCMSFMGLLPEISCAWLSIDNKLFLWNYERARYQTDADFLEFDGLDQI--IVSVALVPPRP--GVFREKVKYLLAVATAVEIVLLAVAF 127
BLAST of mRNA_L-elsbetiae_contig11353.1189.1 vs. uniprot
Match: A0A261XXE4_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XXE4_9FUNG) HSP 1 Score: 79.7 bits (195), Expect = 4.070e-15 Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 1
Query: 43 LPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNY-HTQDFTQFRDLEQARCFFRCSELPSQKAGGVFQDAVKHVLAVATTVEVILLAV 321
LP A+ ++ D ++C +FMGLLPEI+ AW+TVDN L+LWNY DF F D +Q +P ++ VF D +++VL +ATT+E+ILL V
Sbjct: 70 LPNAIVQQYDILQCRSFMGLLPEINRAWITVDNKLFLWNYIDGTDFYSFEDQDQI--IVSVGLVPPKR--DVFVDGIEYVLVIATTLEIILLGV 159
BLAST of mRNA_L-elsbetiae_contig11353.1189.1 vs. uniprot
Match: L8HDY8_ACACA (Nucleoporin, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDY8_ACACA) HSP 1 Score: 77.0 bits (188), Expect = 3.620e-14 Identity = 41/95 (43.16%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 43 LPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRDLEQARCFFRCSELPSQKAGGVFQDAVKHVLAVATTVEVILLAVTF 327
LPE L + +EC F+GL PEI+ AW+TVDN L LWNY ++++ + D +Q +P ++ VF + VK+VL +AT VE++LLAV F
Sbjct: 96 LPETLHQMYKSIECKCFLGLFPEINRAWITVDNQLCLWNYESKEYAIWTDQDQI--IVSVGLIPPKR--DVFSEDVKYVLVLATPVEIVLLAVWF 186 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11353.1189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11353.1189.1 >prot_L-elsbetiae_contig11353.1189.1 ID=prot_L-elsbetiae_contig11353.1189.1|Name=mRNA_L-elsbetiae_contig11353.1189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp RSFLKKIRPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYback to top mRNA from alignment at L-elsbetiae_contig11353:157..940+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig11353.1189.1 ID=mRNA_L-elsbetiae_contig11353.1189.1|Name=mRNA_L-elsbetiae_contig11353.1189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=784bp|location=Sequence derived from alignment at L-elsbetiae_contig11353:157..940+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig11353:157..940+ >mRNA_L-elsbetiae_contig11353.1189.1 ID=mRNA_L-elsbetiae_contig11353.1189.1|Name=mRNA_L-elsbetiae_contig11353.1189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig11353:157..940+ (Laminarionema elsbetiae ELsaHSoW15)back to top |